Protein–RNA interactions for Protein: Q5TC82

RC3H1, Roquin-1, humanhuman

Known RBP Predictions only

Length 1,133 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
RC3H1Q5TC82 IL12RB1-201ENST00000322153 1902 ntTSL 1 (best) BASIC20.97■□□□□ 0.95
RC3H1Q5TC82 EIF4A3-201ENST00000269349 1734 ntAPPRIS P1 TSL 1 (best) BASIC20.97■□□□□ 0.95
RC3H1Q5TC82 PLEKHM2-202ENST00000375799 4122 ntAPPRIS P2 TSL 1 (best) BASIC20.97■□□□□ 0.95
RC3H1Q5TC82 POMK-203ENST00000614426 1527 ntAPPRIS P1 TSL 4 BASIC20.97■□□□□ 0.95
RC3H1Q5TC82 HSF2-201ENST00000368455 2549 ntAPPRIS P3 TSL 1 (best) BASIC20.97■□□□□ 0.95
RC3H1Q5TC82 RNPS1-203ENST00000397086 2069 ntAPPRIS P1 TSL 1 (best) BASIC20.97■□□□□ 0.95
RC3H1Q5TC82 ZNF395-211ENST00000523202 2068 ntAPPRIS P1 TSL 1 (best) BASIC20.97■□□□□ 0.95
RC3H1Q5TC82 GPT-202ENST00000394955 1885 ntAPPRIS P1 TSL 1 (best) BASIC20.96■□□□□ 0.95
RC3H1Q5TC82 BMP2K-208ENST00000628286 3848 ntAPPRIS ALT2 TSL 5 BASIC20.96■□□□□ 0.95
RC3H1Q5TC82 SLC6A7-203ENST00000524041 2431 ntTSL 5 BASIC20.96■□□□□ 0.95
RC3H1Q5TC82 ST3GAL5-222ENST00000638572 4431 ntAPPRIS P2 TSL 1 (best) BASIC20.96■□□□□ 0.95
RC3H1Q5TC82 PC-204ENST00000524491 1714 ntTSL 2 BASIC20.96■□□□□ 0.95
RC3H1Q5TC82 AC003002.1-202ENST00000596755 1743 ntAPPRIS P1 BASIC20.96■□□□□ 0.95
RC3H1Q5TC82 FOXD4L4-201ENST00000377413 2230 ntAPPRIS P1 BASIC20.96■□□□□ 0.95
RC3H1Q5TC82 ACRV1-201ENST00000315608 1042 ntAPPRIS ALT2 TSL 1 (best) BASIC20.96■□□□□ 0.95
RC3H1Q5TC82 KIAA0907-201ENST00000368319 1155 ntTSL 1 (best) BASIC20.96■□□□□ 0.95
RC3H1Q5TC82 PDSS2-201ENST00000369031 1236 ntTSL 1 (best) BASIC20.96■□□□□ 0.95
RC3H1Q5TC82 NTMT1-201ENST00000372480 852 ntAPPRIS P1 TSL 3 BASIC20.96■□□□□ 0.95
RC3H1Q5TC82 IFITM3-201ENST00000399808 808 ntAPPRIS P2 TSL 1 (best) BASIC20.96■□□□□ 0.95
RC3H1Q5TC82 MEP1AP4-201ENST00000423244 1087 ntBASIC20.96■□□□□ 0.95
RC3H1Q5TC82 HSPB7-207ENST00000487046 844 ntAPPRIS ALT1 TSL 1 (best) BASIC20.96■□□□□ 0.95
RC3H1Q5TC82 SDHAP3-202ENST00000515467 728 ntBASIC20.96■□□□□ 0.95
RC3H1Q5TC82 SERF1B-208ENST00000515588 792 ntTSL 2 BASIC20.96■□□□□ 0.95
