Protein–RNA interactions for Protein: P52701

MSH6, DNA mismatch repair protein Msh6, humanhuman

Predictions only

Length 1,360 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
MSH6P52701 OSGIN2-203ENST00000520659 801 ntTSL 2 BASIC23.06■■□□□ 1.28
MSH6P52701 FGFR1OP2-206ENST00000546072 956 ntTSL 1 (best) BASIC23.06■■□□□ 1.28
MSH6P52701 QPRT-203ENST00000562473 579 ntTSL 3 BASIC23.06■■□□□ 1.28
MSH6P52701 RPS24-214ENST00000613865 538 ntTSL 5 BASIC23.06■■□□□ 1.28
MSH6P52701 PDLIM7-203ENST00000359895 1567 ntAPPRIS ALT2 TSL 1 (best) BASIC23.06■■□□□ 1.28
MSH6P52701 USP36-203ENST00000542802 6063 ntAPPRIS P2 TSL 1 (best) BASIC23.06■■□□□ 1.28
MSH6P52701 CACNA1B-201ENST00000277549 7158 ntAPPRIS ALT2 TSL 1 (best) BASIC23.06■■□□□ 1.28
MSH6P52701 CACNA1B-202ENST00000277551 7158 ntAPPRIS ALT2 TSL 5 BASIC23.06■■□□□ 1.28
MSH6P52701 CDCA7L-203ENST00000406877 3066 ntAPPRIS P3 TSL 1 (best) BASIC23.06■■□□□ 1.28
MSH6P52701 CACNA1H-202ENST00000358590 8069 ntAPPRIS ALT2 TSL 5 BASIC23.06■■□□□ 1.28
MSH6P52701 PTGES3-202ENST00000414274 1547 ntTSL 2 BASIC23.06■■□□□ 1.28
MSH6P52701 HM13-202ENST00000340852 1606 ntAPPRIS P1 TSL 1 (best) BASIC23.06■■□□□ 1.28
MSH6P52701 MUC1-228ENST00000620103 1811 ntAPPRIS ALT2 TSL 5 BASIC23.06■■□□□ 1.28
MSH6P52701 BIRC8-201ENST00000426466 2026 ntAPPRIS P1 BASIC23.06■■□□□ 1.28
MSH6P52701 NR2E3-204ENST00000621736 2032 ntTSL 2 BASIC23.06■■□□□ 1.28
MSH6P52701 CECR2-202ENST00000342247 6178 ntAPPRIS ALT2 TSL 5 BASIC23.06■■□□□ 1.28
MSH6P52701 LARGE2-202ENST00000401752 2516 ntAPPRIS P3 TSL 1 (best) BASIC23.06■■□□□ 1.28
MSH6P52701 GATA2-202ENST00000430265 2525 ntTSL 1 (best) BASIC23.06■■□□□ 1.28
MSH6P52701 NPR3-204ENST00000434067 2715 ntTSL 5 BASIC23.06■■□□□ 1.28
MSH6P52701 NRG2-202ENST00000289422 2923 ntTSL 5 BASIC23.06■■□□□ 1.28
MSH6P52701 EIF4E3-201ENST00000295612 2764 ntTSL 1 (best) BASIC23.05■■□□□ 1.28
MSH6P52701 EGFEM1P-202ENST00000431685 1563 ntBASIC23.05■■□□□ 1.28
MSH6P52701 NBL1-201ENST00000289749 731 ntAPPRIS ALT2 TSL 2 BASIC23.05■■□□□ 1.28
MSH6P52701 STX1A-203ENST00000395155 783 ntTSL 2 BASIC23.05■■□□□ 1.28
MSH6P52701 LINC01939-201ENST00000445279 694 ntTSL 5 BASIC23.05■■□□□ 1.28
MSH6P52701 AL355994.2-201ENST00000447882 704 ntBASIC23.05■■□□□ 1.28
MSH6P52701 RCAN1-212ENST00000492600 935 ntTSL 2 BASIC23.05■■□□□ 1.28
MSH6P52701 PARP8-206ENST00000503665 572 ntTSL 4 BASIC23.05■■□□□ 1.28
MSH6P52701 AC008808.1-201ENST00000508923 432 ntTSL 3 BASIC23.05■■□□□ 1.28
MSH6P52701 AC000032.1-201ENST00000562538 491 ntTSL 2 BASIC23.05■■□□□ 1.28
MSH6P52701 AC244093.1-201ENST00000610837 814 ntBASIC23.05■■□□□ 1.28
MSH6P52701 NFIX-202ENST00000360105 5459 ntTSL 5 BASIC23.05■■□□□ 1.28
