Protein–RNA interactions for Protein: P35244

RPA3, Replication protein A 14 kDa subunit, humanhuman

Predicted RBP Predictions only

Length 121 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
RPA3P35244 CFC1-203ENST00000621673 1444 ntTSL 2 BASIC17.07■□□□□ 0.32
RPA3P35244 FGFR3-208ENST00000481110 4217 ntTSL 1 (best) BASIC17.07■□□□□ 0.32
RPA3P35244 FDX1-201ENST00000260270 3206 ntAPPRIS P1 TSL 1 (best) BASIC17.07■□□□□ 0.32
RPA3P35244 FOXP3-202ENST00000376199 2274 ntTSL 2 BASIC17.07■□□□□ 0.32
RPA3P35244 SALL3-202ENST00000537592 6555 ntAPPRIS P1 TSL 5 BASIC17.07■□□□□ 0.32
RPA3P35244 CKLF-202ENST00000345436 571 ntAPPRIS ALT2 TSL 1 (best) BASIC17.07■□□□□ 0.32
RPA3P35244 RCN1P2-201ENST00000398357 915 ntBASIC17.07■□□□□ 0.32
RPA3P35244 UBE2C-206ENST00000405520 641 ntTSL 2 BASIC17.07■□□□□ 0.32
RPA3P35244 TP53TG1-202ENST00000416560 710 ntTSL 1 (best) BASIC17.07■□□□□ 0.32
RPA3P35244 SBDSP1-202ENST00000423945 618 ntTSL 3 BASIC17.07■□□□□ 0.32
RPA3P35244 KRT16P4-201ENST00000453883 522 ntBASIC17.07■□□□□ 0.32
RPA3P35244 AC125616.1-201ENST00000540369 1015 ntTSL 3 BASIC17.07■□□□□ 0.32
RPA3P35244 FICD-205ENST00000552758 603 ntTSL 2 BASIC17.07■□□□□ 0.32
RPA3P35244 AC111152.3-201ENST00000569699 673 ntBASIC17.07■□□□□ 0.32
RPA3P35244 AC010632.1-201ENST00000590376 572 ntTSL 4 BASIC17.07■□□□□ 0.32
RPA3P35244 AC008735.1-201ENST00000592252 802 ntTSL 5 BASIC17.07■□□□□ 0.32
RPA3P35244 AL121772.3-201ENST00000610840 674 ntBASIC17.07■□□□□ 0.32
RPA3P35244 AL162497.1-201ENST00000615635 518 ntTSL 4 BASIC17.07■□□□□ 0.32
RPA3P35244 UBE2C-208ENST00000617055 705 ntTSL 3 BASIC17.07■□□□□ 0.32
RPA3P35244 GIT2-202ENST00000354574 5387 ntTSL 5 BASIC17.07■□□□□ 0.32
RPA3P35244 LSP1-202ENST00000381775 2016 ntAPPRIS ALT2 TSL 2 BASIC17.07■□□□□ 0.32
RPA3P35244 RUSC1-203ENST00000368349 1968 ntAPPRIS P3 TSL 1 (best) BASIC17.07■□□□□ 0.32
RPA3P35244 TMPRSS13-203ENST00000524993 1950 ntAPPRIS P3 TSL 1 (best) BASIC17.07■□□□□ 0.32
RPA3P35244 GTF2H1-203ENST00000453096 2707 ntAPPRIS P1 TSL 2 BASIC17.07■□□□□ 0.32
RPA3P35244 CALD1-204ENST00000417172 1915 ntTSL 5 BASIC17.07■□□□□ 0.32
RPA3P35244 STT3B-201ENST00000295770 4248 ntAPPRIS P1 TSL 1 (best) BASIC17.07■□□□□ 0.32
RPA3P35244 MPPE1-211ENST00000588072 4236 ntAPPRIS P1 TSL 1 (best) BASIC17.07■□□□□ 0.32
RPA3P35244 GTDC1-219ENST00000542155 2677 ntAPPRIS P1 TSL 2 BASIC17.07■□□□□ 0.32
RPA3P35244 ASAH1-201ENST00000262097 2618 ntAPPRIS P2 TSL 1 (best) BASIC17.07■□□□□ 0.32
RPA3P35244 FAM46A-201ENST00000320172 5609 ntAPPRIS P2 TSL 1 (best) BASIC17.07■□□□□ 0.32
RPA3P35244 TFR2-202ENST00000431692 2631 ntTSL 5 BASIC17.07■□□□□ 0.32
RPA3P35244 GPBAR1-201ENST00000479077 1869 ntAPPRIS P1 TSL 2 BASIC17.07■□□□□ 0.32