RC3H1Q5TC82 RAB43P1-201ENST00000561790 589 ntBASIC20.96■□□□□ 0.95
RC3H1Q5TC82 LINC01975-201ENST00000571890 549 ntTSL 4 BASIC20.96■□□□□ 0.95
RC3H1Q5TC82 NAA38-206ENST00000576384 424 ntTSL 2 BASIC20.96■□□□□ 0.95
RC3H1Q5TC82 PIH1D1-209ENST00000596049 992 ntAPPRIS P1 TSL 5 BASIC20.96■□□□□ 0.95
RC3H1Q5TC82 5S_rRNA.22-201ENST00000614916 106 ntBASIC20.96■□□□□ 0.95
RC3H1Q5TC82 AC007431.3-201ENST00000623221 587 ntBASIC20.96■□□□□ 0.95
RC3H1Q5TC82 RTN4-201ENST00000317610 2333 ntTSL 1 (best) BASIC20.96■□□□□ 0.95
RC3H1Q5TC82 SH2B3-201ENST00000341259 5406 ntAPPRIS P1 TSL 1 (best) BASIC20.96■□□□□ 0.95
RC3H1Q5TC82 SMOX-205ENST00000379460 2230 ntAPPRIS P1 TSL 2 BASIC20.96■□□□□ 0.95
RC3H1Q5TC82 TRPC1-203ENST00000476941 3061 ntAPPRIS ALT2 TSL 1 (best) BASIC20.96■□□□□ 0.95
RC3H1Q5TC82 TRAF2-201ENST00000247668 2264 ntAPPRIS P1 TSL 1 (best) BASIC20.95■□□□□ 0.95
RC3H1Q5TC82 LINC02012-201ENST00000608206 1725 ntBASIC20.95■□□□□ 0.94
RC3H1Q5TC82 GMDS-AS1-201ENST00000456943 2308 ntTSL 2 BASIC20.95■□□□□ 0.94
RC3H1Q5TC82 ZBTB22-207ENST00000418724 2645 ntAPPRIS P1 TSL 1 (best) BASIC20.95■□□□□ 0.94
RC3H1Q5TC82 DMRT2-202ENST00000302441 1495 ntTSL 5 BASIC20.95■□□□□ 0.94
RC3H1Q5TC82 ADRA1A-205ENST00000380582 2089 ntTSL 1 (best) BASIC20.95■□□□□ 0.94
RC3H1Q5TC82 ALOX15B-205ENST00000573359 1809 ntTSL 1 (best) BASIC20.95■□□□□ 0.94
RC3H1Q5TC82 HNF1B-201ENST00000613727 1546 ntTSL 1 (best) BASIC20.95■□□□□ 0.94
RC3H1Q5TC82 RAPGEF5-203ENST00000405243 2800 ntTSL 1 (best) BASIC20.95■□□□□ 0.94
RC3H1Q5TC82 PXK-206ENST00000463280 2825 ntTSL 2 BASIC20.95■□□□□ 0.94
RC3H1Q5TC82 PACS2-205ENST00000547217 2809 ntTSL 5 BASIC20.95■□□□□ 0.94
RC3H1Q5TC82 ELP4-219ENST00000639878 1583 ntTSL 5 BASIC20.95■□□□□ 0.94
RC3H1Q5TC82 RNF114-201ENST00000244061 2503 ntAPPRIS P1 TSL 1 (best) BASIC20.95■□□□□ 0.94
RC3H1Q5TC82 DKKL1-201ENST00000221498 1222 ntAPPRIS P2 TSL 1 (best) BASIC20.95■□□□□ 0.94
RC3H1Q5TC82 LYPLA2-201ENST00000374501 1117 ntTSL 2 BASIC20.95■□□□□ 0.94
RC3H1Q5TC82 TRIM74-202ENST00000395244 1286 ntAPPRIS ALT2 TSL 1 (best) BASIC20.95■□□□□ 0.94
