Protein–RNA interactions for Protein: H7C350

CCDC188, Coiled-coil domain-containing protein 188, humanhuman

Predictions only

Length 402 aa.

Download Table  
Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC188H7C350 SHISA5-209ENST00000443308 1933 ntTSL 2 BASIC17.55■□□□□ 0.4
CCDC188H7C350 ARHGEF28-211ENST00000512883 2936 ntTSL 2 BASIC17.54■□□□□ 0.4
CCDC188H7C350 LINC00599-203ENST00000519461 2922 ntTSL 1 (best) BASIC17.54■□□□□ 0.4
CCDC188H7C350 KCNC2-209ENST00000550433 2931 ntAPPRIS ALT2 TSL 1 (best) BASIC17.54■□□□□ 0.4
CCDC188H7C350 TYSND1-201ENST00000287078 3644 ntAPPRIS P1 TSL 1 (best) BASIC17.54■□□□□ 0.4
CCDC188H7C350 SLFNL1-203ENST00000372611 1865 ntAPPRIS ALT2 TSL 2 BASIC17.54■□□□□ 0.4
CCDC188H7C350 EIF2B4-206ENST00000451130 1633 ntTSL 1 (best) BASIC17.54■□□□□ 0.4
CCDC188H7C350 GLIPR2-205ENST00000619700 1645 ntTSL 3 BASIC17.54■□□□□ 0.4
CCDC188H7C350 FAM53A-201ENST00000308132 2802 ntAPPRIS P1 TSL 2 BASIC17.54■□□□□ 0.4
CCDC188H7C350 ASB10-201ENST00000275838 1820 ntTSL 1 (best) BASIC17.54■□□□□ 0.4
CCDC188H7C350 PTPRN2-201ENST00000389413 4723 ntTSL 1 (best) BASIC17.54■□□□□ 0.4
CCDC188H7C350 CAPRIN1-207ENST00000529307 2266 ntAPPRIS ALT2 TSL 2 BASIC17.54■□□□□ 0.4
CCDC188H7C350 PDCD5-203ENST00000419343 1799 ntTSL 2 BASIC17.54■□□□□ 0.4
CCDC188H7C350 SKP2-201ENST00000274254 1537 ntTSL 1 (best) BASIC17.54■□□□□ 0.4
CCDC188H7C350 DYM-201ENST00000269445 5049 ntAPPRIS P1 TSL 1 (best) BASIC17.54■□□□□ 0.4
CCDC188H7C350 PTCRA-201ENST00000304672 1080 ntAPPRIS P3 TSL 1 (best) BASIC17.54■□□□□ 0.4
CCDC188H7C350 MPIG6B-202ENST00000375805 668 ntAPPRIS ALT2 TSL 1 (best) BASIC17.54■□□□□ 0.4
CCDC188H7C350 PTCRA-202ENST00000441198 1005 ntTSL 1 (best) BASIC17.54■□□□□ 0.4
CCDC188H7C350 PTCRA-203ENST00000446507 759 ntTSL 1 (best) BASIC17.54■□□□□ 0.4
CCDC188H7C350 AP000344.1-201ENST00000454268 641 ntTSL 5 BASIC17.54■□□□□ 0.4
CCDC188H7C350 AP000344.1-202ENST00000457193 586 ntTSL 4 BASIC17.54■□□□□ 0.4
CCDC188H7C350 AC091607.1-201ENST00000490318 1060 ntBASIC17.54■□□□□ 0.4
CCDC188H7C350 AC139749.1-201ENST00000534584 1094 ntTSL 3 BASIC17.54■□□□□ 0.4
CCDC188H7C350 ABR-204ENST00000543210 1049 ntTSL 2 BASIC17.54■□□□□ 0.4
CCDC188H7C350 ANKRD34C-AS1-205ENST00000560452 576 ntTSL 4 BASIC17.54■□□□□ 0.4
CCDC188H7C350 ABR-217ENST00000572441 563 ntTSL 4 BASIC17.54■□□□□ 0.4
CCDC188H7C350 CENPX-206ENST00000580435 710 ntTSL 1 (best) BASIC17.54■□□□□ 0.4
CCDC188H7C350 Metazoa_SRP.104-201ENST00000622099 280 ntBASIC17.54■□□□□ 0.4
CCDC188H7C350 HIST1H2BN-204ENST00000612898 1723 ntAPPRIS P1 BASIC17.54■□□□□ 0.4
CCDC188H7C350 KLK3-201ENST00000326003 1463 ntAPPRIS P1 TSL 1 (best) BASIC17.54■□□□□ 0.4
CCDC188H7C350 PSMD6-210ENST00000492933 1495 ntTSL 1 (best) BASIC17.54■□□□□ 0.4
CCDC188H7C350 PEG3-206ENST00000598410 5304 ntTSL 1 (best) BASIC17.54■□□□□ 0.4
