Protein–RNA interactions for Protein: P09429

HMGB1, High mobility group protein B1, humanhuman

Known RBP Predictions only

Length 215 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
HMGB1P09429 CHAD-201ENST00000258969 1739 ntAPPRIS P1 TSL 1 (best) BASIC19.85■□□□□ 0.77
HMGB1P09429 STK32C-204ENST00000368622 2010 ntTSL 1 (best) BASIC19.85■□□□□ 0.77
HMGB1P09429 ATP5S-201ENST00000245448 1671 ntTSL 1 (best) BASIC19.85■□□□□ 0.77
HMGB1P09429 FBXO4-201ENST00000281623 1682 ntAPPRIS P1 TSL 1 (best) BASIC19.85■□□□□ 0.77
HMGB1P09429 MARCH1-203ENST00000503008 5877 ntAPPRIS P1 TSL 1 (best) BASIC19.85■□□□□ 0.77
HMGB1P09429 LCE1F-201ENST00000334371 357 ntAPPRIS P1 BASIC19.85■□□□□ 0.77
HMGB1P09429 MFSD13A-202ENST00000369931 823 ntTSL 1 (best) BASIC19.85■□□□□ 0.77
HMGB1P09429 SLC2A8-201ENST00000373352 914 ntTSL 2 BASIC19.85■□□□□ 0.77
HMGB1P09429 CLDN14-205ENST00000399139 1231 ntAPPRIS P1 TSL 1 (best) BASIC19.85■□□□□ 0.77
HMGB1P09429 WDR53-204ENST00000433160 887 ntTSL 5 BASIC19.85■□□□□ 0.77
HMGB1P09429 NTMT1-207ENST00000482347 1072 ntTSL 2 BASIC19.85■□□□□ 0.77
HMGB1P09429 PLA2G12A-202ENST00000502283 1189 ntAPPRIS ALT2 TSL 1 (best) BASIC19.85■□□□□ 0.77
HMGB1P09429 AC091182.1-202ENST00000518765 713 ntTSL 2 BASIC19.85■□□□□ 0.77
HMGB1P09429 PENK-208ENST00000523051 772 ntTSL 5 BASIC19.85■□□□□ 0.77
HMGB1P09429 BRICD5-202ENST00000562360 783 ntTSL 2 BASIC19.85■□□□□ 0.77
HMGB1P09429 IZUMO4-213ENST00000620263 947 ntTSL 3 BASIC19.85■□□□□ 0.77
HMGB1P09429 AL139300.1-201ENST00000472726 2505 ntAPPRIS P1 TSL 2 BASIC19.85■□□□□ 0.77
HMGB1P09429 PARP12-201ENST00000263549 3796 ntAPPRIS P1 TSL 1 (best) BASIC19.85■□□□□ 0.77
HMGB1P09429 C16orf89-203ENST00000474471 1829 ntAPPRIS ALT2 TSL 5 BASIC19.85■□□□□ 0.77
HMGB1P09429 FBXO18-203ENST00000397269 3640 ntTSL 5 BASIC19.85■□□□□ 0.77
HMGB1P09429 GABBR1-205ENST00000377034 4527 ntAPPRIS P1 TSL 1 (best) BASIC19.85■□□□□ 0.77
HMGB1P09429 NPR3-203ENST00000415167 1753 ntAPPRIS P3 TSL 1 (best) BASIC19.85■□□□□ 0.77
HMGB1P09429 MIER1-205ENST00000371014 1728 ntTSL 2 BASIC19.85■□□□□ 0.77
HMGB1P09429 CPSF4-201ENST00000292476 1691 ntAPPRIS P3 TSL 1 (best) BASIC19.84■□□□□ 0.77
HMGB1P09429 PRR15-201ENST00000319694 1678 ntAPPRIS P1 TSL 1 (best) BASIC19.84■□□□□ 0.77
HMGB1P09429 IGHM-202ENST00000637539 1683 ntAPPRIS P5 BASIC19.84■□□□□ 0.77
HMGB1P09429 RASSF5-205ENST00000581503 5586 ntTSL 1 (best) BASIC19.84■□□□□ 0.77
HMGB1P09429 BRIX1-201ENST00000336767 1926 ntAPPRIS P1 TSL 1 (best) BASIC19.84■□□□□ 0.77
HMGB1P09429 PDXDC1-204ENST00000455313 2183 ntTSL 2 BASIC19.84■□□□□ 0.77
HMGB1P09429 CDIP1-207ENST00000564828 1636 ntTSL 1 (best) BASIC19.84■□□□□ 0.77
HMGB1P09429 GGT5-203ENST00000398292 2408 ntAPPRIS ALT2 TSL 1 (best) BASIC19.84■□□□□ 0.77
HMGB1P09429 HLA-A-201ENST00000376802 1334 ntBASIC19.84■□□□□ 0.77
