Protein–RNA interactions for Protein: Q8NDQ6

ZNF540, Zinc finger protein 540, humanhuman

Predictions only

Length 660 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
ZNF540Q8NDQ6 BX088651.4-201ENST00000435586 2579 ntTSL 2 BASIC15.71■□□□□ 0.1
ZNF540Q8NDQ6 ASIC1-202ENST00000447966 3778 ntAPPRIS P1 TSL 1 (best) BASIC15.71■□□□□ 0.1
ZNF540Q8NDQ6 HES1-201ENST00000232424 1578 ntAPPRIS P1 TSL 1 (best) BASIC15.7■□□□□ 0.1
ZNF540Q8NDQ6 SLC7A9-202ENST00000587772 1568 ntAPPRIS P1 TSL 1 (best) BASIC15.7■□□□□ 0.1
ZNF540Q8NDQ6 LYRM9-203ENST00000460380 2196 ntTSL 2 BASIC15.7■□□□□ 0.1
ZNF540Q8NDQ6 AC097376.2-201ENST00000608661 2510 ntTSL 5 BASIC15.7■□□□□ 0.1
ZNF540Q8NDQ6 FOXP3-202ENST00000376199 2274 ntTSL 2 BASIC15.7■□□□□ 0.1
ZNF540Q8NDQ6 CHRM2-201ENST00000320658 1694 ntAPPRIS P1 TSL 1 (best) BASIC15.7■□□□□ 0.1
ZNF540Q8NDQ6 MAP3K13-212ENST00000448876 1681 ntTSL 1 (best) BASIC15.7■□□□□ 0.1
ZNF540Q8NDQ6 ARL15-201ENST00000502271 3248 ntTSL 1 (best) BASIC15.7■□□□□ 0.1
ZNF540Q8NDQ6 AC023824.1-201ENST00000562945 2975 ntBASIC15.7■□□□□ 0.1
ZNF540Q8NDQ6 PTGER3-202ENST00000351052 1404 ntAPPRIS ALT2 TSL 5 BASIC15.7■□□□□ 0.1
ZNF540Q8NDQ6 ABHD11-205ENST00000437775 1447 ntAPPRIS ALT2 TSL 1 (best) BASIC15.7■□□□□ 0.1
ZNF540Q8NDQ6 AC010478.1-202ENST00000559112 2367 ntTSL 2 BASIC15.7■□□□□ 0.1
ZNF540Q8NDQ6 ESPNL-201ENST00000343063 4836 ntAPPRIS P1 TSL 2 BASIC15.7■□□□□ 0.1
ZNF540Q8NDQ6 TNFRSF14-AS1-202ENST00000432521 3608 ntTSL 2 BASIC15.7■□□□□ 0.1
ZNF540Q8NDQ6 PDE4C-207ENST00000594617 4655 ntAPPRIS P3 TSL 1 (best) BASIC15.7■□□□□ 0.1
ZNF540Q8NDQ6 CCDC127-201ENST00000296824 9342 ntAPPRIS P1 TSL 1 (best) BASIC15.7■□□□□ 0.1
ZNF540Q8NDQ6 TTC24-202ENST00000368237 1969 ntAPPRIS P1 TSL 5 BASIC15.7■□□□□ 0.1
ZNF540Q8NDQ6 FXN-203ENST00000396366 922 ntTSL 2 BASIC15.7■□□□□ 0.1
ZNF540Q8NDQ6 ELOB-202ENST00000409477 997 ntTSL 1 (best) BASIC15.7■□□□□ 0.1
ZNF540Q8NDQ6 ATP5G2P1-201ENST00000433580 426 ntBASIC15.7■□□□□ 0.1
ZNF540Q8NDQ6 PVRIG2P-201ENST00000435460 978 ntBASIC15.7■□□□□ 0.1
ZNF540Q8NDQ6 MHENCR-202ENST00000449500 801 ntTSL 2 BASIC15.7■□□□□ 0.1
