Protein–RNA interactions for Protein: P43699

NKX2-1, Homeobox protein Nkx-2.1, humanhuman

Predicted RBP Predictions only

Length 371 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
NKX2-1P43699 SYNRG-223ENST00000616179 4050 ntAPPRIS ALT2 TSL 5 BASIC13.87□□□□□ -0.19
NKX2-1P43699 ASB16-AS1-201ENST00000585457 2213 ntTSL 2 BASIC13.87□□□□□ -0.19
NKX2-1P43699 DCAF11-217ENST00000559115 2711 ntAPPRIS P1 TSL 1 (best) BASIC13.87□□□□□ -0.19
NKX2-1P43699 TUBGCP2-203ENST00000368563 4218 ntAPPRIS P1 TSL 1 (best) BASIC13.87□□□□□ -0.19
NKX2-1P43699 MAU2-201ENST00000262815 4994 ntAPPRIS P1 TSL 1 (best) BASIC13.87□□□□□ -0.19
NKX2-1P43699 NOTCH2NL-201ENST00000362074 1874 ntAPPRIS P2 TSL 1 (best) BASIC13.87□□□□□ -0.19
NKX2-1P43699 SPAG1-202ENST00000388798 3852 ntAPPRIS P1 TSL 1 (best) BASIC13.87□□□□□ -0.19
NKX2-1P43699 TRIM7-203ENST00000393315 2851 ntTSL 1 (best) BASIC13.87□□□□□ -0.19
NKX2-1P43699 ZNF418-208ENST00000599852 2501 ntTSL 2 BASIC13.87□□□□□ -0.19
NKX2-1P43699 MYCBPAP-201ENST00000323776 3186 ntAPPRIS P2 TSL 1 (best) BASIC13.87□□□□□ -0.19
NKX2-1P43699 ATP2A2-204ENST00000539276 4094 ntAPPRIS P4 TSL 1 (best) BASIC13.87□□□□□ -0.19
NKX2-1P43699 CHCHD6-201ENST00000290913 1006 ntAPPRIS P2 TSL 1 (best) BASIC13.87□□□□□ -0.19
NKX2-1P43699 GSTO2-201ENST00000338595 1179 ntAPPRIS P1 TSL 1 (best) BASIC13.87□□□□□ -0.19
NKX2-1P43699 SPDYE2-201ENST00000341656 1219 ntAPPRIS ALT2 TSL 1 (best) BASIC13.87□□□□□ -0.19
NKX2-1P43699 TSTD1-202ENST00000368023 574 ntAPPRIS ALT2 TSL 2 BASIC13.87□□□□□ -0.19
NKX2-1P43699 TBC1D7-205ENST00000379307 1084 ntTSL 1 (best) BASIC13.87□□□□□ -0.19
NKX2-1P43699 RPS9-203ENST00000391752 772 ntAPPRIS P1 TSL 2 BASIC13.87□□□□□ -0.19
NKX2-1P43699 MRPS24-203ENST00000418740 743 ntTSL 2 BASIC13.87□□□□□ -0.19
NKX2-1P43699 SPDYE2B-202ENST00000455020 1219 ntAPPRIS ALT2 TSL 1 (best) BASIC13.87□□□□□ -0.19
NKX2-1P43699 AC079031.1-201ENST00000542627 1035 ntTSL 3 BASIC13.87□□□□□ -0.19
NKX2-1P43699 AL132780.2-201ENST00000557615 1021 ntTSL 3 BASIC13.87□□□□□ -0.19
NKX2-1P43699 PRR29-205ENST00000579184 1052 ntAPPRIS ALT2 TSL 2 BASIC13.87□□□□□ -0.19
NKX2-1P43699 CIRBP-235ENST00000591935 746 ntAPPRIS ALT1 TSL 3 BASIC13.87□□□□□ -0.19
