Protein–RNA interactions for Protein: Q9Y5H4

PCDHGA1, Protocadherin gamma-A1, humanhuman

Predictions only

Length 931 aa.

Download Table  
Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
PCDHGA1Q9Y5H4 AURKB-214ENST00000585124 1227 ntAPPRIS P3 TSL 1 (best) BASIC16.14■□□□□ 0.17
PCDHGA1Q9Y5H4 AC073389.1-201ENST00000595595 795 ntBASIC16.14■□□□□ 0.17
PCDHGA1Q9Y5H4 AC021097.1-201ENST00000607902 574 ntBASIC16.14■□□□□ 0.17
PCDHGA1Q9Y5H4 SRP9-204ENST00000619790 377 ntTSL 2 BASIC16.14■□□□□ 0.17
PCDHGA1Q9Y5H4 ZNF655-225ENST00000626122 705 ntTSL 5 BASIC16.14■□□□□ 0.17
PCDHGA1Q9Y5H4 AC254562.3-201ENST00000626627 631 ntTSL 5 BASIC16.14■□□□□ 0.17
PCDHGA1Q9Y5H4 TRAF3-203ENST00000392745 2459 ntAPPRIS P1 TSL 1 (best) BASIC16.14■□□□□ 0.17
PCDHGA1Q9Y5H4 FOXI3-201ENST00000428390 2804 ntAPPRIS P1 TSL 3 BASIC16.14■□□□□ 0.17
PCDHGA1Q9Y5H4 RAB17-201ENST00000264601 1966 ntAPPRIS P1 TSL 1 (best) BASIC16.14■□□□□ 0.17
PCDHGA1Q9Y5H4 AP003071.5-201ENST00000641568 2695 ntAPPRIS P1 BASIC16.14■□□□□ 0.17
PCDHGA1Q9Y5H4 CLDN4-201ENST00000340958 1831 ntAPPRIS P1 BASIC16.14■□□□□ 0.17
PCDHGA1Q9Y5H4 SLC39A7-201ENST00000374675 2153 ntAPPRIS P1 TSL 1 (best) BASIC16.14■□□□□ 0.17
PCDHGA1Q9Y5H4 RPN2-201ENST00000237530 2515 ntAPPRIS P1 TSL 1 (best) BASIC16.14■□□□□ 0.17
PCDHGA1Q9Y5H4 PGRMC2-208ENST00000613358 3783 ntTSL 1 (best) BASIC16.14■□□□□ 0.17
PCDHGA1Q9Y5H4 FOXD4L6-201ENST00000622588 2034 ntAPPRIS P1 BASIC16.14■□□□□ 0.17
PCDHGA1Q9Y5H4 BPGM-203ENST00000418040 1870 ntAPPRIS P1 TSL 5 BASIC16.14■□□□□ 0.17
PCDHGA1Q9Y5H4 CTSB-202ENST00000353047 3875 ntAPPRIS P1 TSL 1 (best) BASIC16.14■□□□□ 0.17
PCDHGA1Q9Y5H4 RAB4A-201ENST00000366690 2966 ntAPPRIS P1 TSL 1 (best) BASIC16.14■□□□□ 0.17
PCDHGA1Q9Y5H4 LUC7L-202ENST00000337351 2097 ntTSL 1 (best) BASIC16.14■□□□□ 0.17
PCDHGA1Q9Y5H4 NINL-201ENST00000278886 4969 ntAPPRIS P3 TSL 1 (best) BASIC16.14■□□□□ 0.17
PCDHGA1Q9Y5H4 KCNJ5-201ENST00000338350 1734 ntAPPRIS P1 TSL 1 (best) BASIC16.14■□□□□ 0.17
PCDHGA1Q9Y5H4 CCDC177-201ENST00000599174 4131 ntAPPRIS P1 TSL 3 BASIC16.13■□□□□ 0.17
PCDHGA1Q9Y5H4 ZDHHC4-205ENST00000396713 1552 ntAPPRIS P1 TSL 1 (best) BASIC16.13■□□□□ 0.17
