Protein–RNA interactions for Protein: Q8IVD9

NUDCD3, NudC domain-containing protein 3, humanhuman

Predictions only

Length 361 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
NUDCD3Q8IVD9 C14orf93-205ENST00000397379 1949 ntAPPRIS P1 TSL 1 (best) BASIC16.82■□□□□ 0.28
NUDCD3Q8IVD9 CD34-202ENST00000356522 2874 ntTSL 1 (best) BASIC16.82■□□□□ 0.28
NUDCD3Q8IVD9 SRCIN1-215ENST00000621492 4644 ntAPPRIS ALT2 TSL 5 BASIC16.82■□□□□ 0.28
NUDCD3Q8IVD9 WNT10B-203ENST00000407467 1802 ntTSL 2 BASIC16.82■□□□□ 0.28
NUDCD3Q8IVD9 LTK-204ENST00000561619 1821 ntAPPRIS ALT2 TSL 1 (best) BASIC16.82■□□□□ 0.28
NUDCD3Q8IVD9 OAZ2-207ENST00000560258 1744 ntTSL 5 BASIC16.82■□□□□ 0.28
NUDCD3Q8IVD9 CEACAM21-203ENST00000407170 1691 ntTSL 2 BASIC16.81■□□□□ 0.28
NUDCD3Q8IVD9 ARL6IP1-201ENST00000304414 2409 ntAPPRIS P1 TSL 1 (best) BASIC16.81■□□□□ 0.28
NUDCD3Q8IVD9 MBD1-204ENST00000347968 3091 ntTSL 1 (best) BASIC16.81■□□□□ 0.28
NUDCD3Q8IVD9 SYDE1-204ENST00000600440 3058 ntTSL 1 (best) BASIC16.81■□□□□ 0.28
NUDCD3Q8IVD9 NFATC3-222ENST00000575270 3824 ntTSL 5 BASIC16.81■□□□□ 0.28
NUDCD3Q8IVD9 EWSR1-201ENST00000331029 2267 ntTSL 5 BASIC16.81■□□□□ 0.28
NUDCD3Q8IVD9 TLE2-203ENST00000443826 2238 ntTSL 2 BASIC16.81■□□□□ 0.28
NUDCD3Q8IVD9 MYB-201ENST00000316528 3571 ntTSL 5 BASIC16.81■□□□□ 0.28
NUDCD3Q8IVD9 MYB-241ENST00000616088 3573 ntTSL 5 BASIC16.81■□□□□ 0.28
NUDCD3Q8IVD9 ST3GAL3-205ENST00000347631 1324 ntTSL 5 BASIC16.81■□□□□ 0.28
NUDCD3Q8IVD9 VWA2-203ENST00000603594 2600 ntTSL 2 BASIC16.81■□□□□ 0.28
NUDCD3Q8IVD9 GSAP-201ENST00000257626 3251 ntAPPRIS P1 TSL 1 (best) BASIC16.81■□□□□ 0.28
NUDCD3Q8IVD9 FGF8-202ENST00000344255 707 ntTSL 1 (best) BASIC16.81■□□□□ 0.28
NUDCD3Q8IVD9 CD9-202ENST00000382515 1229 ntTSL 5 BASIC16.81■□□□□ 0.28
NUDCD3Q8IVD9 MEG3-211ENST00000452514 461 ntTSL 3 BASIC16.81■□□□□ 0.28
NUDCD3Q8IVD9 ENDOV-205ENST00000518644 625 ntTSL 4 BASIC16.81■□□□□ 0.28
NUDCD3Q8IVD9 IFI27L1-206ENST00000554562 571 ntTSL 3 BASIC16.81■□□□□ 0.28
NUDCD3Q8IVD9 YIPF2-209ENST00000590329 958 ntTSL 5 BASIC16.81■□□□□ 0.28