NKX2-1P43699 SLF2-205ENST00000609386 891 ntAPPRIS ALT2 BASIC13.87□□□□□ -0.19
NKX2-1P43699 CCDC28A-203ENST00000617445 1240 ntAPPRIS P1 TSL 1 (best) BASIC13.87□□□□□ -0.19
NKX2-1P43699 SPINK2-206ENST00000618802 608 ntTSL 3 BASIC13.87□□□□□ -0.19
NKX2-1P43699 LITAF-220ENST00000620789 692 ntTSL 5 BASIC13.87□□□□□ -0.19
NKX2-1P43699 ATG4B-226ENST00000625810 370 ntTSL 4 BASIC13.87□□□□□ -0.19
NKX2-1P43699 CROCCP2-205ENST00000639481 1296 ntTSL 1 (best) BASIC13.87□□□□□ -0.19
NKX2-1P43699 AC066615.1-201ENST00000640911 628 ntBASIC13.87□□□□□ -0.19
NKX2-1P43699 PDE1C-202ENST00000396182 2420 ntTSL 1 (best) BASIC13.87□□□□□ -0.19
NKX2-1P43699 DKC1-213ENST00000620277 3079 ntAPPRIS ALT2 TSL 1 (best) BASIC13.87□□□□□ -0.19
NKX2-1P43699 DCTN1-203ENST00000409240 4365 ntAPPRIS ALT2 TSL 1 (best) BASIC13.87□□□□□ -0.19
NKX2-1P43699 ZNF385C-205ENST00000618554 2596 ntTSL 5 BASIC13.87□□□□□ -0.19
NKX2-1P43699 PXN-207ENST00000536957 4112 ntAPPRIS ALT2 TSL 2 BASIC13.87□□□□□ -0.19
NKX2-1P43699 TVP23B-201ENST00000307767 2064 ntAPPRIS P2 TSL 1 (best) BASIC13.87□□□□□ -0.19
NKX2-1P43699 AC004233.2-201ENST00000573315 2062 ntAPPRIS P1 TSL 5 BASIC13.87□□□□□ -0.19
NKX2-1P43699 ECE1-204ENST00000415912 5099 ntAPPRIS ALT1 TSL 1 (best) BASIC13.87□□□□□ -0.19
NKX2-1P43699 AL365209.1-201ENST00000624418 6473 ntBASIC13.87□□□□□ -0.19
NKX2-1P43699 ARFGAP1-210ENST00000519273 3176 ntTSL 2 BASIC13.87□□□□□ -0.19
NKX2-1P43699 SRRM2-AS1-203ENST00000571305 1344 ntTSL 2 BASIC13.87□□□□□ -0.19
NKX2-1P43699 SIGLEC10-205ENST00000439889 2126 ntTSL 1 (best) BASIC13.87□□□□□ -0.19
NKX2-1P43699 SLC6A11-201ENST00000254488 4296 ntAPPRIS P1 TSL 1 (best) BASIC13.87□□□□□ -0.19
NKX2-1P43699 CDC25B-204ENST00000379598 2990 ntTSL 2 BASIC13.86□□□□□ -0.19
NKX2-1P43699 UGT8-201ENST00000310836 4084 ntAPPRIS P1 TSL 1 (best) BASIC13.86□□□□□ -0.19
NKX2-1P43699 PI16-201ENST00000373674 2190 ntAPPRIS P1 TSL 1 (best) BASIC13.86□□□□□ -0.19
NKX2-1P43699 RPS6KL1-201ENST00000354625 5195 ntAPPRIS P1 TSL 2 BASIC13.86□□□□□ -0.19
NKX2-1P43699 EIF2B4-212ENST00000622434 1771 ntTSL 5 BASIC13.86□□□□□ -0.19
NKX2-1P43699 LONRF3-203ENST00000422289 2898 ntTSL 2 BASIC13.86□□□□□ -0.19
