Protein–RNA interactions for Protein: P56880

CLDN20, Claudin-20, humanhuman

Predictions only

Length 219 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CLDN20P56880 PCDHGA11-202ENST00000518882 2263 ntAPPRIS ALT2 TSL 1 (best) BASIC15.52■□□□□ 0.07
CLDN20P56880 GRAMD1A-202ENST00000411896 2523 ntAPPRIS ALT2 TSL 2 BASIC15.52■□□□□ 0.07
CLDN20P56880 ZMYND11-208ENST00000397962 2150 ntAPPRIS P1 TSL 1 (best) BASIC15.52■□□□□ 0.07
CLDN20P56880 FAM86DP-207ENST00000497543 2152 ntTSL 2 BASIC15.52■□□□□ 0.07
CLDN20P56880 CES1-202ENST00000361503 1835 ntAPPRIS ALT1 TSL 1 (best) BASIC15.52■□□□□ 0.07
CLDN20P56880 PDE4C-201ENST00000262805 2472 ntAPPRIS ALT2 TSL 1 (best) BASIC15.52■□□□□ 0.07
CLDN20P56880 GCSH-209ENST00000639689 2412 ntTSL 5 BASIC15.52■□□□□ 0.07
CLDN20P56880 TBXAS1-202ENST00000411653 1792 ntTSL 1 (best) BASIC15.52■□□□□ 0.07
CLDN20P56880 WAC-203ENST00000354911 3042 ntAPPRIS P1 TSL 1 (best) BASIC15.52■□□□□ 0.07
CLDN20P56880 TICAM2-201ENST00000427199 3049 ntAPPRIS P1 TSL 1 (best) BASIC15.52■□□□□ 0.07
CLDN20P56880 AC104109.2-201ENST00000602919 1418 ntBASIC15.51■□□□□ 0.07
CLDN20P56880 AL021453.1-201ENST00000333487 2989 ntTSL 2 BASIC15.51■□□□□ 0.07
CLDN20P56880 ATP6V0E2-AS1-201ENST00000461019 2973 ntTSL 1 (best) BASIC15.51■□□□□ 0.07
CLDN20P56880 SEMA4B-202ENST00000411539 3807 ntAPPRIS P1 TSL 1 (best) BASIC15.51■□□□□ 0.07
CLDN20P56880 FOXP3-206ENST00000557224 1371 ntTSL 2 BASIC15.51■□□□□ 0.07
CLDN20P56880 CA12-203ENST00000422263 2556 ntTSL 2 BASIC15.51■□□□□ 0.07
CLDN20P56880 JMJD4-206ENST00000615711 2591 ntTSL 1 (best) BASIC15.51■□□□□ 0.07
CLDN20P56880 SSH3-201ENST00000308127 2871 ntAPPRIS P1 TSL 1 (best) BASIC15.51■□□□□ 0.07
CLDN20P56880 PIAS4-201ENST00000262971 3159 ntAPPRIS P1 TSL 1 (best) BASIC15.51■□□□□ 0.07
CLDN20P56880 OSBP2-211ENST00000446658 2836 ntAPPRIS ALT2 TSL 1 (best) BASIC15.51■□□□□ 0.07
CLDN20P56880 ZSCAN2-214ENST00000546148 2242 ntAPPRIS P2 TSL 2 BASIC15.51■□□□□ 0.07
CLDN20P56880 SLC38A11-202ENST00000409058 1647 ntAPPRIS ALT2 TSL 5 BASIC15.51■□□□□ 0.07
CLDN20P56880 WTAP-205ENST00000614346 1623 ntTSL 2 BASIC15.51■□□□□ 0.07
CLDN20P56880 FOXP3-201ENST00000376197 1326 ntTSL 2 BASIC15.51■□□□□ 0.07
CLDN20P56880 AL590787.1-201ENST00000568856 1315 ntBASIC15.51■□□□□ 0.07
CLDN20P56880 SLA2-202ENST00000360672 2171 ntTSL 5 BASIC15.51■□□□□ 0.07
CLDN20P56880 FAM178B-204ENST00000490605 2710 ntAPPRIS ALT2 TSL 5 BASIC15.51■□□□□ 0.07
CLDN20P56880 ADIPOR1-202ENST00000367254 1116 ntTSL 1 (best) BASIC15.51■□□□□ 0.07
CLDN20P56880 BAG1-202ENST00000379704 1128 ntAPPRIS ALT2 TSL 1 (best) BASIC15.51■□□□□ 0.07
CLDN20P56880 PDK1-203ENST00000410055 2990 ntAPPRIS P3 TSL 1 (best) BASIC15.51■□□□□ 0.07
CLDN20P56880 GLI4-207ENST00000521682 1082 ntTSL 3 BASIC15.51■□□□□ 0.07
CLDN20P56880 TUBB3-205ENST00000554336 903 ntTSL 3 BASIC15.51■□□□□ 0.07