MSH6P52701 PCSK5-202ENST00000376767 2845 ntTSL 2 BASIC23.05■■□□□ 1.28
MSH6P52701 DNM1-211ENST00000627061 2724 ntTSL 5 BASIC23.05■■□□□ 1.28
MSH6P52701 RNF146-201ENST00000309649 2624 ntAPPRIS P3 TSL 4 BASIC23.05■■□□□ 1.28
MSH6P52701 SMIM10L2A-201ENST00000417443 5230 ntAPPRIS P1 TSL 1 (best) BASIC23.05■■□□□ 1.28
MSH6P52701 TMEM120A-201ENST00000417509 1444 ntTSL 2 BASIC23.05■■□□□ 1.28
MSH6P52701 HYAL3-205ENST00000450982 1402 ntTSL 1 (best) BASIC23.05■■□□□ 1.28
MSH6P52701 FNBP1-201ENST00000355681 1977 ntTSL 2 BASIC23.05■■□□□ 1.28
MSH6P52701 BEGAIN-202ENST00000443071 2744 ntTSL 1 (best) BASIC23.05■■□□□ 1.28
MSH6P52701 TH-205ENST00000381175 1898 ntTSL 1 (best) BASIC23.05■■□□□ 1.28
MSH6P52701 SSUH2-202ENST00000341795 1799 ntAPPRIS P3 TSL 1 (best) BASIC23.05■■□□□ 1.28
MSH6P52701 KRT8-217ENST00000619952 2437 ntTSL 2 BASIC23.05■■□□□ 1.28
MSH6P52701 DNAJC7-201ENST00000316603 1468 ntTSL 1 (best) BASIC23.04■■□□□ 1.28
MSH6P52701 UBTF-202ENST00000343638 4684 ntTSL 1 (best) BASIC23.04■■□□□ 1.28
MSH6P52701 POLR2I-201ENST00000221859 913 ntAPPRIS P1 TSL 1 (best) BASIC23.04■■□□□ 1.28
MSH6P52701 NMU-201ENST00000264218 816 ntAPPRIS P1 TSL 1 (best) BASIC23.04■■□□□ 1.28
MSH6P52701 GBGT1-202ENST00000372038 847 ntTSL 3 BASIC23.04■■□□□ 1.28
MSH6P52701 WNT7B-203ENST00000410058 714 ntTSL 3 BASIC23.04■■□□□ 1.28
MSH6P52701 PLA2G16-203ENST00000415826 1099 ntAPPRIS P1 TSL 2 BASIC23.04■■□□□ 1.28
MSH6P52701 AP001007.1-201ENST00000526796 645 ntTSL 2 BASIC23.04■■□□□ 1.28
MSH6P52701 AC233702.7-201ENST00000536958 924 ntTSL 5 BASIC23.04■■□□□ 1.28
MSH6P52701 C12orf49-204ENST00000548356 923 ntTSL 2 BASIC23.04■■□□□ 1.28
MSH6P52701 NDUFB1-207ENST00000617122 417 ntTSL 1 (best) BASIC23.04■■□□□ 1.28
MSH6P52701 RETN-203ENST00000629642 400 ntTSL 5 BASIC23.04■■□□□ 1.28
MSH6P52701 AC105277.1-203ENST00000635492 1293 ntTSL 5 BASIC23.04■■□□□ 1.28
MSH6P52701 PLA2G16-206ENST00000639271 957 ntTSL 5 BASIC23.04■■□□□ 1.28
MSH6P52701 SLC47A2-201ENST00000325411 2258 ntAPPRIS P3 TSL 1 (best) BASIC23.04■■□□□ 1.28
MSH6P52701 LINC01185-202ENST00000452343 1705 ntTSL 2 BASIC23.04■■□□□ 1.28
MSH6P52701 IRF3-217ENST00000597198 1741 ntAPPRIS P1 TSL 2 BASIC23.04■■□□□ 1.28
MSH6P52701 PITPNM2-AS1-201ENST00000506255 2191 ntTSL 2 BASIC23.04■■□□□ 1.28
MSH6P52701 LUC7L-202ENST00000337351 2097 ntTSL 1 (best) BASIC23.04■■□□□ 1.28
MSH6P52701 BICD1-207ENST00000551848 1962 ntBASIC23.04■■□□□ 1.28
MSH6P52701 CHRND-201ENST00000258385 2112 ntAPPRIS P1 TSL 1 (best) BASIC23.04■■□□□ 1.28
MSH6P52701 CTSW-201ENST00000307886 1300 ntAPPRIS P1 TSL 1 (best) BASIC23.04■■□□□ 1.28
MSH6P52701 TUBB1P2-201ENST00000422712 1306 ntBASIC23.04■■□□□ 1.28