ZNF540Q8NDQ6 MRPL2-208ENST00000489623 570 ntTSL 2 BASIC15.7■□□□□ 0.1
ZNF540Q8NDQ6 PP7080-204ENST00000510714 601 ntTSL 3 BASIC15.7■□□□□ 0.1
ZNF540Q8NDQ6 NAPSB-203ENST00000531692 561 ntTSL 2 BASIC15.7■□□□□ 0.1
ZNF540Q8NDQ6 C12orf43-206ENST00000537817 1270 ntAPPRIS ALT2 TSL 1 (best) BASIC15.7■□□□□ 0.1
ZNF540Q8NDQ6 SPAG7-207ENST00000575142 1094 ntTSL 1 (best) BASIC15.7■□□□□ 0.1
ZNF540Q8NDQ6 C16orf74-203ENST00000602675 744 ntAPPRIS ALT2 TSL 1 (best) BASIC15.7■□□□□ 0.1
ZNF540Q8NDQ6 SETD3-209ENST00000630307 1281 ntTSL 5 BASIC15.7■□□□□ 0.1
ZNF540Q8NDQ6 PDE1C-202ENST00000396182 2420 ntTSL 1 (best) BASIC15.7■□□□□ 0.1
ZNF540Q8NDQ6 QRFPR-202ENST00000394427 1708 ntAPPRIS P1 TSL 1 (best) BASIC15.7■□□□□ 0.1
ZNF540Q8NDQ6 CNGB1-201ENST00000251102 5641 ntAPPRIS P3 TSL 1 (best) BASIC15.7■□□□□ 0.1
ZNF540Q8NDQ6 LARP6-201ENST00000299213 4469 ntAPPRIS P1 TSL 1 (best) BASIC15.7■□□□□ 0.1
ZNF540Q8NDQ6 PCCB-207ENST00000466072 1844 ntAPPRIS ALT2 TSL 3 BASIC15.7■□□□□ 0.1
ZNF540Q8NDQ6 SPAG1-202ENST00000388798 3852 ntAPPRIS P1 TSL 1 (best) BASIC15.7■□□□□ 0.1
ZNF540Q8NDQ6 RTN4RL1-201ENST00000331238 3625 ntAPPRIS P1 TSL 1 (best) BASIC15.7■□□□□ 0.1
ZNF540Q8NDQ6 CROCC-201ENST00000375541 6656 ntAPPRIS P1 TSL 5 BASIC15.7■□□□□ 0.1
ZNF540Q8NDQ6 ADAM9-206ENST00000481513 2387 ntTSL 2 BASIC15.7■□□□□ 0.1
ZNF540Q8NDQ6 RNF182-206ENST00000537388 3274 ntAPPRIS P1 TSL 2 BASIC15.7■□□□□ 0.1
ZNF540Q8NDQ6 SLC16A3-211ENST00000581287 4830 ntAPPRIS P1 TSL 1 (best) BASIC15.7■□□□□ 0.1
ZNF540Q8NDQ6 GFM1-208ENST00000478576 2147 ntTSL 2 BASIC15.7■□□□□ 0.1
ZNF540Q8NDQ6 ARHGEF25-202ENST00000333972 2246 ntAPPRIS P1 TSL 1 (best) BASIC15.7■□□□□ 0.1
ZNF540Q8NDQ6 SMG1P3-206ENST00000522841 2774 ntTSL 2 BASIC15.7■□□□□ 0.1
ZNF540Q8NDQ6 MEG3-206ENST00000423456 1771 ntTSL 2 BASIC15.7■□□□□ 0.1
ZNF540Q8NDQ6 ZSWIM8-201ENST00000398706 6062 ntTSL 2 BASIC15.69■□□□□ 0.1
ZNF540Q8NDQ6 BAG5-202ENST00000337322 1960 ntTSL 1 (best) BASIC15.69■□□□□ 0.1
ZNF540Q8NDQ6 RUFY2-205ENST00000454950 2613 ntTSL 2 BASIC15.69■□□□□ 0.1
ZNF540Q8NDQ6 FUS-201ENST00000254108 5119 ntAPPRIS P3 TSL 1 (best) BASIC15.69■□□□□ 0.1
