Protein–RNA interactions for Protein: O95343

SIX3, Homeobox protein SIX3, humanhuman

Predicted RBP Predictions only

Length 332 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SIX3O95343 TRIM39-201ENST00000376656 3338 ntAPPRIS P4 TSL 2 BASIC16.48■□□□□ 0.23
SIX3O95343 HIBCH-202ENST00000392332 2463 ntTSL 1 (best) BASIC16.48■□□□□ 0.23
SIX3O95343 SLC6A9-202ENST00000360584 2330 ntTSL 1 (best) BASIC16.48■□□□□ 0.23
SIX3O95343 RUSC1-201ENST00000292254 2163 ntAPPRIS P3 TSL 1 (best) BASIC16.48■□□□□ 0.23
SIX3O95343 NTRK2-207ENST00000376214 5608 ntAPPRIS P3 TSL 5 BASIC16.48■□□□□ 0.23
SIX3O95343 NAT9-210ENST00000580301 1860 ntTSL 1 (best) BASIC16.48■□□□□ 0.23
SIX3O95343 RTEL1-TNFRSF6B-202ENST00000482936 4931 ntAPPRIS P5 TSL 2 BASIC16.48■□□□□ 0.23
SIX3O95343 CHN1-205ENST00000409900 2447 ntAPPRIS P1 TSL 1 (best) BASIC16.48■□□□□ 0.23
SIX3O95343 BTBD11-205ENST00000490090 4614 ntTSL 2 BASIC16.48■□□□□ 0.23
SIX3O95343 ELK1-203ENST00000376983 2258 ntAPPRIS P3 TSL 1 (best) BASIC16.48■□□□□ 0.23
SIX3O95343 BANP-204ENST00000393208 2283 ntTSL 2 BASIC16.48■□□□□ 0.23
SIX3O95343 AP3D1-201ENST00000345016 4870 ntAPPRIS P3 TSL 1 (best) BASIC16.48■□□□□ 0.23
SIX3O95343 TUBGCP2-202ENST00000368562 2685 ntTSL 2 BASIC16.48■□□□□ 0.23
SIX3O95343 FOXN1-203ENST00000579795 2145 ntAPPRIS P1 TSL 1 (best) BASIC16.48■□□□□ 0.23
SIX3O95343 PTPRN2-205ENST00000409483 4711 ntAPPRIS ALT2 TSL 2 BASIC16.48■□□□□ 0.23
SIX3O95343 NFIC-210ENST00000590282 1558 ntTSL 2 BASIC16.48■□□□□ 0.23
SIX3O95343 FUK-207ENST00000571514 3054 ntTSL 2 BASIC16.48■□□□□ 0.23
SIX3O95343 LBX1-201ENST00000370193 2900 ntAPPRIS P1 TSL 1 (best) BASIC16.48■□□□□ 0.23
SIX3O95343 CCNA2-201ENST00000274026 2797 ntAPPRIS P1 TSL 1 (best) BASIC16.48■□□□□ 0.23
SIX3O95343 ARHGAP11A-201ENST00000361627 5898 ntAPPRIS P1 TSL 1 (best) BASIC16.48■□□□□ 0.23
SIX3O95343 PCDHGA12-202ENST00000613314 2634 ntAPPRIS ALT2 BASIC16.48■□□□□ 0.23
SIX3O95343 ATP5J-201ENST00000284971 614 ntAPPRIS P1 TSL 1 (best) BASIC16.48■□□□□ 0.23
SIX3O95343 CENPX-201ENST00000306704 751 ntTSL 1 (best) BASIC16.48■□□□□ 0.23
SIX3O95343 DBI-201ENST00000311521 714 ntTSL 1 (best) BASIC16.48■□□□□ 0.23
SIX3O95343 DFFB-203ENST00000341385 572 ntTSL 5 BASIC16.48■□□□□ 0.23
SIX3O95343 CKLF-202ENST00000345436 571 ntAPPRIS ALT2 TSL 1 (best) BASIC16.48■□□□□ 0.23
SIX3O95343 COLEC11-202ENST00000349077 1259 ntAPPRIS P1 TSL 1 (best) BASIC16.48■□□□□ 0.23
SIX3O95343 ITM2B-201ENST00000378549 805 ntTSL 5 BASIC16.48■□□□□ 0.23
SIX3O95343 IGF2-202ENST00000381392 1005 ntAPPRIS ALT1 TSL 1 (best) BASIC16.48■□□□□ 0.23
SIX3O95343 AC004975.2-201ENST00000442017 565 ntTSL 5 BASIC16.48■□□□□ 0.23
SIX3O95343 TM4SF19-TCTEX1D2-201ENST00000442633 964 ntAPPRIS P1 TSL 1 (best) BASIC16.48■□□□□ 0.23