NUDCD3Q8IVD9 CIRBP-235ENST00000591935 746 ntAPPRIS ALT1 TSL 3 BASIC16.81■□□□□ 0.28
NUDCD3Q8IVD9 AC008687.7-201ENST00000593309 920 ntTSL 1 (best) BASIC16.81■□□□□ 0.28
NUDCD3Q8IVD9 NFIB-212ENST00000622520 1274 ntTSL 5 BASIC16.81■□□□□ 0.28
NUDCD3Q8IVD9 PYCR1-201ENST00000329875 1855 ntAPPRIS P1 TSL 1 (best) BASIC16.81■□□□□ 0.28
NUDCD3Q8IVD9 MMP15-201ENST00000219271 4250 ntAPPRIS P1 TSL 1 (best) BASIC16.81■□□□□ 0.28
NUDCD3Q8IVD9 CHN1-205ENST00000409900 2447 ntAPPRIS P1 TSL 1 (best) BASIC16.81■□□□□ 0.28
NUDCD3Q8IVD9 TAF1B-201ENST00000263663 2387 ntAPPRIS P1 TSL 1 (best) BASIC16.81■□□□□ 0.28
NUDCD3Q8IVD9 TGIF1-205ENST00000401449 1670 ntTSL 2 BASIC16.81■□□□□ 0.28
NUDCD3Q8IVD9 GUCA1A-203ENST00000394237 2233 ntAPPRIS P1 TSL 2 BASIC16.81■□□□□ 0.28
NUDCD3Q8IVD9 CYP2U1-201ENST00000332884 4944 ntAPPRIS P1 TSL 1 (best) BASIC16.81■□□□□ 0.28
NUDCD3Q8IVD9 SHANK3-201ENST00000262795 7091 ntAPPRIS P5 TSL 5 BASIC16.81■□□□□ 0.28
NUDCD3Q8IVD9 MBD4-206ENST00000507208 2194 ntAPPRIS ALT2 TSL 2 BASIC16.81■□□□□ 0.28
NUDCD3Q8IVD9 KLHL36-204ENST00000564996 2173 ntAPPRIS P1 TSL 1 (best) BASIC16.81■□□□□ 0.28
NUDCD3Q8IVD9 MED25-202ENST00000538643 1623 ntTSL 1 (best) BASIC16.81■□□□□ 0.28
NUDCD3Q8IVD9 AC004233.2-201ENST00000573315 2062 ntAPPRIS P1 TSL 5 BASIC16.81■□□□□ 0.28
NUDCD3Q8IVD9 FAM189B-202ENST00000361361 3082 ntAPPRIS P1 TSL 1 (best) BASIC16.81■□□□□ 0.28
NUDCD3Q8IVD9 HAPLN3-204ENST00000562889 1547 ntTSL 5 BASIC16.8■□□□□ 0.28
NUDCD3Q8IVD9 BAG5-202ENST00000337322 1960 ntTSL 1 (best) BASIC16.8■□□□□ 0.28
NUDCD3Q8IVD9 RUSC1-203ENST00000368349 1968 ntAPPRIS P3 TSL 1 (best) BASIC16.8■□□□□ 0.28
NUDCD3Q8IVD9 NFATC4-223ENST00000555802 1476 ntTSL 1 (best) BASIC16.8■□□□□ 0.28
NUDCD3Q8IVD9 MDFIC-202ENST00000393486 4393 ntAPPRIS P1 TSL 1 (best) BASIC16.8■□□□□ 0.28
NUDCD3Q8IVD9 BTN3A1-204ENST00000425234 1882 ntTSL 2 BASIC16.8■□□□□ 0.28
NUDCD3Q8IVD9 TINF2-208ENST00000558566 1874 ntAPPRIS ALT2 TSL 2 BASIC16.8■□□□□ 0.28
NUDCD3Q8IVD9 TPD52L2-204ENST00000351424 2302 ntAPPRIS P4 TSL 2 BASIC16.8■□□□□ 0.28
NUDCD3Q8IVD9 TNKS1BP1-207ENST00000532437 5952 ntAPPRIS P2 TSL 1 (best) BASIC16.8■□□□□ 0.28