ZNF540Q8NDQ6 PHACTR3-204ENST00000371015 2728 ntAPPRIS P1 TSL 1 (best) BASIC15.69■□□□□ 0.1
ZNF540Q8NDQ6 DCAF11-217ENST00000559115 2711 ntAPPRIS P1 TSL 1 (best) BASIC15.69■□□□□ 0.1
ZNF540Q8NDQ6 LITAF-202ENST00000381810 1527 ntTSL 5 BASIC15.69■□□□□ 0.1
ZNF540Q8NDQ6 HCG18-233ENST00000412685 2552 ntTSL 2 BASIC15.69■□□□□ 0.1
ZNF540Q8NDQ6 PPAN-P2RY11-202ENST00000428358 2661 ntTSL 2 BASIC15.69■□□□□ 0.1
ZNF540Q8NDQ6 IFT27-201ENST00000340630 1113 ntAPPRIS P3 TSL 1 (best) BASIC15.69■□□□□ 0.1
ZNF540Q8NDQ6 PCDH19-202ENST00000373034 9756 ntAPPRIS ALT2 TSL 1 (best) BASIC15.69■□□□□ 0.1
ZNF540Q8NDQ6 INSL3-202ENST00000379695 899 ntTSL 1 (best) BASIC15.69■□□□□ 0.1
ZNF540Q8NDQ6 PDLIM7-205ENST00000393551 1226 ntTSL 1 (best) BASIC15.69■□□□□ 0.1
ZNF540Q8NDQ6 SMYD3-204ENST00000403792 1209 ntTSL 1 (best) BASIC15.69■□□□□ 0.1
ZNF540Q8NDQ6 MARK3-204ENST00000416682 2969 ntTSL 1 (best) BASIC15.69■□□□□ 0.1
ZNF540Q8NDQ6 BECN2-201ENST00000419583 1296 ntAPPRIS P1 BASIC15.69■□□□□ 0.1
ZNF540Q8NDQ6 AP005717.1-202ENST00000523563 419 ntTSL 3 BASIC15.69■□□□□ 0.1
ZNF540Q8NDQ6 MIR3917-201ENST00000580971 93 ntBASIC15.69■□□□□ 0.1
ZNF540Q8NDQ6 C1QTNF1-209ENST00000581774 1368 ntAPPRIS P1 TSL 1 (best) BASIC15.69■□□□□ 0.1
ZNF540Q8NDQ6 FAM228B-210ENST00000615575 1357 ntAPPRIS P3 TSL 5 BASIC15.69■□□□□ 0.1
ZNF540Q8NDQ6 KRT2-201ENST00000309680 2403 ntAPPRIS P1 TSL 1 (best) BASIC15.69■□□□□ 0.1
ZNF540Q8NDQ6 C2orf81-206ENST00000640868 2407 ntAPPRIS ALT2 BASIC15.69■□□□□ 0.1
ZNF540Q8NDQ6 SLC46A2-201ENST00000374228 2502 ntAPPRIS P1 TSL 1 (best) BASIC15.69■□□□□ 0.1
ZNF540Q8NDQ6 ARHGAP8-202ENST00000356099 1584 ntAPPRIS P3 TSL 1 (best) BASIC15.69■□□□□ 0.1
ZNF540Q8NDQ6 SYNRG-223ENST00000616179 4050 ntAPPRIS ALT2 TSL 5 BASIC15.69■□□□□ 0.1
ZNF540Q8NDQ6 GRK6-202ENST00000355958 1789 ntAPPRIS ALT1 TSL 1 (best) BASIC15.69■□□□□ 0.1
ZNF540Q8NDQ6 EPS8L2-201ENST00000318562 3148 ntAPPRIS P2 TSL 1 (best) BASIC15.69■□□□□ 0.1
ZNF540Q8NDQ6 SH3BP5-203ENST00000408919 1880 ntTSL 1 (best) BASIC15.69■□□□□ 0.1
ZNF540Q8NDQ6 STXBP2-202ENST00000414284 1859 ntAPPRIS ALT1 TSL 1 (best) BASIC15.69■□□□□ 0.1