SIX3O95343 DHRS12-203ENST00000444610 1162 ntAPPRIS P1 TSL 1 (best) BASIC16.48■□□□□ 0.23
SIX3O95343 AC004080.2-201ENST00000523331 556 ntTSL 4 BASIC16.48■□□□□ 0.23
SIX3O95343 H2AFJ-203ENST00000544848 644 ntAPPRIS P1 BASIC16.48■□□□□ 0.23
SIX3O95343 AC092725.1-201ENST00000565783 499 ntTSL 4 BASIC16.48■□□□□ 0.23
SIX3O95343 MRPL21-208ENST00000567045 932 ntTSL 2 BASIC16.48■□□□□ 0.23
SIX3O95343 RNF151-202ENST00000569210 853 ntTSL 2 BASIC16.48■□□□□ 0.23
SIX3O95343 SDCCAG3P1-201ENST00000589292 1150 ntBASIC16.48■□□□□ 0.23
SIX3O95343 NBPF14-202ENST00000593495 1082 ntAPPRIS P1 TSL 1 (best) BASIC16.48■□□□□ 0.23
SIX3O95343 MTDHP4-201ENST00000600287 670 ntBASIC16.48■□□□□ 0.23
SIX3O95343 GPX4-210ENST00000611653 793 ntTSL 1 (best) BASIC16.48■□□□□ 0.23
SIX3O95343 CHST13-202ENST00000615522 1146 ntTSL 5 BASIC16.48■□□□□ 0.23
SIX3O95343 FBXO4-201ENST00000281623 1682 ntAPPRIS P1 TSL 1 (best) BASIC16.48■□□□□ 0.23
SIX3O95343 RAD1-208ENST00000628399 1678 ntTSL 3 BASIC16.48■□□□□ 0.23
SIX3O95343 AC006019.1-201ENST00000425591 2470 ntTSL 2 BASIC16.48■□□□□ 0.23
SIX3O95343 CTPS2-201ENST00000359276 3629 ntAPPRIS P1 TSL 1 (best) BASIC16.48■□□□□ 0.23
SIX3O95343 MFF-202ENST00000337110 1760 ntTSL 1 (best) BASIC16.48■□□□□ 0.23
SIX3O95343 STK32C-204ENST00000368622 2010 ntTSL 1 (best) BASIC16.48■□□□□ 0.23
SIX3O95343 TSKU-205ENST00000612930 2666 ntAPPRIS P1 TSL 4 BASIC16.48■□□□□ 0.23
SIX3O95343 SLC25A45-202ENST00000398802 2286 ntAPPRIS P1 TSL 5 BASIC16.48■□□□□ 0.23
SIX3O95343 BTN1A1-202ENST00000613186 2266 ntTSL 2 BASIC16.48■□□□□ 0.23
SIX3O95343 ZFP28-201ENST00000301318 4096 ntAPPRIS P1 TSL 1 (best) BASIC16.48■□□□□ 0.23
SIX3O95343 SEPT8-208ENST00000378721 1723 ntTSL 5 BASIC16.48■□□□□ 0.23
SIX3O95343 SIL1-213ENST00000509534 1714 ntTSL 5 BASIC16.48■□□□□ 0.23
SIX3O95343 UCKL1-203ENST00000369908 1954 ntAPPRIS P1 TSL 2 BASIC16.47■□□□□ 0.23
SIX3O95343 CTSD-213ENST00000637915 1982 ntAPPRIS ALT2 TSL 5 BASIC16.47■□□□□ 0.23
SIX3O95343 HSD3B7-201ENST00000262520 2200 ntTSL 2 BASIC16.47■□□□□ 0.23
SIX3O95343 GJA8-201ENST00000369235 1302 ntAPPRIS P1 BASIC16.47■□□□□ 0.23
SIX3O95343 PTHLH-203ENST00000395872 1318 ntAPPRIS ALT1 TSL 5 BASIC16.47■□□□□ 0.23
SIX3O95343 AHSA2-202ENST00000394457 6574 ntTSL 1 (best) BASIC16.47■□□□□ 0.23
SIX3O95343 MGEA5-202ENST00000361464 5155 ntAPPRIS P1 TSL 1 (best) BASIC16.47■□□□□ 0.23
SIX3O95343 PSME3-202ENST00000441946 2944 ntTSL 2 BASIC16.47■□□□□ 0.23
SIX3O95343 AP001781.3-201ENST00000622211 2939 ntAPPRIS P1 TSL 2 BASIC16.47■□□□□ 0.23
SIX3O95343 CEP72-201ENST00000264935 2434 ntAPPRIS P1 TSL 1 (best) BASIC16.47■□□□□ 0.23
SIX3O95343 AC092143.3-201ENST00000565150 1900 ntTSL 5 BASIC16.47■□□□□ 0.23
SIX3O95343 TSPAN4-205ENST00000397406 1426 ntAPPRIS P1 TSL 1 (best) BASIC16.47■□□□□ 0.23