PCDHGA1Q9Y5H4 AC073957.2-201ENST00000549241 1562 ntTSL 4 BASIC16.13■□□□□ 0.17
PCDHGA1Q9Y5H4 DNM1-211ENST00000627061 2724 ntTSL 5 BASIC16.13■□□□□ 0.17
PCDHGA1Q9Y5H4 PLA2G4C-222ENST00000599921 1984 ntAPPRIS P3 TSL 1 (best) BASIC16.13■□□□□ 0.17
PCDHGA1Q9Y5H4 ARHGEF18-201ENST00000319670 5212 ntAPPRIS P3 TSL 1 (best) BASIC16.13■□□□□ 0.17
PCDHGA1Q9Y5H4 TXNRD3-202ENST00000523403 2351 ntAPPRIS ALT2 TSL 2 BASIC16.13■□□□□ 0.17
PCDHGA1Q9Y5H4 SHANK1-201ENST00000293441 6643 ntAPPRIS P2 TSL 1 (best) BASIC16.13■□□□□ 0.17
PCDHGA1Q9Y5H4 PRELID3A-209ENST00000592149 2001 ntTSL 2 BASIC16.13■□□□□ 0.17
PCDHGA1Q9Y5H4 PTPA-201ENST00000337738 2845 ntTSL 2 BASIC16.13■□□□□ 0.17
PCDHGA1Q9Y5H4 MB-201ENST00000359787 1170 ntAPPRIS P1 TSL 2 BASIC16.13■□□□□ 0.17
PCDHGA1Q9Y5H4 KRTAP6-3-201ENST00000391624 636 ntAPPRIS P1 BASIC16.13■□□□□ 0.17
PCDHGA1Q9Y5H4 MB-202ENST00000397326 1197 ntAPPRIS P1 TSL 1 (best) BASIC16.13■□□□□ 0.17
PCDHGA1Q9Y5H4 MB-203ENST00000397328 1153 ntAPPRIS P1 TSL 1 (best) BASIC16.13■□□□□ 0.17
PCDHGA1Q9Y5H4 PTPA-213ENST00000419582 952 ntTSL 1 (best) BASIC16.13■□□□□ 0.17
PCDHGA1Q9Y5H4 HLA-V-201ENST00000429037 534 ntBASIC16.13■□□□□ 0.17
PCDHGA1Q9Y5H4 TATDN3-212ENST00000530441 492 ntTSL 3 BASIC16.13■□□□□ 0.17
PCDHGA1Q9Y5H4 AC026471.2-201ENST00000569782 655 ntTSL 2 BASIC16.13■□□□□ 0.17
PCDHGA1Q9Y5H4 UBE2E3-205ENST00000602475 602 ntTSL 3 BASIC16.13■□□□□ 0.17
PCDHGA1Q9Y5H4 FOLR3-204ENST00000611028 820 ntAPPRIS P1 TSL 1 (best) BASIC16.13■□□□□ 0.17
PCDHGA1Q9Y5H4 SPDYE12P-201ENST00000618416 771 ntBASIC16.13■□□□□ 0.17
PCDHGA1Q9Y5H4 RAB34-223ENST00000636154 730 ntTSL 2 BASIC16.13■□□□□ 0.17
PCDHGA1Q9Y5H4 AP2A2-222ENST00000534328 1491 ntTSL 5 BASIC16.13■□□□□ 0.17
PCDHGA1Q9Y5H4 SLC22A20-204ENST00000530038 1673 ntBASIC16.13■□□□□ 0.17
PCDHGA1Q9Y5H4 TRPM2-208ENST00000621064 1669 ntTSL 5 BASIC16.13■□□□□ 0.17
PCDHGA1Q9Y5H4 ZNF385A-202ENST00000352268 2076 ntTSL 2 BASIC16.13■□□□□ 0.17
PCDHGA1Q9Y5H4 KDM1A-202ENST00000400181 3059 ntAPPRIS ALT2 TSL 1 (best) BASIC16.13■□□□□ 0.17
PCDHGA1Q9Y5H4 ASB7-203ENST00000558747 2133 ntTSL 5 BASIC16.13■□□□□ 0.17
