Protein–RNA interactions for Protein: Q9UFE4

CCDC39, Coiled-coil domain-containing protein 39, humanhuman

Predictions only

Length 941 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC39Q9UFE4 AP000344.1-201ENST00000454268 641 ntTSL 5 BASIC19.59■□□□□ 0.73
CCDC39Q9UFE4 AP000344.1-202ENST00000457193 586 ntTSL 4 BASIC19.59■□□□□ 0.73
CCDC39Q9UFE4 KLHL21-204ENST00000467612 1056 ntTSL 3 BASIC19.59■□□□□ 0.73
CCDC39Q9UFE4 KRTCAP3-207ENST00000543753 956 ntAPPRIS P1 TSL 5 BASIC19.59■□□□□ 0.73
CCDC39Q9UFE4 PNN-202ENST00000553331 656 ntTSL 3 BASIC19.59■□□□□ 0.73
CCDC39Q9UFE4 AC138207.7-201ENST00000584499 668 ntTSL 5 BASIC19.59■□□□□ 0.73
CCDC39Q9UFE4 FUT6-212ENST00000592563 1095 ntTSL 1 (best) BASIC19.59■□□□□ 0.73
CCDC39Q9UFE4 NBPF14-202ENST00000593495 1082 ntAPPRIS P1 TSL 1 (best) BASIC19.59■□□□□ 0.73
CCDC39Q9UFE4 NDUFA6-204ENST00000617763 1183 ntTSL 1 (best) BASIC19.59■□□□□ 0.73
CCDC39Q9UFE4 CCNC-219ENST00000627680 896 ntTSL 5 BASIC19.59■□□□□ 0.73
CCDC39Q9UFE4 RDH12-201ENST00000267502 1833 ntAPPRIS P1 TSL 5 BASIC19.59■□□□□ 0.73
CCDC39Q9UFE4 KCNC2-209ENST00000550433 2931 ntAPPRIS ALT2 TSL 1 (best) BASIC19.59■□□□□ 0.73
CCDC39Q9UFE4 AL109955.1-201ENST00000417346 1540 ntTSL 2 BASIC19.59■□□□□ 0.73
CCDC39Q9UFE4 CCDC43-202ENST00000457422 2058 ntTSL 1 (best) BASIC19.59■□□□□ 0.73
CCDC39Q9UFE4 DLG4-201ENST00000302955 3184 ntAPPRIS P3 TSL 5 BASIC19.59■□□□□ 0.73
CCDC39Q9UFE4 MFF-201ENST00000304593 2004 ntAPPRIS P1 TSL 2 BASIC19.59■□□□□ 0.73
CCDC39Q9UFE4 TMEM132D-202ENST00000422113 5776 ntAPPRIS P1 TSL 1 (best) BASIC19.59■□□□□ 0.73
CCDC39Q9UFE4 RGS7-203ENST00000366564 2295 ntAPPRIS ALT2 TSL 1 (best) BASIC19.59■□□□□ 0.73
CCDC39Q9UFE4 ASB10-202ENST00000377867 1738 ntTSL 2 BASIC19.59■□□□□ 0.73
CCDC39Q9UFE4 LFNG-207ENST00000614382 1969 ntTSL 5 BASIC19.59■□□□□ 0.73
CCDC39Q9UFE4 ELF2-201ENST00000358635 3036 ntTSL 1 (best) BASIC19.59■□□□□ 0.73
CCDC39Q9UFE4 UGT8-201ENST00000310836 4084 ntAPPRIS P1 TSL 1 (best) BASIC19.59■□□□□ 0.73
CCDC39Q9UFE4 AP1S2-201ENST00000329235 2237 ntAPPRIS P1 TSL 1 (best) BASIC19.59■□□□□ 0.73