RPA3P35244 MGME1-201ENST00000377704 1781 ntTSL 3 BASIC17.07■□□□□ 0.32
RPA3P35244 CLDN6-202ENST00000396925 1739 ntAPPRIS P1 TSL 5 BASIC17.07■□□□□ 0.32
RPA3P35244 CHEK1-202ENST00000427383 1670 ntTSL 1 (best) BASIC17.07■□□□□ 0.32
RPA3P35244 AIFM1-201ENST00000287295 2260 ntAPPRIS P4 TSL 1 (best) BASIC17.07■□□□□ 0.32
RPA3P35244 ZFP28-201ENST00000301318 4096 ntAPPRIS P1 TSL 1 (best) BASIC17.06■□□□□ 0.32
RPA3P35244 ZMIZ1-205ENST00000611351 2196 ntTSL 1 (best) BASIC17.06■□□□□ 0.32
RPA3P35244 USHBP1-203ENST00000431146 2136 ntTSL 2 BASIC17.06■□□□□ 0.32
RPA3P35244 MYOC-201ENST00000037502 2095 ntAPPRIS P1 TSL 1 (best) BASIC17.06■□□□□ 0.32
RPA3P35244 RWDD4-201ENST00000326397 2641 ntAPPRIS P2 TSL 2 BASIC17.06■□□□□ 0.32
RPA3P35244 SBNO2-204ENST00000587024 4861 ntAPPRIS ALT2 TSL 2 BASIC17.06■□□□□ 0.32
RPA3P35244 THAP3-201ENST00000054650 1366 ntAPPRIS ALT2 TSL 1 (best) BASIC17.06■□□□□ 0.32
RPA3P35244 TMEM65-201ENST00000297632 9029 ntAPPRIS P1 TSL 1 (best) BASIC17.06■□□□□ 0.32
RPA3P35244 AMT-206ENST00000458307 1860 ntTSL 2 BASIC17.06■□□□□ 0.32
RPA3P35244 TAF1B-201ENST00000263663 2387 ntAPPRIS P1 TSL 1 (best) BASIC17.06■□□□□ 0.32
RPA3P35244 PRMT2-201ENST00000291705 1011 ntTSL 1 (best) BASIC17.06■□□□□ 0.32
RPA3P35244 DBNDD2-202ENST00000360981 1078 ntAPPRIS P1 TSL 1 (best) BASIC17.06■□□□□ 0.32
RPA3P35244 IPPK-202ENST00000375522 882 ntTSL 3 BASIC17.06■□□□□ 0.32
RPA3P35244 AC103564.2-201ENST00000432853 1299 ntBASIC17.06■□□□□ 0.32
RPA3P35244 AP002490.2-201ENST00000524791 560 ntBASIC17.06■□□□□ 0.32
RPA3P35244 ERCC5-207ENST00000535557 1125 ntTSL 5 BASIC17.06■□□□□ 0.32
RPA3P35244 ANKRD34C-AS1-205ENST00000560452 576 ntTSL 4 BASIC17.06■□□□□ 0.32
RPA3P35244 CTDNEP1-207ENST00000572043 857 ntTSL 3 BASIC17.06■□□□□ 0.32
RPA3P35244 SPINK2-205ENST00000616980 677 ntTSL 5 BASIC17.06■□□□□ 0.32
RPA3P35244 NSUN5P2-201ENST00000388955 1789 ntTSL 1 (best) BASIC17.06■□□□□ 0.32
RPA3P35244 EWSR1-201ENST00000331029 2267 ntTSL 5 BASIC17.06■□□□□ 0.32
RPA3P35244 CNOT3-204ENST00000447684 2765 ntTSL 2 BASIC17.06■□□□□ 0.32
RPA3P35244 RHOT1-203ENST00000358365 3297 ntTSL 1 (best) BASIC17.06■□□□□ 0.32
RPA3P35244 KLHL36-204ENST00000564996 2173 ntAPPRIS P1 TSL 1 (best) BASIC17.06■□□□□ 0.32
RPA3P35244 CELF6-204ENST00000543764 1676 ntTSL 2 BASIC17.06■□□□□ 0.32
RPA3P35244 SH2B1-201ENST00000322610 3095 ntTSL 2 BASIC17.06■□□□□ 0.32
RPA3P35244 AC005052.1-201ENST00000625181 2492 ntBASIC17.06■□□□□ 0.32
RPA3P35244 EGFR-203ENST00000344576 2864 ntTSL 1 (best) BASIC17.06■□□□□ 0.32
RPA3P35244 C12orf66-204ENST00000544871 2441 ntTSL 2 BASIC17.06■□□□□ 0.32
RPA3P35244 EFCAB14-201ENST00000371933 5767 ntAPPRIS P1 TSL 1 (best) BASIC17.06■□□□□ 0.32
RPA3P35244 INO80E-201ENST00000304516 1489 ntTSL 2 BASIC17.05■□□□□ 0.32