PCDHGA1Q9Y5H4 CGB7-202ENST00000596965 1949 ntAPPRIS P1 TSL 2 BASIC16.13■□□□□ 0.17
PCDHGA1Q9Y5H4 ACY3-201ENST00000255082 1300 ntAPPRIS P1 TSL 1 (best) BASIC16.13■□□□□ 0.17
PCDHGA1Q9Y5H4 PHRF1-205ENST00000533464 5218 ntAPPRIS ALT2 TSL 1 (best) BASIC16.13■□□□□ 0.17
PCDHGA1Q9Y5H4 TAL1-201ENST00000294339 5001 ntAPPRIS P1 TSL 1 (best) BASIC16.13■□□□□ 0.17
PCDHGA1Q9Y5H4 SNRPF-201ENST00000266735 1389 ntAPPRIS P1 TSL 1 (best) BASIC16.13■□□□□ 0.17
PCDHGA1Q9Y5H4 AL035456.1-201ENST00000456064 1369 ntBASIC16.13■□□□□ 0.17
PCDHGA1Q9Y5H4 FAM172A-206ENST00000509163 1369 ntTSL 2 BASIC16.13■□□□□ 0.17
PCDHGA1Q9Y5H4 PJA1-202ENST00000374571 2672 ntAPPRIS ALT2 TSL 1 (best) BASIC16.12■□□□□ 0.17
PCDHGA1Q9Y5H4 PIF1-205ENST00000559239 2677 ntAPPRIS P1 TSL 1 (best) BASIC16.12■□□□□ 0.17
PCDHGA1Q9Y5H4 SPRED2-206ENST00000443619 1800 ntAPPRIS P1 TSL 2 BASIC16.12■□□□□ 0.17
PCDHGA1Q9Y5H4 PPP2R2C-209ENST00000515571 1832 ntTSL 1 (best) BASIC16.12■□□□□ 0.17
PCDHGA1Q9Y5H4 ALMS1P1-202ENST00000450720 1601 ntTSL 1 (best) BASIC16.12■□□□□ 0.17
PCDHGA1Q9Y5H4 SAR1B-208ENST00000507419 2287 ntTSL 1 (best) BASIC16.12■□□□□ 0.17
PCDHGA1Q9Y5H4 TMEM147-AS1-203ENST00000589137 1627 ntTSL 1 (best) BASIC16.12■□□□□ 0.17
PCDHGA1Q9Y5H4 PPP2R2B-203ENST00000394411 2071 ntAPPRIS P1 TSL 2 BASIC16.12■□□□□ 0.17
PCDHGA1Q9Y5H4 TAP1-201ENST00000354258 2959 ntAPPRIS P1 TSL 1 (best) BASIC16.12■□□□□ 0.17
PCDHGA1Q9Y5H4 ZNF419-207ENST00000442920 1857 ntAPPRIS ALT2 TSL 2 BASIC16.12■□□□□ 0.17
PCDHGA1Q9Y5H4 KIF1BP-204ENST00000626493 2337 ntTSL 5 BASIC16.12■□□□□ 0.17
PCDHGA1Q9Y5H4 KCNQ2-205ENST00000360480 2775 ntAPPRIS ALT2 TSL 5 BASIC16.12■□□□□ 0.17
PCDHGA1Q9Y5H4 C19orf48-202ENST00000391812 1666 ntAPPRIS P1 TSL 2 BASIC16.12■□□□□ 0.17
PCDHGA1Q9Y5H4 MBD4-202ENST00000393278 1684 ntTSL 1 (best) BASIC16.12■□□□□ 0.17
PCDHGA1Q9Y5H4 SLC5A10-204ENST00000395647 2140 ntTSL 2 BASIC16.12■□□□□ 0.17
PCDHGA1Q9Y5H4 SDHA-213ENST00000510361 2148 ntTSL 2 BASIC16.12■□□□□ 0.17
PCDHGA1Q9Y5H4 RDM1-227ENST00000619876 1491 ntAPPRIS ALT2 TSL 2 BASIC16.12■□□□□ 0.17
PCDHGA1Q9Y5H4 MMD2-202ENST00000404774 2415 ntTSL 1 (best) BASIC16.12■□□□□ 0.17