RC3H1Q5TC82 ZFAND2B-203ENST00000409206 1159 ntTSL 2 BASIC20.95■□□□□ 0.94
RC3H1Q5TC82 AL513303.2-201ENST00000413339 536 ntTSL 2 BASIC20.95■□□□□ 0.94
RC3H1Q5TC82 AL162431.1-201ENST00000434447 543 ntTSL 3 BASIC20.95■□□□□ 0.94
RC3H1Q5TC82 ZFAND2B-212ENST00000444522 1199 ntAPPRIS P1 TSL 5 BASIC20.95■□□□□ 0.94
RC3H1Q5TC82 TRIM73-204ENST00000447409 1286 ntAPPRIS ALT2 TSL 1 (best) BASIC20.95■□□□□ 0.94
RC3H1Q5TC82 GGTLC2-202ENST00000448514 678 ntAPPRIS P1 TSL 1 (best) BASIC20.95■□□□□ 0.94
RC3H1Q5TC82 AC022210.1-201ENST00000449856 793 ntBASIC20.95■□□□□ 0.94
RC3H1Q5TC82 RN7SL837P-201ENST00000463010 287 ntBASIC20.95■□□□□ 0.94
RC3H1Q5TC82 SCN4B-204ENST00000529878 566 ntTSL 4 BASIC20.95■□□□□ 0.94
RC3H1Q5TC82 NDRG4-247ENST00000568640 1281 ntTSL 2 BASIC20.95■□□□□ 0.94
RC3H1Q5TC82 AC024267.1-201ENST00000582320 895 ntBASIC20.95■□□□□ 0.94
RC3H1Q5TC82 C19orf70-206ENST00000590389 769 ntTSL 3 BASIC20.95■□□□□ 0.94
RC3H1Q5TC82 KLK15-204ENST00000598239 855 ntAPPRIS P3 TSL 1 (best) BASIC20.95■□□□□ 0.94
RC3H1Q5TC82 AC105277.1-203ENST00000635492 1293 ntTSL 5 BASIC20.95■□□□□ 0.94
RC3H1Q5TC82 PRF1-203ENST00000638674 1080 ntTSL 5 BASIC20.95■□□□□ 0.94
RC3H1Q5TC82 CCDC130-204ENST00000586600 1922 ntAPPRIS P1 TSL 5 BASIC20.95■□□□□ 0.94
RC3H1Q5TC82 DYNC1LI2-201ENST00000258198 4515 ntAPPRIS P1 TSL 1 (best) BASIC20.95■□□□□ 0.94
RC3H1Q5TC82 MARK2-201ENST00000350490 2903 ntAPPRIS ALT2 TSL 1 (best) BASIC20.95■□□□□ 0.94
RC3H1Q5TC82 ZDHHC17-201ENST00000426126 5259 ntAPPRIS P1 TSL 1 (best) BASIC20.95■□□□□ 0.94
RC3H1Q5TC82 TRIM7-204ENST00000393319 2320 ntTSL 1 (best) BASIC20.95■□□□□ 0.94
RC3H1Q5TC82 TBC1D9-201ENST00000442267 5306 ntAPPRIS P1 TSL 1 (best) BASIC20.95■□□□□ 0.94
RC3H1Q5TC82 BVES-202ENST00000336775 1663 ntAPPRIS P1 TSL 1 (best) BASIC20.95■□□□□ 0.94
RC3H1Q5TC82 WDR90-209ENST00000547944 1672 ntTSL 2 BASIC20.95■□□□□ 0.94
RC3H1Q5TC82 CYP11A1-202ENST00000358632 2001 ntTSL 2 BASIC20.95■□□□□ 0.94
RC3H1Q5TC82 MBD1-206ENST00000382948 2434 ntAPPRIS P3 TSL 2 BASIC20.95■□□□□ 0.94
RC3H1Q5TC82 AC009163.2-201ENST00000460606 2125 ntAPPRIS P1 TSL 1 (best) BASIC20.95■□□□□ 0.94