HMGB1P09429 KNOP1-205ENST00000568230 1311 ntAPPRIS ALT2 TSL 5 BASIC19.84■□□□□ 0.77
HMGB1P09429 C17orf62-201ENST00000306645 2093 ntAPPRIS P1 TSL 1 (best) BASIC19.84■□□□□ 0.77
HMGB1P09429 ST3GAL5-229ENST00000638986 2331 ntAPPRIS ALT2 TSL 5 BASIC19.84■□□□□ 0.77
HMGB1P09429 AQP12A-201ENST00000337801 1084 ntAPPRIS ALT2 TSL 1 (best) BASIC19.84■□□□□ 0.77
HMGB1P09429 CSF3-203ENST00000394148 622 ntTSL 3 BASIC19.84■□□□□ 0.77
HMGB1P09429 EXOSC3-202ENST00000396521 768 ntTSL 2 BASIC19.84■□□□□ 0.77
HMGB1P09429 AL133410.2-201ENST00000425499 696 ntTSL 5 BASIC19.84■□□□□ 0.77
HMGB1P09429 IGHV3-22-201ENST00000520721 359 ntBASIC19.84■□□□□ 0.77
HMGB1P09429 UNC93B6-202ENST00000528242 690 ntBASIC19.84■□□□□ 0.77
HMGB1P09429 TCAP-202ENST00000578283 583 ntTSL 5 BASIC19.84■□□□□ 0.77
HMGB1P09429 OAZ1-202ENST00000582888 969 ntAPPRIS ALT1 TSL 5 BASIC19.84■□□□□ 0.77
HMGB1P09429 ACTG1-208ENST00000575087 2001 ntAPPRIS P1 TSL 5 BASIC19.84■□□□□ 0.77
HMGB1P09429 VWA1-203ENST00000476993 4511 ntAPPRIS P1 TSL 1 (best) BASIC19.84■□□□□ 0.77
HMGB1P09429 SPOP-201ENST00000347630 2965 ntAPPRIS P1 TSL 5 BASIC19.84■□□□□ 0.77
HMGB1P09429 WNK1-206ENST00000535572 9886 ntAPPRIS ALT2 TSL 1 (best) BASIC19.84■□□□□ 0.77
HMGB1P09429 DHRS1-201ENST00000288111 1480 ntAPPRIS P1 TSL 1 (best) BASIC19.84■□□□□ 0.77
HMGB1P09429 SEMA3B-213ENST00000618865 2925 ntAPPRIS P3 TSL 5 BASIC19.84■□□□□ 0.77
HMGB1P09429 ZC3H12A-201ENST00000373087 2684 ntAPPRIS P1 TSL 1 (best) BASIC19.84■□□□□ 0.77
HMGB1P09429 NBL1-210ENST00000615215 2160 ntAPPRIS ALT2 TSL 1 (best) BASIC19.84■□□□□ 0.77
HMGB1P09429 CACNA1A-214ENST00000614285 8410 ntAPPRIS ALT2 TSL 5 BASIC19.84■□□□□ 0.77
HMGB1P09429 CDK19-202ENST00000368911 6246 ntAPPRIS P1 TSL 1 (best) BASIC19.84■□□□□ 0.77
HMGB1P09429 GLIS1-202ENST00000628545 2807 ntAPPRIS ALT2 TSL 5 BASIC19.84■□□□□ 0.77
HMGB1P09429 FAM181B-201ENST00000329203 3924 ntAPPRIS P1 BASIC19.83■□□□□ 0.77
HMGB1P09429 URAHP-203ENST00000517889 1381 ntTSL 1 (best) BASIC19.83■□□□□ 0.77
HMGB1P09429 FOXP3-206ENST00000557224 1371 ntTSL 2 BASIC19.83■□□□□ 0.77
HMGB1P09429 TMEM39B-201ENST00000336294 1813 ntAPPRIS P1 TSL 1 (best) BASIC19.83■□□□□ 0.77
HMGB1P09429 ITGB4-201ENST00000200181 5919 ntTSL 1 (best) BASIC19.83■□□□□ 0.77
HMGB1P09429 ATG5-210ENST00000636437 2261 ntTSL 5 BASIC19.83■□□□□ 0.77
HMGB1P09429 DNAJB2-201ENST00000336576 3176 ntTSL 1 (best) BASIC19.83■□□□□ 0.77
HMGB1P09429 MTERF2-201ENST00000240050 1790 ntAPPRIS P1 TSL 1 (best) BASIC19.83■□□□□ 0.77
HMGB1P09429 PAX3-207ENST00000409551 1782 ntAPPRIS ALT1 TSL 1 (best) BASIC19.83■□□□□ 0.77
HMGB1P09429 MCF2L-203ENST00000375604 6445 ntAPPRIS P3 TSL 2 BASIC19.83■□□□□ 0.77
HMGB1P09429 FOXP3-201ENST00000376197 1326 ntTSL 2 BASIC19.83■□□□□ 0.77