MSH6P52701 TUBB1P1-201ENST00000503144 1300 ntBASIC23.04■■□□□ 1.28
MSH6P52701 CCDC90B-202ENST00000455220 1550 ntTSL 1 (best) BASIC23.04■■□□□ 1.28
MSH6P52701 BCRP2-201ENST00000398241 1842 ntTSL 2 BASIC23.04■■□□□ 1.28
MSH6P52701 GRM6-201ENST00000231188 6143 ntAPPRIS P1 TSL 2 BASIC23.04■■□□□ 1.28
MSH6P52701 UBL7-209ENST00000567435 1720 ntAPPRIS P1 TSL 1 (best) BASIC23.04■■□□□ 1.28
MSH6P52701 TMCO1-207ENST00000580248 1735 ntTSL 2 BASIC23.04■■□□□ 1.28
MSH6P52701 EDC4-201ENST00000358933 4800 ntAPPRIS P1 TSL 1 (best) BASIC23.04■■□□□ 1.28
MSH6P52701 NTRK1-201ENST00000358660 2492 ntAPPRIS ALT2 TSL 2 BASIC23.03■■□□□ 1.28
MSH6P52701 AL669831.5-201ENST00000434264 844 ntTSL 5 BASIC23.03■■□□□ 1.28
MSH6P52701 AC099754.1-201ENST00000435884 454 ntTSL 3 BASIC23.03■■□□□ 1.28
MSH6P52701 SYNPR-202ENST00000450542 1004 ntTSL 1 (best) BASIC23.03■■□□□ 1.28
MSH6P52701 AL589987.1-201ENST00000453380 819 ntBASIC23.03■■□□□ 1.28
MSH6P52701 AC099548.2-209ENST00000480264 625 ntBASIC23.03■■□□□ 1.28
MSH6P52701 TPI1-206ENST00000488464 791 ntTSL 5 BASIC23.03■■□□□ 1.28
MSH6P52701 USP32P1-208ENST00000506594 1164 ntBASIC23.03■■□□□ 1.28
MSH6P52701 AC103810.3-201ENST00000583567 96 ntBASIC23.03■■□□□ 1.28
MSH6P52701 AC090164.4-201ENST00000632451 313 ntTSL 5 BASIC23.03■■□□□ 1.28
MSH6P52701 SSB-202ENST00000409333 1782 ntAPPRIS P1 TSL 1 (best) BASIC23.03■■□□□ 1.28
MSH6P52701 AC002310.1-201ENST00000457283 1445 ntTSL 2 BASIC23.03■■□□□ 1.28
MSH6P52701 GGNBP2-210ENST00000611219 2315 ntTSL 2 BASIC23.03■■□□□ 1.28
MSH6P52701 TRIM50-202ENST00000453152 1599 ntAPPRIS P1 TSL 2 BASIC23.03■■□□□ 1.28
MSH6P52701 NFIC-210ENST00000590282 1558 ntTSL 2 BASIC23.03■■□□□ 1.28
MSH6P52701 HACD3-202ENST00000442729 1332 ntTSL 2 BASIC23.03■■□□□ 1.28
MSH6P52701 BEND4-203ENST00000611697 1348 ntTSL 2 BASIC23.03■■□□□ 1.28
MSH6P52701 TMEM5-205ENST00000537373 1966 ntTSL 1 (best) BASIC23.03■■□□□ 1.28
MSH6P52701 PLA2G4C-222ENST00000599921 1984 ntAPPRIS P3 TSL 1 (best) BASIC23.03■■□□□ 1.28
MSH6P52701 GALNT9-202ENST00000397325 1727 ntTSL 1 (best) BASIC23.03■■□□□ 1.28
MSH6P52701 WBP2-219ENST00000626827 1867 ntTSL 5 BASIC23.03■■□□□ 1.28
MSH6P52701 COMP-202ENST00000425807 2292 ntTSL 2 BASIC23.03■■□□□ 1.28
MSH6P52701 ACSS3-201ENST00000261206 2666 ntAPPRIS ALT1 TSL 1 (best) BASIC23.03■■□□□ 1.28
MSH6P52701 CAPN5-205ENST00000529629 2333 ntAPPRIS P1 TSL 1 (best) BASIC23.03■■□□□ 1.28
MSH6P52701 ZNF668-208ENST00000538906 2865 ntAPPRIS P1 TSL 2 BASIC23.02■■□□□ 1.28
MSH6P52701 HOXA5-201ENST00000222726 1657 ntAPPRIS P1 TSL 1 (best) BASIC23.02■■□□□ 1.28
MSH6P52701 HLA-DQB1-201ENST00000374943 1656 ntBASIC23.02■■□□□ 1.28
Retrieved 100 of 98,524 protein–RNA pairs in 25.4 ms