ZNF540Q8NDQ6 ROBO1-209ENST00000495273 5600 ntAPPRIS P3 TSL 1 (best) BASIC15.69■□□□□ 0.1
ZNF540Q8NDQ6 YARS-201ENST00000373477 3238 ntAPPRIS P1 TSL 1 (best) BASIC15.69■□□□□ 0.1
ZNF540Q8NDQ6 ARHGAP39-201ENST00000276826 4697 ntAPPRIS ALT2 TSL 2 BASIC15.69■□□□□ 0.1
ZNF540Q8NDQ6 GDA-201ENST00000238018 2074 ntTSL 1 (best) BASIC15.69■□□□□ 0.1
ZNF540Q8NDQ6 DOLK-201ENST00000372586 2090 ntAPPRIS P1 BASIC15.69■□□□□ 0.1
ZNF540Q8NDQ6 CYP46A1-201ENST00000261835 2181 ntAPPRIS P1 TSL 1 (best) BASIC15.69■□□□□ 0.1
ZNF540Q8NDQ6 TPD52L2-201ENST00000217121 2362 ntTSL 2 BASIC15.69■□□□□ 0.1
ZNF540Q8NDQ6 DLG4-201ENST00000302955 3184 ntAPPRIS P3 TSL 5 BASIC15.69■□□□□ 0.1
ZNF540Q8NDQ6 FBXL5-201ENST00000341285 3385 ntAPPRIS P3 TSL 1 (best) BASIC15.69■□□□□ 0.1
ZNF540Q8NDQ6 CHD4-210ENST00000544040 6514 ntAPPRIS ALT2 TSL 5 BASIC15.68■□□□□ 0.1
ZNF540Q8NDQ6 NTMT1-203ENST00000372483 1315 ntAPPRIS P1 TSL 1 (best) BASIC15.68■□□□□ 0.1
ZNF540Q8NDQ6 AKIRIN1-201ENST00000372984 1330 ntTSL 2 BASIC15.68■□□□□ 0.1
ZNF540Q8NDQ6 WNT5B-203ENST00000537031 1437 ntAPPRIS P1 TSL 2 BASIC15.68■□□□□ 0.1
ZNF540Q8NDQ6 DMKN-213ENST00000447113 1611 ntAPPRIS ALT2 TSL 1 (best) BASIC15.68■□□□□ 0.1
ZNF540Q8NDQ6 ACE-202ENST00000290866 4959 ntAPPRIS P1 TSL 1 (best) BASIC15.68■□□□□ 0.1
ZNF540Q8NDQ6 PHYH-202ENST00000396913 1732 ntTSL 5 BASIC15.68■□□□□ 0.1
ZNF540Q8NDQ6 HOXC5-201ENST00000312492 1805 ntAPPRIS P1 TSL 1 (best) BASIC15.68■□□□□ 0.1
ZNF540Q8NDQ6 MAP3K7CL-206ENST00000399928 1904 ntAPPRIS P1 TSL 1 (best) BASIC15.68■□□□□ 0.1
ZNF540Q8NDQ6 SPATA20-202ENST00000356488 2634 ntTSL 1 (best) BASIC15.68■□□□□ 0.1
ZNF540Q8NDQ6 COL4A3BP-204ENST00000405807 2843 ntAPPRIS P1 TSL 5 BASIC15.68■□□□□ 0.1
ZNF540Q8NDQ6 PITPNM1-202ENST00000436757 4216 ntAPPRIS ALT1 TSL 1 (best) BASIC15.68■□□□□ 0.1
ZNF540Q8NDQ6 PGBD5-201ENST00000391860 10961 ntAPPRIS P1 TSL 1 (best) BASIC15.68■□□□□ 0.1
ZNF540Q8NDQ6 HLA-A-202ENST00000376806 1854 ntBASIC15.68■□□□□ 0.1
ZNF540Q8NDQ6 GFAP-233ENST00000639277 1783 ntTSL 5 BASIC15.68■□□□□ 0.1
ZNF540Q8NDQ6 TLCD1-201ENST00000292090 1017 ntAPPRIS P1 TSL 1 (best) BASIC15.68■□□□□ 0.1
Retrieved 100 of 98,524 protein–RNA pairs in 38.7 ms