CLDN20P56880 CDCP1-201ENST00000296129 6006 ntAPPRIS P3 TSL 1 (best) BASIC15.51■□□□□ 0.07
CLDN20P56880 LINC00094-205ENST00000603928 5722 ntAPPRIS ALT2 TSL 2 BASIC15.51■□□□□ 0.07
CLDN20P56880 SYBU-231ENST00000533065 2645 ntAPPRIS ALT2 TSL 2 BASIC15.51■□□□□ 0.07
CLDN20P56880 SMO-201ENST00000249373 3738 ntAPPRIS P1 TSL 1 (best) BASIC15.51■□□□□ 0.07
CLDN20P56880 BDP1-202ENST00000380675 2861 ntAPPRIS ALT2 TSL 5 BASIC15.51■□□□□ 0.07
CLDN20P56880 NKAIN1-201ENST00000373736 2589 ntAPPRIS P1 TSL 2 BASIC15.51■□□□□ 0.07
CLDN20P56880 STK32C-204ENST00000368622 2010 ntTSL 1 (best) BASIC15.51■□□□□ 0.07
CLDN20P56880 GPR89P-201ENST00000407924 1495 ntBASIC15.51■□□□□ 0.07
CLDN20P56880 TFAP2D-201ENST00000008391 1711 ntAPPRIS P1 TSL 1 (best) BASIC15.51■□□□□ 0.07
CLDN20P56880 UBE2R2-201ENST00000263228 4075 ntAPPRIS P1 TSL 1 (best) BASIC15.51■□□□□ 0.07
CLDN20P56880 OSGIN1-202ENST00000361711 2230 ntAPPRIS P1 TSL 2 BASIC15.51■□□□□ 0.07
CLDN20P56880 AC026412.1-202ENST00000512335 2231 ntTSL 1 (best) BASIC15.51■□□□□ 0.07
CLDN20P56880 OSBPL9-222ENST00000531828 2210 ntTSL 5 BASIC15.51■□□□□ 0.07
CLDN20P56880 PCIF1-201ENST00000372409 2747 ntAPPRIS P1 TSL 1 (best) BASIC15.51■□□□□ 0.07
CLDN20P56880 GPR158-AS1-201ENST00000449643 2433 ntTSL 2 BASIC15.51■□□□□ 0.07
CLDN20P56880 AC011473.4-202ENST00000250366 1602 ntAPPRIS P5 TSL 2 BASIC15.5■□□□□ 0.07
CLDN20P56880 SIL1-201ENST00000265195 1895 ntAPPRIS P1 TSL 5 BASIC15.5■□□□□ 0.07
CLDN20P56880 ATP6V0E2-202ENST00000425642 1649 ntAPPRIS P1 TSL 1 (best) BASIC15.5■□□□□ 0.07
CLDN20P56880 HDAC11-214ENST00000446613 2875 ntTSL 5 BASIC15.5■□□□□ 0.07
CLDN20P56880 KRT85-202ENST00000544265 1387 ntTSL 2 BASIC15.5■□□□□ 0.07
CLDN20P56880 MREG-205ENST00000620139 2618 ntAPPRIS P1 TSL 2 BASIC15.5■□□□□ 0.07
CLDN20P56880 GOSR1-201ENST00000225724 6039 ntAPPRIS P3 TSL 1 (best) BASIC15.5■□□□□ 0.07
CLDN20P56880 KCNA5-201ENST00000252321 2800 ntAPPRIS P1 BASIC15.5■□□□□ 0.07
CLDN20P56880 LRP11-201ENST00000239367 3260 ntAPPRIS P1 TSL 1 (best) BASIC15.5■□□□□ 0.07
CLDN20P56880 SSPN-201ENST00000242729 2788 ntAPPRIS P1 TSL 1 (best) BASIC15.5■□□□□ 0.07
CLDN20P56880 SURF4-209ENST00000618229 3200 ntTSL 2 BASIC15.5■□□□□ 0.07
CLDN20P56880 TMPRSS5-207ENST00000540540 2001 ntTSL 2 BASIC15.5■□□□□ 0.07
CLDN20P56880 CRELD1-206ENST00000452070 1778 ntAPPRIS P1 TSL 2 BASIC15.5■□□□□ 0.07
CLDN20P56880 DDX19B-207ENST00000563206 1765 ntTSL 5 BASIC15.5■□□□□ 0.07
CLDN20P56880 ZDHHC8-202ENST00000334554 5046 ntAPPRIS P1 TSL 1 (best) BASIC15.5■□□□□ 0.07
CLDN20P56880 GTDC1-219ENST00000542155 2677 ntAPPRIS P1 TSL 2 BASIC15.5■□□□□ 0.07
CLDN20P56880 TBC1D4-202ENST00000377636 6364 ntAPPRIS P3 TSL 2 BASIC15.5■□□□□ 0.07
CLDN20P56880 PDHA1-203ENST00000379805 734 ntTSL 2 BASIC15.5■□□□□ 0.07
CLDN20P56880 OTOS-202ENST00000391989 645 ntAPPRIS P1 TSL 3 BASIC15.5■□□□□ 0.07