HMGB1P09429 C2orf81-206ENST00000640868 2407 ntAPPRIS ALT2 BASIC19.83■□□□□ 0.77
HMGB1P09429 EIF2AK4-201ENST00000263791 5499 ntAPPRIS P1 TSL 2 BASIC19.83■□□□□ 0.77
HMGB1P09429 AL512652.2-201ENST00000625156 1716 ntBASIC19.83■□□□□ 0.77
HMGB1P09429 HEG1-201ENST00000311127 9156 ntAPPRIS P1 TSL 5 BASIC19.83■□□□□ 0.77
HMGB1P09429 GUK1-202ENST00000366716 940 ntAPPRIS P3 TSL 1 (best) BASIC19.83■□□□□ 0.77
HMGB1P09429 AC009947.1-201ENST00000444350 727 ntBASIC19.83■□□□□ 0.77
HMGB1P09429 AC009078.2-202ENST00000463353 338 ntBASIC19.83■□□□□ 0.77
HMGB1P09429 RNASET2-206ENST00000476238 887 ntAPPRIS P1 TSL 5 BASIC19.83■□□□□ 0.77
HMGB1P09429 CD63-204ENST00000546939 779 ntTSL 3 BASIC19.83■□□□□ 0.77
HMGB1P09429 CYB561-216ENST00000582297 897 ntTSL 3 BASIC19.83■□□□□ 0.77
HMGB1P09429 HEXIM2-207ENST00000592695 1246 ntAPPRIS P1 TSL 1 (best) BASIC19.83■□□□□ 0.77
HMGB1P09429 WT1-AS_2.1-201ENST00000613208 137 ntBASIC19.83■□□□□ 0.77
HMGB1P09429 KDM6A-213ENST00000611820 5924 ntTSL 1 (best) BASIC19.83■□□□□ 0.76
HMGB1P09429 SLC29A2-202ENST00000357440 2514 ntAPPRIS P1 TSL 1 (best) BASIC19.83■□□□□ 0.76
HMGB1P09429 SLC29A2-205ENST00000544554 2505 ntAPPRIS P1 TSL 2 BASIC19.83■□□□□ 0.76
HMGB1P09429 SLC22A12-201ENST00000336464 1854 ntTSL 1 (best) BASIC19.83■□□□□ 0.76
HMGB1P09429 HSPA1A-201ENST00000375651 2483 ntAPPRIS P1 BASIC19.83■□□□□ 0.76
HMGB1P09429 GCK-202ENST00000345378 2421 ntTSL 2 BASIC19.83■□□□□ 0.76
HMGB1P09429 KCNQ2-236ENST00000637193 2983 ntTSL 5 BASIC19.83■□□□□ 0.76
HMGB1P09429 ABTB1-201ENST00000232744 1965 ntAPPRIS P1 TSL 1 (best) BASIC19.83■□□□□ 0.76
HMGB1P09429 ZYG11A-202ENST00000371532 3942 ntTSL 5 BASIC19.83■□□□□ 0.76
HMGB1P09429 CCDC43-202ENST00000457422 2058 ntTSL 1 (best) BASIC19.82■□□□□ 0.76
HMGB1P09429 ZNF804A-201ENST00000302277 4690 ntAPPRIS P1 TSL 1 (best) BASIC19.82■□□□□ 0.76
HMGB1P09429 LINC02370-201ENST00000428272 2009 ntTSL 5 BASIC19.82■□□□□ 0.76
HMGB1P09429 MTHFD1L-211ENST00000611279 3475 ntAPPRIS ALT1 TSL 5 BASIC19.82■□□□□ 0.76
HMGB1P09429 CD1E-213ENST00000444681 1820 ntAPPRIS ALT2 TSL 1 (best) BASIC19.82■□□□□ 0.76
HMGB1P09429 PIGT-221ENST00000638594 1835 ntTSL 5 BASIC19.82■□□□□ 0.76
HMGB1P09429 GUK1-203ENST00000366718 1275 ntAPPRIS P3 TSL 3 BASIC19.82■□□□□ 0.76
HMGB1P09429 DHRS4-203ENST00000397075 727 ntTSL 2 BASIC19.82■□□□□ 0.76
HMGB1P09429 TSPY3-202ENST00000440483 414 ntTSL 5 BASIC19.82■□□□□ 0.76
HMGB1P09429 FTCD-AS1-201ENST00000446649 500 ntTSL 2 BASIC19.82■□□□□ 0.76
HMGB1P09429 HYAL1-206ENST00000447605 666 ntTSL 1 (best) BASIC19.82■□□□□ 0.76
HMGB1P09429 CXCL1P1-201ENST00000502804 216 ntBASIC19.82■□□□□ 0.76
HMGB1P09429 FIBP-212ENST00000533045 1173 ntTSL 5 BASIC19.82■□□□□ 0.76
HMGB1P09429 ZBP1-208ENST00000541799 1041 ntAPPRIS ALT2 TSL 5 BASIC19.82■□□□□ 0.76
Retrieved 100 of 98,524 protein–RNA pairs in 55.3 ms