NUDCD3Q8IVD9 PORCN-205ENST00000367574 1368 ntAPPRIS ALT1 TSL 1 (best) BASIC16.8■□□□□ 0.28
NUDCD3Q8IVD9 PORCN-214ENST00000537758 1371 ntAPPRIS ALT1 TSL 1 (best) BASIC16.8■□□□□ 0.28
NUDCD3Q8IVD9 MYH14-210ENST00000601313 6896 ntAPPRIS ALT2 TSL 1 (best) BASIC16.8■□□□□ 0.28
NUDCD3Q8IVD9 CLCF1-201ENST00000312438 1844 ntAPPRIS P3 TSL 1 (best) BASIC16.8■□□□□ 0.28
NUDCD3Q8IVD9 AL136309.2-201ENST00000427049 2277 ntTSL 2 BASIC16.8■□□□□ 0.28
NUDCD3Q8IVD9 PEA15-202ENST00000368076 2694 ntTSL 2 BASIC16.8■□□□□ 0.28
NUDCD3Q8IVD9 CDK11B-204ENST00000407249 2677 ntTSL 1 (best) BASIC16.8■□□□□ 0.28
NUDCD3Q8IVD9 OSBPL9-222ENST00000531828 2210 ntTSL 5 BASIC16.8■□□□□ 0.28
NUDCD3Q8IVD9 BCAS3-204ENST00000585744 2203 ntAPPRIS ALT2 TSL 5 BASIC16.8■□□□□ 0.28
NUDCD3Q8IVD9 TMEM145-201ENST00000301204 1768 ntAPPRIS P2 TSL 2 BASIC16.8■□□□□ 0.28
NUDCD3Q8IVD9 APAF1-203ENST00000359972 7029 ntAPPRIS ALT1 TSL 1 (best) BASIC16.8■□□□□ 0.28
NUDCD3Q8IVD9 TERF1P1-201ENST00000311003 1181 ntBASIC16.8■□□□□ 0.28
NUDCD3Q8IVD9 AC113347.1-201ENST00000413321 391 ntBASIC16.8■□□□□ 0.28
NUDCD3Q8IVD9 AL845331.1-201ENST00000424978 1190 ntBASIC16.8■□□□□ 0.28
NUDCD3Q8IVD9 HLA-J-202ENST00000469281 1241 ntBASIC16.8■□□□□ 0.28
NUDCD3Q8IVD9 AC136604.3-201ENST00000508188 429 ntTSL 3 BASIC16.8■□□□□ 0.28
NUDCD3Q8IVD9 LY6E-213ENST00000522528 606 ntTSL 3 BASIC16.8■□□□□ 0.28
NUDCD3Q8IVD9 AC016590.1-204ENST00000586442 813 ntTSL 5 BASIC16.8■□□□□ 0.28
NUDCD3Q8IVD9 AC005363.2-201ENST00000618631 242 ntBASIC16.8■□□□□ 0.28
NUDCD3Q8IVD9 LRRC61-201ENST00000323078 1684 ntAPPRIS P1 TSL 1 (best) BASIC16.8■□□□□ 0.28
NUDCD3Q8IVD9 AC005052.1-201ENST00000625181 2492 ntBASIC16.8■□□□□ 0.28
NUDCD3Q8IVD9 TRIM14-201ENST00000341469 4454 ntAPPRIS P1 TSL 1 (best) BASIC16.8■□□□□ 0.28
NUDCD3Q8IVD9 AC063926.3-201ENST00000624734 5658 ntBASIC16.8■□□□□ 0.28
NUDCD3Q8IVD9 KRT2-201ENST00000309680 2403 ntAPPRIS P1 TSL 1 (best) BASIC16.8■□□□□ 0.28
NUDCD3Q8IVD9 NRXN1-229ENST00000628515 3243 ntTSL 5 BASIC16.8■□□□□ 0.28
NUDCD3Q8IVD9 UCKL1-203ENST00000369908 1954 ntAPPRIS P1 TSL 2 BASIC16.8■□□□□ 0.28