SIX3O95343 VSTM2A-204ENST00000407838 3112 ntAPPRIS P1 TSL 3 BASIC16.47■□□□□ 0.23
SIX3O95343 SORT1-201ENST00000256637 7028 ntAPPRIS P1 TSL 1 (best) BASIC16.47■□□□□ 0.23
SIX3O95343 TPT1-AS1-215ENST00000522673 1519 ntTSL 5 BASIC16.47■□□□□ 0.23
SIX3O95343 TP73-208ENST00000378295 5188 ntAPPRIS P1 TSL 1 (best) BASIC16.47■□□□□ 0.23
SIX3O95343 GJC3-201ENST00000312891 1116 ntAPPRIS P1 TSL 1 (best) BASIC16.47■□□□□ 0.23
SIX3O95343 TPM1-203ENST00000317516 738 ntTSL 1 (best) BASIC16.47■□□□□ 0.23
SIX3O95343 BAG1-202ENST00000379704 1128 ntAPPRIS ALT2 TSL 1 (best) BASIC16.47■□□□□ 0.23
SIX3O95343 NFKBIB-202ENST00000392079 991 ntTSL 5 BASIC16.47■□□□□ 0.23
SIX3O95343 VPS13A-AS1-201ENST00000415172 519 ntTSL 2 BASIC16.47■□□□□ 0.23
SIX3O95343 AC093459.1-201ENST00000444567 481 ntTSL 3 BASIC16.47■□□□□ 0.23
SIX3O95343 PAWRP1-201ENST00000451083 565 ntBASIC16.47■□□□□ 0.23
SIX3O95343 HLA-J-202ENST00000469281 1241 ntBASIC16.47■□□□□ 0.23
SIX3O95343 UCHL1-204ENST00000503431 917 ntAPPRIS P1 TSL 3 BASIC16.47■□□□□ 0.23
SIX3O95343 NDUFB9-204ENST00000518008 789 ntTSL 2 BASIC16.47■□□□□ 0.23
SIX3O95343 AC125616.1-201ENST00000540369 1015 ntTSL 3 BASIC16.47■□□□□ 0.23
SIX3O95343 TMEM106C-214ENST00000550161 976 ntTSL 3 BASIC16.47■□□□□ 0.23
SIX3O95343 TPM1-218ENST00000559281 851 ntTSL 5 BASIC16.47■□□□□ 0.23
SIX3O95343 AC091304.2-201ENST00000564639 760 ntBASIC16.47■□□□□ 0.23
SIX3O95343 BLOC1S6-214ENST00000567461 1052 ntTSL 2 BASIC16.47■□□□□ 0.23
SIX3O95343 LINC00910-203ENST00000587874 544 ntTSL 4 BASIC16.47■□□□□ 0.23
SIX3O95343 NXNL2-205ENST00000618633 739 ntTSL 5 BASIC16.47■□□□□ 0.23
SIX3O95343 SETD3-209ENST00000630307 1281 ntTSL 5 BASIC16.47■□□□□ 0.23
SIX3O95343 ZSCAN10-201ENST00000252463 2463 ntTSL 1 (best) BASIC16.47■□□□□ 0.23
SIX3O95343 SPATA18-202ENST00000419395 2816 ntTSL 2 BASIC16.47■□□□□ 0.23
SIX3O95343 RELT-201ENST00000064780 3535 ntAPPRIS P1 TSL 1 (best) BASIC16.47■□□□□ 0.23
SIX3O95343 ARID1B-202ENST00000346085 10194 ntAPPRIS ALT2 TSL 1 (best) BASIC16.47■□□□□ 0.23
SIX3O95343 GABARAPL1-205ENST00000539170 1700 ntTSL 3 BASIC16.47■□□□□ 0.23
SIX3O95343 ADAM15-228ENST00000531455 2678 ntAPPRIS ALT2 TSL 2 BASIC16.47■□□□□ 0.23
SIX3O95343 THNSL2-202ENST00000343544 2052 ntTSL 1 (best) BASIC16.47■□□□□ 0.23
SIX3O95343 KLC4-202ENST00000347162 2404 ntAPPRIS ALT2 TSL 1 (best) BASIC16.47■□□□□ 0.23
SIX3O95343 ZDHHC13-202ENST00000446113 2445 ntAPPRIS P1 TSL 1 (best) BASIC16.47■□□□□ 0.23
SIX3O95343 RCOR3-204ENST00000452621 1827 ntTSL 2 BASIC16.47■□□□□ 0.23
SIX3O95343 TPD52L2-209ENST00000611972 2197 ntTSL 3 BASIC16.47■□□□□ 0.23
SIX3O95343 GCFC2-202ENST00000409857 2516 ntTSL 5 BASIC16.47■□□□□ 0.23
Retrieved 100 of 98,524 protein–RNA pairs in 41 ms