RPA3P35244 ST8SIA5-202ENST00000536490 1499 ntTSL 2 BASIC17.05■□□□□ 0.32
RPA3P35244 MGRN1-201ENST00000262370 3968 ntAPPRIS P3 TSL 1 (best) BASIC17.05■□□□□ 0.32
RPA3P35244 FTSJ1-202ENST00000348411 1892 ntAPPRIS P4 TSL 1 (best) BASIC17.05■□□□□ 0.32
RPA3P35244 BTN3A1-204ENST00000425234 1882 ntTSL 2 BASIC17.05■□□□□ 0.32
RPA3P35244 AL136309.2-201ENST00000427049 2277 ntTSL 2 BASIC17.05■□□□□ 0.32
RPA3P35244 FGF11-201ENST00000293829 3063 ntAPPRIS P1 TSL 1 (best) BASIC17.05■□□□□ 0.32
RPA3P35244 ERVK13-1-203ENST00000564340 1449 ntTSL 1 (best) BASIC17.05■□□□□ 0.32
RPA3P35244 GAS7-203ENST00000432992 4970 ntAPPRIS P1 TSL 1 (best) BASIC17.05■□□□□ 0.32
RPA3P35244 TRMT2A-202ENST00000403707 2928 ntAPPRIS P3 TSL 1 (best) BASIC17.05■□□□□ 0.32
RPA3P35244 MOV10L1-201ENST00000262794 3960 ntAPPRIS P3 TSL 1 (best) BASIC17.05■□□□□ 0.32
RPA3P35244 ZNF408-201ENST00000311764 2442 ntAPPRIS P1 TSL 1 (best) BASIC17.05■□□□□ 0.32
RPA3P35244 PBX3-204ENST00000373489 2775 ntAPPRIS P3 TSL 1 (best) BASIC17.05■□□□□ 0.32
RPA3P35244 RAP2C-201ENST00000342983 3896 ntAPPRIS P1 TSL 1 (best) BASIC17.05■□□□□ 0.32
RPA3P35244 RAI2-203ENST00000415486 2037 ntTSL 2 BASIC17.05■□□□□ 0.32
RPA3P35244 LITAF-201ENST00000339430 2356 ntAPPRIS P1 TSL 1 (best) BASIC17.05■□□□□ 0.32
RPA3P35244 ADAM9-206ENST00000481513 2387 ntTSL 2 BASIC17.05■□□□□ 0.32
RPA3P35244 ID2-202ENST00000331129 623 ntAPPRIS P1 TSL 1 (best) BASIC17.05■□□□□ 0.32
RPA3P35244 IFT27-201ENST00000340630 1113 ntAPPRIS P3 TSL 1 (best) BASIC17.05■□□□□ 0.32
RPA3P35244 CD9-202ENST00000382515 1229 ntTSL 5 BASIC17.05■□□□□ 0.32
RPA3P35244 ZNF655-215ENST00000440391 1198 ntTSL 2 BASIC17.05■□□□□ 0.32
RPA3P35244 SLC2A1-204ENST00000460369 541 ntTSL 2 BASIC17.05■□□□□ 0.32
RPA3P35244 EFCAB11-211ENST00000556609 568 ntTSL 3 BASIC17.05■□□□□ 0.32
RPA3P35244 MIR5100-201ENST00000579544 119 ntBASIC17.05■□□□□ 0.32
RPA3P35244 AL591684.3-201ENST00000605187 298 ntBASIC17.05■□□□□ 0.32
RPA3P35244 AXIN2-208ENST00000611991 1019 ntTSL 5 BASIC17.05■□□□□ 0.32
RPA3P35244 CKMT2-202ENST00000424301 1637 ntAPPRIS P1 TSL 1 (best) BASIC17.05■□□□□ 0.32
RPA3P35244 CCDC40-201ENST00000269318 1970 ntTSL 2 BASIC17.05■□□□□ 0.32
RPA3P35244 HTR3E-201ENST00000335304 1912 ntAPPRIS P3 TSL 1 (best) BASIC17.05■□□□□ 0.32
RPA3P35244 GSAP-201ENST00000257626 3251 ntAPPRIS P1 TSL 1 (best) BASIC17.05■□□□□ 0.32
RPA3P35244 CES1-202ENST00000361503 1835 ntAPPRIS ALT1 TSL 1 (best) BASIC17.05■□□□□ 0.32
RPA3P35244 ANKRD26P3-201ENST00000454044 2748 ntBASIC17.05■□□□□ 0.32
RPA3P35244 MPPED1-202ENST00000417669 3657 ntAPPRIS P1 TSL 5 BASIC17.05■□□□□ 0.32
RPA3P35244 ABCB6-201ENST00000265316 3016 ntAPPRIS P1 TSL 1 (best) BASIC17.05■□□□□ 0.32
Retrieved 100 of 98,524 protein–RNA pairs in 25 ms