NKX2-1P43699 IBA57-201ENST00000366711 7817 ntAPPRIS P1 TSL 2 BASIC13.86□□□□□ -0.19
NKX2-1P43699 ARL8B-201ENST00000256496 3005 ntAPPRIS P1 TSL 1 (best) BASIC13.86□□□□□ -0.19
NKX2-1P43699 CDK2AP2-201ENST00000301488 1378 ntAPPRIS P1 TSL 1 (best) BASIC13.86□□□□□ -0.19
NKX2-1P43699 ZDHHC20-201ENST00000320220 1351 ntTSL 1 (best) BASIC13.86□□□□□ -0.19
NKX2-1P43699 AGPAT2-201ENST00000371694 1391 ntTSL 1 (best) BASIC13.86□□□□□ -0.19
NKX2-1P43699 HPCAL1-207ENST00000620771 1941 ntAPPRIS P1 TSL 2 BASIC13.86□□□□□ -0.19
NKX2-1P43699 FO681492.1-203ENST00000622861 1362 ntAPPRIS ALT2 TSL 5 BASIC13.86□□□□□ -0.19
NKX2-1P43699 AC005052.1-201ENST00000625181 2492 ntBASIC13.86□□□□□ -0.19
NKX2-1P43699 LCOR-202ENST00000356016 4834 ntAPPRIS P3 TSL 2 BASIC13.86□□□□□ -0.19
NKX2-1P43699 CLIC6-202ENST00000360731 3860 ntAPPRIS ALT2 TSL 1 (best) BASIC13.86□□□□□ -0.19
NKX2-1P43699 GUCA1A-203ENST00000394237 2233 ntAPPRIS P1 TSL 2 BASIC13.86□□□□□ -0.19
NKX2-1P43699 PXN-201ENST00000228307 3785 ntAPPRIS P4 TSL 1 (best) BASIC13.86□□□□□ -0.19
NKX2-1P43699 FDX1-201ENST00000260270 3206 ntAPPRIS P1 TSL 1 (best) BASIC13.86□□□□□ -0.19
NKX2-1P43699 FBXL5-201ENST00000341285 3385 ntAPPRIS P3 TSL 1 (best) BASIC13.86□□□□□ -0.19
NKX2-1P43699 JRK-203ENST00000571961 2687 ntAPPRIS ALT2 TSL 1 (best) BASIC13.86□□□□□ -0.19
NKX2-1P43699 TK2-221ENST00000620035 5060 ntTSL 2 BASIC13.86□□□□□ -0.19
NKX2-1P43699 PHLDA1-203ENST00000619060 5913 ntAPPRIS P2 TSL 1 (best) BASIC13.86□□□□□ -0.19
NKX2-1P43699 NUDT6-201ENST00000304430 1169 ntAPPRIS P1 TSL 1 (best) BASIC13.86□□□□□ -0.19
NKX2-1P43699 DCTN3-209ENST00000477738 713 ntTSL 3 BASIC13.86□□□□□ -0.19
NKX2-1P43699 AP003733.1-201ENST00000491725 852 ntBASIC13.86□□□□□ -0.19
NKX2-1P43699 AC098829.1-201ENST00000502344 630 ntTSL 3 BASIC13.86□□□□□ -0.19
NKX2-1P43699 CNTD2-203ENST00000513948 787 ntAPPRIS ALT2 TSL 2 BASIC13.86□□□□□ -0.19
NKX2-1P43699 AC104640.1-201ENST00000562617 2109 ntBASIC13.86□□□□□ -0.19
NKX2-1P43699 NAA38-203ENST00000575071 553 ntTSL 2 BASIC13.86□□□□□ -0.19
NKX2-1P43699 HNF4A-208ENST00000609795 1192 ntTSL 1 (best) BASIC13.86□□□□□ -0.19
NKX2-1P43699 LFNG-205ENST00000402506 2268 ntTSL 2 BASIC13.86□□□□□ -0.19