CCDC39Q9UFE4 B4GALT4-216ENST00000483209 2494 ntAPPRIS P1 TSL 1 (best) BASIC19.59■□□□□ 0.73
CCDC39Q9UFE4 UNKL-202ENST00000301712 1431 ntTSL 1 (best) BASIC19.59■□□□□ 0.73
CCDC39Q9UFE4 AC136759.1-201ENST00000534201 2163 ntTSL 2 BASIC19.59■□□□□ 0.73
CCDC39Q9UFE4 CD276-213ENST00000561213 2690 ntAPPRIS ALT2 TSL 2 BASIC19.59■□□□□ 0.73
CCDC39Q9UFE4 RGS6-210ENST00000553530 5685 ntAPPRIS P3 TSL 1 (best) BASIC19.58■□□□□ 0.73
CCDC39Q9UFE4 EGFR-203ENST00000344576 2864 ntTSL 1 (best) BASIC19.58■□□□□ 0.73
CCDC39Q9UFE4 DIRAS2-201ENST00000375765 4386 ntAPPRIS P1 TSL 1 (best) BASIC19.58■□□□□ 0.73
CCDC39Q9UFE4 CLDN4-201ENST00000340958 1831 ntAPPRIS P1 BASIC19.58■□□□□ 0.73
CCDC39Q9UFE4 CES4A-206ENST00000540579 1825 ntTSL 1 (best) BASIC19.58■□□□□ 0.73
CCDC39Q9UFE4 MYLK2-201ENST00000375985 2787 ntAPPRIS P1 TSL 1 (best) BASIC19.58■□□□□ 0.73
CCDC39Q9UFE4 PAX4-202ENST00000341640 2010 ntAPPRIS P2 TSL 1 (best) BASIC19.58■□□□□ 0.73
CCDC39Q9UFE4 TTC29-201ENST00000325106 1785 ntAPPRIS P3 TSL 1 (best) BASIC19.58■□□□□ 0.73
CCDC39Q9UFE4 TTC29-205ENST00000504425 1777 ntAPPRIS ALT2 TSL 5 BASIC19.58■□□□□ 0.73
CCDC39Q9UFE4 PSMD2-201ENST00000310118 3449 ntAPPRIS P1 TSL 1 (best) BASIC19.58■□□□□ 0.73
CCDC39Q9UFE4 TMPO-203ENST00000343315 2465 ntTSL 5 BASIC19.58■□□□□ 0.73
CCDC39Q9UFE4 FUOM-202ENST00000368551 628 ntTSL 3 BASIC19.58■□□□□ 0.72
CCDC39Q9UFE4 UPK3BP1-201ENST00000428678 509 ntBASIC19.58■□□□□ 0.72
CCDC39Q9UFE4 IFT27-205ENST00000433985 1095 ntAPPRIS ALT1 TSL 1 (best) BASIC19.58■□□□□ 0.72
CCDC39Q9UFE4 B4GALT1-AS1-202ENST00000442432 843 ntTSL 2 BASIC19.58■□□□□ 0.72
CCDC39Q9UFE4 NT5C2-211ENST00000470299 249 ntTSL 5 BASIC19.58■□□□□ 0.72
CCDC39Q9UFE4 EIF5A2-203ENST00000474096 570 ntTSL 4 BASIC19.58■□□□□ 0.72
CCDC39Q9UFE4 SURF4-206ENST00000485435 1206 ntTSL 1 (best) BASIC19.58■□□□□ 0.72
CCDC39Q9UFE4 ERCC5-207ENST00000535557 1125 ntTSL 5 BASIC19.58■□□□□ 0.72
CCDC39Q9UFE4 COX5A-202ENST00000562233 441 ntTSL 3 BASIC19.58■□□□□ 0.72
CCDC39Q9UFE4 SRSF1-209ENST00000585096 568 ntTSL 4 BASIC19.58■□□□□ 0.72
CCDC39Q9UFE4 CLDN6-202ENST00000396925 1739 ntAPPRIS P1 TSL 5 BASIC19.58■□□□□ 0.72
CCDC39Q9UFE4 LINC02012-201ENST00000608206 1725 ntBASIC19.58■□□□□ 0.72