CLDN20P56880 PTCHD3P3-201ENST00000403073 906 ntBASIC15.5■□□□□ 0.07
CLDN20P56880 AC080075.1-201ENST00000469747 427 ntTSL 2 BASIC15.5■□□□□ 0.07
CLDN20P56880 RPS15P9-201ENST00000494093 319 ntBASIC15.5■□□□□ 0.07
CLDN20P56880 AC139887.2-202ENST00000507446 534 ntTSL 4 BASIC15.5■□□□□ 0.07
CLDN20P56880 AMACR-208ENST00000512079 858 ntTSL 1 (best) BASIC15.5■□□□□ 0.07
CLDN20P56880 AC055811.1-201ENST00000584203 1231 ntTSL 5 BASIC15.5■□□□□ 0.07
CLDN20P56880 PGM5P2-202ENST00000637225 1043 ntBASIC15.5■□□□□ 0.07
CLDN20P56880 MAP4K3-202ENST00000341681 4271 ntTSL 1 (best) BASIC15.5■□□□□ 0.07
CLDN20P56880 APBA2-207ENST00000558402 4031 ntAPPRIS P1 TSL 5 BASIC15.5■□□□□ 0.07
CLDN20P56880 SMCHD1-201ENST00000320876 8821 ntAPPRIS P1 TSL 5 BASIC15.5■□□□□ 0.07
CLDN20P56880 FAM83A-202ENST00000518448 5393 ntAPPRIS P1 TSL 1 (best) BASIC15.5■□□□□ 0.07
CLDN20P56880 EPN1-203ENST00000411543 2621 ntTSL 1 (best) BASIC15.5■□□□□ 0.07
CLDN20P56880 AC062028.1-203ENST00000447433 1472 ntTSL 1 (best) BASIC15.5■□□□□ 0.07
CLDN20P56880 C11orf49-204ENST00000395460 1916 ntTSL 1 (best) BASIC15.5■□□□□ 0.07
CLDN20P56880 PACS2-205ENST00000547217 2809 ntTSL 5 BASIC15.5■□□□□ 0.07
CLDN20P56880 MALT1-202ENST00000348428 9368 ntAPPRIS P4 TSL 1 (best) BASIC15.5■□□□□ 0.07
CLDN20P56880 SNX16-201ENST00000345957 1853 ntAPPRIS P1 TSL 1 (best) BASIC15.5■□□□□ 0.07
CLDN20P56880 IL2RG-202ENST00000374188 1432 ntTSL 5 BASIC15.5■□□□□ 0.07
CLDN20P56880 DFFA-201ENST00000377036 1403 ntTSL 1 (best) BASIC15.5■□□□□ 0.07
CLDN20P56880 BANP-204ENST00000393208 2283 ntTSL 2 BASIC15.5■□□□□ 0.07
CLDN20P56880 ADGRB2-206ENST00000398556 4879 ntAPPRIS ALT2 TSL 5 BASIC15.5■□□□□ 0.07
CLDN20P56880 VOPP1-207ENST00000428648 2866 ntTSL 2 BASIC15.5■□□□□ 0.07
CLDN20P56880 ACSF3-204ENST00000406948 2247 ntAPPRIS P1 TSL 2 BASIC15.49■□□□□ 0.07
CLDN20P56880 NDRG4-202ENST00000356752 1375 ntTSL 2 BASIC15.49■□□□□ 0.07
CLDN20P56880 HFE2-204ENST00000475797 1381 ntTSL 2 BASIC15.49■□□□□ 0.07
CLDN20P56880 THAP3-201ENST00000054650 1366 ntAPPRIS ALT2 TSL 1 (best) BASIC15.49■□□□□ 0.07
CLDN20P56880 OPRK1-205ENST00000612786 5196 ntTSL 1 (best) BASIC15.49■□□□□ 0.07
CLDN20P56880 EPB41-205ENST00000373797 2402 ntTSL 1 (best) BASIC15.49■□□□□ 0.07
CLDN20P56880 RRAGD-202ENST00000369415 4900 ntAPPRIS P1 TSL 1 (best) BASIC15.49■□□□□ 0.07
CLDN20P56880 POC1A-203ENST00000474012 1760 ntAPPRIS ALT2 TSL 2 BASIC15.49■□□□□ 0.07
CLDN20P56880 SLC35E2B-204ENST00000614300 2156 ntTSL 1 (best) BASIC15.49■□□□□ 0.07
CLDN20P56880 PHGDH-223ENST00000641597 2585 ntAPPRIS P1 BASIC15.49■□□□□ 0.07
CLDN20P56880 CDC73-201ENST00000367435 4969 ntAPPRIS P1 TSL 1 (best) BASIC15.49■□□□□ 0.07
CLDN20P56880 REEP1-208ENST00000538924 1702 ntTSL 5 BASIC15.49■□□□□ 0.07
Retrieved 100 of 98,524 protein–RNA pairs in 30.1 ms