RC3H1Q5TC82 CFL1-203ENST00000525451 1878 ntAPPRIS P1 TSL 2 BASIC20.94■□□□□ 0.94
RC3H1Q5TC82 PTHLH-205ENST00000535992 1891 ntAPPRIS P3 TSL 1 (best) BASIC20.94■□□□□ 0.94
RC3H1Q5TC82 NFIC-201ENST00000341919 1573 ntTSL 1 (best) BASIC20.94■□□□□ 0.94
RC3H1Q5TC82 CHRFAM7A-202ENST00000397827 2794 ntTSL 5 BASIC20.94■□□□□ 0.94
RC3H1Q5TC82 ICAM3-205ENST00000589261 2024 ntTSL 1 (best) BASIC20.94■□□□□ 0.94
RC3H1Q5TC82 FOXD4L6-201ENST00000622588 2034 ntAPPRIS P1 BASIC20.94■□□□□ 0.94
RC3H1Q5TC82 OLFM2-203ENST00000590841 1665 ntTSL 2 BASIC20.94■□□□□ 0.94
RC3H1Q5TC82 NMU-201ENST00000264218 816 ntAPPRIS P1 TSL 1 (best) BASIC20.94■□□□□ 0.94
RC3H1Q5TC82 NDUFS8-201ENST00000313468 791 ntAPPRIS P1 TSL 1 (best) BASIC20.94■□□□□ 0.94
RC3H1Q5TC82 SZT2-AS1-201ENST00000396885 699 ntTSL 3 BASIC20.94■□□□□ 0.94
RC3H1Q5TC82 PRSS48-202ENST00000455694 989 ntAPPRIS P1 TSL 1 (best) BASIC20.94■□□□□ 0.94
RC3H1Q5TC82 AC092910.3-202ENST00000469070 982 ntTSL 3 BASIC20.94■□□□□ 0.94
RC3H1Q5TC82 PTPRG-AS1-205ENST00000475371 733 ntTSL 3 BASIC20.94■□□□□ 0.94
RC3H1Q5TC82 LINC02356-202ENST00000552663 314 ntTSL 3 BASIC20.94■□□□□ 0.94
RC3H1Q5TC82 GABARAPL2-202ENST00000563744 791 ntTSL 1 (best) BASIC20.94■□□□□ 0.94
RC3H1Q5TC82 AC061975.2-201ENST00000581722 295 ntBASIC20.94■□□□□ 0.94
RC3H1Q5TC82 SERPINE2-201ENST00000258405 2195 ntAPPRIS P3 TSL 1 (best) BASIC20.94■□□□□ 0.94
RC3H1Q5TC82 QKI-201ENST00000275262 6964 ntTSL 1 (best) BASIC20.94■□□□□ 0.94
RC3H1Q5TC82 KLK8-211ENST00000600767 1324 ntAPPRIS P1 TSL 2 BASIC20.94■□□□□ 0.94
RC3H1Q5TC82 HFE2-201ENST00000336751 2234 ntAPPRIS P1 TSL 2 BASIC20.94■□□□□ 0.94
RC3H1Q5TC82 CPSF3-201ENST00000238112 2345 ntAPPRIS P1 TSL 1 (best) BASIC20.94■□□□□ 0.94
RC3H1Q5TC82 TBRG4-202ENST00000361278 1917 ntTSL 1 (best) BASIC20.94■□□□□ 0.94
RC3H1Q5TC82 A4GALT-202ENST00000381278 1935 ntAPPRIS P1 TSL 5 BASIC20.94■□□□□ 0.94
RC3H1Q5TC82 AL590627.1-201ENST00000626603 1910 ntTSL 2 BASIC20.94■□□□□ 0.94
RC3H1Q5TC82 HDHD3-202ENST00000374180 1497 ntAPPRIS P1 TSL 1 (best) BASIC20.94■□□□□ 0.94
Retrieved 100 of 98,524 protein–RNA pairs in 44.1 ms