CCDC39Q9UFE4 NDUFA11-205ENST00000592634 2154 ntTSL 2 BASIC19.58■□□□□ 0.72
CCDC39Q9UFE4 TUBB-206ENST00000330914 2632 ntTSL 2 BASIC19.58■□□□□ 0.72
CCDC39Q9UFE4 SEPT11-203ENST00000502584 2615 ntAPPRIS ALT1 TSL 5 BASIC19.58■□□□□ 0.72
CCDC39Q9UFE4 WDR90-202ENST00000315764 1454 ntTSL 1 (best) BASIC19.58■□□□□ 0.72
CCDC39Q9UFE4 CCDC90B-203ENST00000525503 1919 ntTSL 1 (best) BASIC19.58■□□□□ 0.72
CCDC39Q9UFE4 AC226118.1-201ENST00000515213 2146 ntTSL 2 BASIC19.58■□□□□ 0.72
CCDC39Q9UFE4 MAP3K13-212ENST00000448876 1681 ntTSL 1 (best) BASIC19.58■□□□□ 0.72
CCDC39Q9UFE4 TPD52L2-204ENST00000351424 2302 ntAPPRIS P4 TSL 2 BASIC19.58■□□□□ 0.72
CCDC39Q9UFE4 MARK3-204ENST00000416682 2969 ntTSL 1 (best) BASIC19.58■□□□□ 0.72
CCDC39Q9UFE4 CHKA-201ENST00000265689 2530 ntAPPRIS P4 TSL 1 (best) BASIC19.58■□□□□ 0.72
CCDC39Q9UFE4 APBB1-207ENST00000529519 1442 ntTSL 5 BASIC19.58■□□□□ 0.72
CCDC39Q9UFE4 TNKS1BP1-201ENST00000358252 5795 ntAPPRIS P2 TSL 1 (best) BASIC19.58■□□□□ 0.72
CCDC39Q9UFE4 SLIT3-201ENST00000332966 4895 ntAPPRIS ALT2 TSL 1 (best) BASIC19.58■□□□□ 0.72
CCDC39Q9UFE4 LINC01270-201ENST00000371639 2281 ntTSL 2 BASIC19.58■□□□□ 0.72
CCDC39Q9UFE4 LYPLAL1-201ENST00000366927 1819 ntTSL 1 (best) BASIC19.58■□□□□ 0.72
CCDC39Q9UFE4 AC132938.5-201ENST00000624980 1813 ntBASIC19.58■□□□□ 0.72
CCDC39Q9UFE4 ACTG1-208ENST00000575087 2001 ntAPPRIS P1 TSL 5 BASIC19.58■□□□□ 0.72
CCDC39Q9UFE4 IRF5-210ENST00000477535 1374 ntTSL 1 (best) BASIC19.57■□□□□ 0.72
CCDC39Q9UFE4 FAM237A-203ENST00000543490 1376 ntAPPRIS P1 TSL 5 BASIC19.57■□□□□ 0.72
CCDC39Q9UFE4 NKX3-1-201ENST00000380871 3271 ntAPPRIS P3 TSL 1 (best) BASIC19.57■□□□□ 0.72
CCDC39Q9UFE4 SBNO2-202ENST00000438103 4537 ntAPPRIS ALT2 TSL 2 BASIC19.57■□□□□ 0.72
CCDC39Q9UFE4 LAMC1-201ENST00000258341 7889 ntAPPRIS P1 TSL 1 (best) BASIC19.57■□□□□ 0.72
CCDC39Q9UFE4 C8orf46-215ENST00000522977 1347 ntTSL 2 BASIC19.57■□□□□ 0.72
CCDC39Q9UFE4 PDE9A-203ENST00000335440 1728 ntTSL 1 (best) BASIC19.57■□□□□ 0.72
CCDC39Q9UFE4 AC093525.9-201ENST00000624961 1746 ntBASIC19.57■□□□□ 0.72