NUDCD3Q8IVD9 TCP10-201ENST00000366827 2250 ntAPPRIS ALT2 TSL 5 BASIC16.8■□□□□ 0.28
NUDCD3Q8IVD9 PODNL1-201ENST00000254320 1859 ntTSL 2 BASIC16.8■□□□□ 0.28
NUDCD3Q8IVD9 CPEB2-203ENST00000382395 5524 ntAPPRIS ALT2 TSL 1 (best) BASIC16.8■□□□□ 0.28
NUDCD3Q8IVD9 WDR88-202ENST00000361680 1835 ntAPPRIS ALT2 TSL 1 (best) BASIC16.8■□□□□ 0.28
NUDCD3Q8IVD9 GPS1-228ENST00000624957 1825 ntAPPRIS ALT1 TSL 5 BASIC16.8■□□□□ 0.28
NUDCD3Q8IVD9 MAPKAP1-202ENST00000350766 3256 ntTSL 1 (best) BASIC16.8■□□□□ 0.28
NUDCD3Q8IVD9 PCM1-206ENST00000518537 2171 ntTSL 1 (best) BASIC16.79■□□□□ 0.28
NUDCD3Q8IVD9 KCNT1-214ENST00000631073 3948 ntAPPRIS ALT2 TSL 5 BASIC16.79■□□□□ 0.28
NUDCD3Q8IVD9 EPHX4-201ENST00000370383 1437 ntAPPRIS P1 TSL 1 (best) BASIC16.79■□□□□ 0.28
NUDCD3Q8IVD9 JMJD7-201ENST00000397299 1416 ntAPPRIS P1 TSL 1 (best) BASIC16.79■□□□□ 0.28
NUDCD3Q8IVD9 CRB3-203ENST00000598494 1443 ntAPPRIS ALT2 TSL 2 BASIC16.79■□□□□ 0.28
NUDCD3Q8IVD9 MGME1-201ENST00000377704 1781 ntTSL 3 BASIC16.79■□□□□ 0.28
NUDCD3Q8IVD9 APLNR-203ENST00000611099 1789 ntAPPRIS P1 TSL 1 (best) BASIC16.79■□□□□ 0.28
NUDCD3Q8IVD9 PPEF2-207ENST00000621010 1797 ntTSL 1 (best) BASIC16.79■□□□□ 0.28
NUDCD3Q8IVD9 PTPRS-205ENST00000588012 5993 ntAPPRIS P3 TSL 1 (best) BASIC16.79■□□□□ 0.28
NUDCD3Q8IVD9 AL121845.3-201ENST00000490623 3119 ntTSL 5 BASIC16.79■□□□□ 0.28
NUDCD3Q8IVD9 CCNA2-202ENST00000618014 2797 ntAPPRIS P1 TSL 1 (best) BASIC16.79■□□□□ 0.28
NUDCD3Q8IVD9 SIL1-213ENST00000509534 1714 ntTSL 5 BASIC16.79■□□□□ 0.28
NUDCD3Q8IVD9 TMTC2-203ENST00000548305 2682 ntTSL 1 (best) BASIC16.79■□□□□ 0.28
NUDCD3Q8IVD9 LCE3C-201ENST00000333881 425 ntAPPRIS P1 BASIC16.79■□□□□ 0.28
NUDCD3Q8IVD9 ANKRD37-201ENST00000335174 1141 ntAPPRIS P1 TSL 1 (best) BASIC16.79■□□□□ 0.28
NUDCD3Q8IVD9 CLDN7-202ENST00000397317 1228 ntAPPRIS P1 TSL 1 (best) BASIC16.79■□□□□ 0.28
NUDCD3Q8IVD9 SMIM11A-202ENST00000399295 1074 ntAPPRIS P1 TSL 2 BASIC16.79■□□□□ 0.28
NUDCD3Q8IVD9 TSPY22P-201ENST00000427496 604 ntBASIC16.79■□□□□ 0.28
NUDCD3Q8IVD9 SPDYE13P-201ENST00000445314 798 ntBASIC16.79■□□□□ 0.28
Retrieved 100 of 98,524 protein–RNA pairs in 30.1 ms