CCDC188H7C350 INTS4P1-201ENST00000438455 1935 ntBASIC17.54■□□□□ 0.4
CCDC188H7C350 AC104640.1-201ENST00000562617 2109 ntBASIC17.54■□□□□ 0.4
CCDC188H7C350 LDB3-208ENST00000623007 1664 ntTSL 1 (best) BASIC17.54■□□□□ 0.4
CCDC188H7C350 FAM104A-201ENST00000403627 2798 ntAPPRIS P1 TSL 1 (best) BASIC17.54■□□□□ 0.4
CCDC188H7C350 DAP-201ENST00000230895 2339 ntAPPRIS P1 TSL 1 (best) BASIC17.54■□□□□ 0.4
CCDC188H7C350 CLEC18B-201ENST00000339953 1865 ntAPPRIS P2 TSL 1 (best) BASIC17.54■□□□□ 0.4
CCDC188H7C350 F3-202ENST00000370207 1879 ntTSL 1 (best) BASIC17.54■□□□□ 0.4
CCDC188H7C350 CLEC18C-202ENST00000536907 1865 ntAPPRIS ALT2 TSL 5 BASIC17.54■□□□□ 0.4
CCDC188H7C350 PPP1R26-205ENST00000605286 4744 ntAPPRIS P1 TSL 3 BASIC17.54■□□□□ 0.4
CCDC188H7C350 NR4A1-204ENST00000394825 2528 ntAPPRIS P1 TSL 1 (best) BASIC17.54■□□□□ 0.4
CCDC188H7C350 SEMA5B-211ENST00000616742 4933 ntAPPRIS P3 TSL 5 BASIC17.54■□□□□ 0.4
CCDC188H7C350 MAPK8IP2-202ENST00000329492 3381 ntAPPRIS P1 TSL 1 (best) BASIC17.54■□□□□ 0.4
CCDC188H7C350 ASB1-201ENST00000264607 6994 ntAPPRIS P1 TSL 1 (best) BASIC17.54■□□□□ 0.4
CCDC188H7C350 AQP8-201ENST00000219660 1359 ntAPPRIS P1 TSL 1 (best) BASIC17.53■□□□□ 0.4
CCDC188H7C350 TNFRSF13B-201ENST00000261652 1357 ntAPPRIS P2 TSL 1 (best) BASIC17.53■□□□□ 0.4
CCDC188H7C350 ADGRA1-202ENST00000392607 4283 ntAPPRIS P2 TSL 5 BASIC17.53■□□□□ 0.4
CCDC188H7C350 AC097637.2-201ENST00000624096 1997 ntBASIC17.53■□□□□ 0.4
CCDC188H7C350 GGT4P-201ENST00000623672 1708 ntBASIC17.53■□□□□ 0.4
CCDC188H7C350 SALL4-203ENST00000395997 1918 ntTSL 1 (best) BASIC17.53■□□□□ 0.4
CCDC188H7C350 XXYLT1-205ENST00000437101 2149 ntTSL 2 BASIC17.53■□□□□ 0.4
CCDC188H7C350 VASP-201ENST00000245932 2305 ntAPPRIS P1 TSL 1 (best) BASIC17.53■□□□□ 0.4
CCDC188H7C350 CDKN2AIP-203ENST00000504169 2721 ntAPPRIS P1 TSL 1 (best) BASIC17.53■□□□□ 0.4
CCDC188H7C350 SLC30A1-201ENST00000367001 5474 ntAPPRIS P1 TSL 1 (best) BASIC17.53■□□□□ 0.4
CCDC188H7C350 SP100-204ENST00000409341 1898 ntTSL 1 (best) BASIC17.53■□□□□ 0.4
CCDC188H7C350 TMEM37-201ENST00000306406 1688 ntAPPRIS P1 TSL 1 (best) BASIC17.53■□□□□ 0.4
CCDC188H7C350 ACP5-212ENST00000592828 1699 ntAPPRIS P1 TSL 5 BASIC17.53■□□□□ 0.4
CCDC188H7C350 SNRPA1-201ENST00000254193 1055 ntAPPRIS P1 TSL 1 (best) BASIC17.53■□□□□ 0.4
CCDC188H7C350 METTL5-201ENST00000260953 1010 ntAPPRIS P2 TSL 1 (best) BASIC17.53■□□□□ 0.4
CCDC188H7C350 ZFAND2A-201ENST00000316495 860 ntAPPRIS P1 TSL 1 (best) BASIC17.53■□□□□ 0.4
CCDC188H7C350 ZHX1-C8orf76-201ENST00000357082 1257 ntAPPRIS P2 TSL 2 BASIC17.53■□□□□ 0.4
CCDC188H7C350 ZFAND2A-203ENST00000401903 968 ntTSL 3 BASIC17.53■□□□□ 0.4
CCDC188H7C350 MUC1-211ENST00000438413 927 ntTSL 1 (best) BASIC17.53■□□□□ 0.4
CCDC188H7C350 AC134772.1-201ENST00000438872 885 ntTSL 3 BASIC17.53■□□□□ 0.4
CCDC188H7C350 AP001059.1-201ENST00000442785 523 ntTSL 3 BASIC17.53■□□□□ 0.4