NKX2-1P43699 C6orf203-202ENST00000405204 1420 ntAPPRIS P1 TSL 2 BASIC13.86□□□□□ -0.19
NKX2-1P43699 PRAMEF20-201ENST00000316412 1597 ntAPPRIS P1 TSL 5 BASIC13.86□□□□□ -0.19
NKX2-1P43699 C16orf71-201ENST00000299320 2722 ntAPPRIS P2 TSL 1 (best) BASIC13.86□□□□□ -0.19
NKX2-1P43699 KIFC1-211ENST00000428849 2706 ntAPPRIS P1 TSL 1 (best) BASIC13.86□□□□□ -0.19
NKX2-1P43699 CASR-202ENST00000498619 5009 ntTSL 1 (best) BASIC13.86□□□□□ -0.19
NKX2-1P43699 APH1A-204ENST00000414276 1718 ntTSL 2 BASIC13.86□□□□□ -0.19
NKX2-1P43699 CALCR-207ENST00000426151 1741 ntAPPRIS P3 TSL 1 (best) BASIC13.86□□□□□ -0.19
NKX2-1P43699 REEP1-208ENST00000538924 1702 ntTSL 5 BASIC13.86□□□□□ -0.19
NKX2-1P43699 AMT-206ENST00000458307 1860 ntTSL 2 BASIC13.86□□□□□ -0.19
NKX2-1P43699 BLK-205ENST00000529894 2017 ntTSL 5 BASIC13.86□□□□□ -0.19
NKX2-1P43699 NOS1AP-201ENST00000361897 4931 ntAPPRIS P3 TSL 1 (best) BASIC13.86□□□□□ -0.19
NKX2-1P43699 CUX1-211ENST00000546411 4212 ntAPPRIS ALT2 TSL 5 BASIC13.86□□□□□ -0.19
NKX2-1P43699 GATA4-206ENST00000528712 2614 ntTSL 2 BASIC13.86□□□□□ -0.19
NKX2-1P43699 ZNF7-207ENST00000528372 2905 ntAPPRIS P3 TSL 1 (best) BASIC13.86□□□□□ -0.19
NKX2-1P43699 BCL2L11-219ENST00000619294 5132 ntTSL 5 BASIC13.86□□□□□ -0.19
NKX2-1P43699 PAK4-208ENST00000599386 5735 ntTSL 1 (best) BASIC13.86□□□□□ -0.19
NKX2-1P43699 TBC1D10C-201ENST00000312390 1497 ntTSL 5 BASIC13.86□□□□□ -0.19
NKX2-1P43699 ZFPM2-201ENST00000407775 4700 ntAPPRIS P1 TSL 1 (best) BASIC13.86□□□□□ -0.19
NKX2-1P43699 ETV4-205ENST00000545954 1775 ntTSL 2 BASIC13.86□□□□□ -0.19
NKX2-1P43699 SCLT1-208ENST00000506368 2096 ntAPPRIS ALT2 TSL 1 (best) BASIC13.86□□□□□ -0.19
NKX2-1P43699 TCF25-202ENST00000263347 2377 ntTSL 5 BASIC13.86□□□□□ -0.19
NKX2-1P43699 TAF1B-201ENST00000263663 2387 ntAPPRIS P1 TSL 1 (best) BASIC13.86□□□□□ -0.19
NKX2-1P43699 PCSK4-201ENST00000300954 2661 ntAPPRIS P1 TSL 1 (best) BASIC13.86□□□□□ -0.19
NKX2-1P43699 EPS8L2-201ENST00000318562 3148 ntAPPRIS P2 TSL 1 (best) BASIC13.86□□□□□ -0.19
NKX2-1P43699 SLC43A2-204ENST00000571650 3261 ntTSL 1 (best) BASIC13.86□□□□□ -0.19
Retrieved 100 of 98,524 protein–RNA pairs in 31.1 ms