PCDHGA1Q9Y5H4 AL355987.1-201ENST00000435202 2420 ntAPPRIS P1 TSL 2 BASIC16.12■□□□□ 0.17
PCDHGA1Q9Y5H4 TOMM5-201ENST00000321301 751 ntAPPRIS P1 TSL 1 (best) BASIC16.12■□□□□ 0.17
PCDHGA1Q9Y5H4 VHLL-201ENST00000339922 676 ntAPPRIS P1 BASIC16.12■□□□□ 0.17
PCDHGA1Q9Y5H4 NDUFB8-202ENST00000370320 684 ntTSL 3 BASIC16.12■□□□□ 0.17
PCDHGA1Q9Y5H4 SYNGR1-205ENST00000406293 564 ntTSL 2 BASIC16.12■□□□□ 0.17
PCDHGA1Q9Y5H4 SNHG17-203ENST00000417578 880 ntTSL 2 BASIC16.12■□□□□ 0.17
PCDHGA1Q9Y5H4 SHBG-204ENST00000441599 973 ntAPPRIS ALT2 TSL 1 (best) BASIC16.12■□□□□ 0.17
PCDHGA1Q9Y5H4 AL359815.1-201ENST00000457706 821 ntTSL 2 BASIC16.12■□□□□ 0.17
PCDHGA1Q9Y5H4 CD28-203ENST00000458610 705 ntTSL 1 (best) BASIC16.12■□□□□ 0.17
PCDHGA1Q9Y5H4 PSEN2-206ENST00000472139 1163 ntTSL 5 BASIC16.12■□□□□ 0.17
PCDHGA1Q9Y5H4 MRPL36-204ENST00000508987 686 ntAPPRIS P1 TSL 2 BASIC16.12■□□□□ 0.17
PCDHGA1Q9Y5H4 LEPROTL1-204ENST00000518192 847 ntTSL 3 BASIC16.12■□□□□ 0.17
PCDHGA1Q9Y5H4 MPI-209ENST00000564003 1195 ntTSL 2 BASIC16.12■□□□□ 0.17
PCDHGA1Q9Y5H4 TNFRSF13B-206ENST00000583789 859 ntTSL 1 (best) BASIC16.12■□□□□ 0.17
PCDHGA1Q9Y5H4 AC087645.2-202ENST00000586583 643 ntTSL 4 BASIC16.12■□□□□ 0.17
PCDHGA1Q9Y5H4 AC003101.2-201ENST00000612557 442 ntBASIC16.12■□□□□ 0.17
PCDHGA1Q9Y5H4 AL138828.2-201ENST00000615812 383 ntBASIC16.12■□□□□ 0.17
PCDHGA1Q9Y5H4 LRRC71-201ENST00000337428 1959 ntAPPRIS P1 TSL 1 (best) BASIC16.12■□□□□ 0.17
PCDHGA1Q9Y5H4 CLDN7-201ENST00000360325 1542 ntAPPRIS P1 TSL 1 (best) BASIC16.12■□□□□ 0.17
PCDHGA1Q9Y5H4 PPT2-247ENST00000375143 1754 ntAPPRIS ALT2 TSL 5 BASIC16.12■□□□□ 0.17
PCDHGA1Q9Y5H4 TMEM155-202ENST00000394394 1753 ntAPPRIS P2 TSL 3 BASIC16.12■□□□□ 0.17
PCDHGA1Q9Y5H4 ZYG11A-203ENST00000612017 3682 ntTSL 5 BASIC16.12■□□□□ 0.17
PCDHGA1Q9Y5H4 ORMDL1-203ENST00000392350 2009 ntAPPRIS P1 TSL 1 (best) BASIC16.12■□□□□ 0.17
PCDHGA1Q9Y5H4 CLN8-205ENST00000520991 1305 ntTSL 5 BASIC16.12■□□□□ 0.17
PCDHGA1Q9Y5H4 TDRKH-202ENST00000368823 2751 ntAPPRIS ALT1 TSL 2 BASIC16.12■□□□□ 0.17
PCDHGA1Q9Y5H4 AP3S2-216ENST00000617003 1561 ntBASIC16.12■□□□□ 0.17
Retrieved 100 of 98,524 protein–RNA pairs in 50.5 ms