CCDC188H7C350 SRP19-202ENST00000445150 833 ntTSL 2 BASIC17.53■□□□□ 0.4
CCDC188H7C350 AC063952.2-201ENST00000498792 1227 ntBASIC17.53■□□□□ 0.4
CCDC188H7C350 TMEM218-206ENST00000527766 812 ntAPPRIS P1 TSL 3 BASIC17.53■□□□□ 0.4
CCDC188H7C350 NUTF2-205ENST00000568396 1179 ntAPPRIS P1 TSL 3 BASIC17.53■□□□□ 0.4
CCDC188H7C350 AC008105.3-202ENST00000585471 1077 ntTSL 1 (best) BASIC17.53■□□□□ 0.4
CCDC188H7C350 C18orf21-207ENST00000610527 1059 ntTSL 2 BASIC17.53■□□□□ 0.4
CCDC188H7C350 C18orf21-208ENST00000618334 856 ntTSL 3 BASIC17.53■□□□□ 0.4
CCDC188H7C350 ABBA01031661.1-201ENST00000634362 1253 ntBASIC17.53■□□□□ 0.4
CCDC188H7C350 CDC14A-202ENST00000361544 2417 ntAPPRIS P4 TSL 1 (best) BASIC17.53■□□□□ 0.4
CCDC188H7C350 ROCK2-209ENST00000616279 6401 ntTSL 1 (best) BASIC17.53■□□□□ 0.4
CCDC188H7C350 MGAT1-201ENST00000307826 2761 ntAPPRIS P1 TSL 1 (best) BASIC17.53■□□□□ 0.4
CCDC188H7C350 HLA-F-216ENST00000259951 1635 ntAPPRIS P4 BASIC17.53■□□□□ 0.4
CCDC188H7C350 ITGA7-202ENST00000347027 4084 ntAPPRIS ALT2 TSL 5 BASIC17.53■□□□□ 0.4
CCDC188H7C350 HOXB3-205ENST00000470495 4208 ntAPPRIS P1 TSL 1 (best) BASIC17.53■□□□□ 0.4
CCDC188H7C350 RPAP3-203ENST00000432584 2133 ntTSL 2 BASIC17.53■□□□□ 0.4
CCDC188H7C350 PEA15-202ENST00000368076 2694 ntTSL 2 BASIC17.53■□□□□ 0.4
CCDC188H7C350 ZNF382-202ENST00000423582 2657 ntTSL 1 (best) BASIC17.53■□□□□ 0.4
CCDC188H7C350 RIMS1-210ENST00000491071 5047 ntTSL 5 BASIC17.53■□□□□ 0.4
CCDC188H7C350 LINC00887-203ENST00000429578 1717 ntTSL 2 BASIC17.52■□□□□ 0.4
CCDC188H7C350 SEPT11-203ENST00000502584 2615 ntAPPRIS ALT1 TSL 5 BASIC17.52■□□□□ 0.4
CCDC188H7C350 NKPD1-201ENST00000317951 4233 ntAPPRIS P1 TSL 2 BASIC17.52■□□□□ 0.4
CCDC188H7C350 RRM2B-201ENST00000251810 4931 ntAPPRIS P1 TSL 1 (best) BASIC17.52■□□□□ 0.4
CCDC188H7C350 GSAP-201ENST00000257626 3251 ntAPPRIS P1 TSL 1 (best) BASIC17.52■□□□□ 0.4
CCDC188H7C350 TMEM57-202ENST00000399766 3294 ntTSL 1 (best) BASIC17.52■□□□□ 0.4
CCDC188H7C350 COL4A1-204ENST00000543140 2547 ntTSL 1 (best) BASIC17.52■□□□□ 0.4
CCDC188H7C350 MEIS3-206ENST00000559524 1828 ntAPPRIS P3 TSL 2 BASIC17.52■□□□□ 0.4
CCDC188H7C350 FAM57B-201ENST00000279389 1481 ntTSL 1 (best) BASIC17.52■□□□□ 0.4
CCDC188H7C350 ZFAND6-207ENST00000558494 1472 ntAPPRIS P1 TSL 1 (best) BASIC17.52■□□□□ 0.4
CCDC188H7C350 RAB31-207ENST00000578921 4055 ntAPPRIS P1 TSL 1 (best) BASIC17.52■□□□□ 0.4
CCDC188H7C350 SAMD4A-204ENST00000554335 3003 ntAPPRIS P1 TSL 5 BASIC17.52■□□□□ 0.4
CCDC188H7C350 MCF2L2-208ENST00000473233 4748 ntAPPRIS ALT2 TSL 5 BASIC17.52■□□□□ 0.4
CCDC188H7C350 LCE3D-201ENST00000368787 613 ntAPPRIS P1 TSL 1 (best) BASIC17.52■□□□□ 0.4
CCDC188H7C350 SPDYE21P-201ENST00000413323 827 ntBASIC17.52■□□□□ 0.4
CCDC188H7C350 BECN2-201ENST00000419583 1296 ntAPPRIS P1 BASIC17.52■□□□□ 0.4
Retrieved 100 of 98,524 protein–RNA pairs in 23.5 ms