CCDC39Q9UFE4 MFGE8-201ENST00000268150 1937 ntAPPRIS P1 TSL 1 (best) BASIC19.57■□□□□ 0.72
CCDC39Q9UFE4 AC026412.1-203ENST00000507841 2338 ntTSL 1 (best) BASIC19.57■□□□□ 0.72
CCDC39Q9UFE4 ZBTB17-216ENST00000537142 2511 ntTSL 2 BASIC19.57■□□□□ 0.72
CCDC39Q9UFE4 PLIN1-202ENST00000430628 2900 ntAPPRIS P1 TSL 5 BASIC19.57■□□□□ 0.72
CCDC39Q9UFE4 PURB-201ENST00000395699 9069 ntAPPRIS P1 BASIC19.57■□□□□ 0.72
CCDC39Q9UFE4 DNAJC28-203ENST00000402202 1480 ntAPPRIS P1 TSL 5 BASIC19.57■□□□□ 0.72
CCDC39Q9UFE4 TNFSF14-202ENST00000599359 1476 ntAPPRIS P1 TSL 1 (best) BASIC19.57■□□□□ 0.72
CCDC39Q9UFE4 PAFAH1B3-201ENST00000262890 1003 ntAPPRIS P1 TSL 1 (best) BASIC19.57■□□□□ 0.72
CCDC39Q9UFE4 MED30-201ENST00000297347 985 ntAPPRIS P1 TSL 1 (best) BASIC19.57■□□□□ 0.72
CCDC39Q9UFE4 CXCL12-204ENST00000395793 665 ntTSL 5 BASIC19.57■□□□□ 0.72
CCDC39Q9UFE4 AC068134.1-202ENST00000439072 356 ntTSL 5 BASIC19.57■□□□□ 0.72
CCDC39Q9UFE4 RAB6A-207ENST00000541588 758 ntTSL 1 (best) BASIC19.57■□□□□ 0.72
CCDC39Q9UFE4 YPEL3-204ENST00000563788 730 ntAPPRIS P1 TSL 3 BASIC19.57■□□□□ 0.72
CCDC39Q9UFE4 CPEB2-204ENST00000382401 5509 ntAPPRIS ALT2 TSL 1 (best) BASIC19.57■□□□□ 0.72
CCDC39Q9UFE4 SCAF8-201ENST00000367178 5057 ntAPPRIS P1 TSL 2 BASIC19.57■□□□□ 0.72
CCDC39Q9UFE4 NSDHL-203ENST00000440023 1630 ntAPPRIS P2 TSL 5 BASIC19.57■□□□□ 0.72
CCDC39Q9UFE4 ABLIM2-201ENST00000341937 2589 ntAPPRIS ALT2 TSL 1 (best) BASIC19.57■□□□□ 0.72
CCDC39Q9UFE4 MON2-201ENST00000393629 5612 ntTSL 1 (best) BASIC19.57■□□□□ 0.72
CCDC39Q9UFE4 IL2RG-202ENST00000374188 1432 ntTSL 5 BASIC19.57■□□□□ 0.72
CCDC39Q9UFE4 MOV10L1-203ENST00000395852 1422 ntTSL 2 BASIC19.57■□□□□ 0.72
CCDC39Q9UFE4 FN1-208ENST00000426059 2388 ntTSL 1 (best) BASIC19.57■□□□□ 0.72
CCDC39Q9UFE4 ZNF7-207ENST00000528372 2905 ntAPPRIS P3 TSL 1 (best) BASIC19.57■□□□□ 0.72
CCDC39Q9UFE4 RGL2-247ENST00000497454 3278 ntAPPRIS P1 TSL 1 (best) BASIC19.57■□□□□ 0.72
CCDC39Q9UFE4 TMTC2-203ENST00000548305 2682 ntTSL 1 (best) BASIC19.57■□□□□ 0.72
CCDC39Q9UFE4 GIGYF1-201ENST00000275732 6530 ntAPPRIS P1 TSL 1 (best) BASIC19.57■□□□□ 0.72
Retrieved 100 of 98,524 protein–RNA pairs in 33.8 ms