Protein–RNA interactions for Protein: Q8WW32

HMGB4, High mobility group protein B4, humanhuman

Predictions only

Length 186 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
HMGB4Q8WW32 FAM53B-AS1-202ENST00000448422 1491 ntTSL 1 (best) BASIC16.89■□□□□ 0.29
HMGB4Q8WW32 MCCC1-215ENST00000629669 2316 ntTSL 5 BASIC16.89■□□□□ 0.29
HMGB4Q8WW32 CLPP-201ENST00000245816 1155 ntAPPRIS P1 TSL 1 (best) BASIC16.89■□□□□ 0.29
HMGB4Q8WW32 POP7-201ENST00000303151 927 ntAPPRIS P1 TSL 1 (best) BASIC16.89■□□□□ 0.29
HMGB4Q8WW32 ZSCAN2-205ENST00000379358 906 ntTSL 1 (best) BASIC16.89■□□□□ 0.29
HMGB4Q8WW32 TNNT3-204ENST00000381558 1258 ntAPPRIS ALT2 TSL 5 BASIC16.89■□□□□ 0.29
HMGB4Q8WW32 TMEM37-202ENST00000409826 794 ntTSL 3 BASIC16.89■□□□□ 0.29
HMGB4Q8WW32 TTC28-AS1-213ENST00000434221 972 ntTSL 3 BASIC16.89■□□□□ 0.29
HMGB4Q8WW32 SLC25A6P5-201ENST00000435663 894 ntBASIC16.89■□□□□ 0.29
HMGB4Q8WW32 C2orf88-205ENST00000443551 692 ntAPPRIS P1 TSL 1 (best) BASIC16.89■□□□□ 0.29
HMGB4Q8WW32 AGGF1-204ENST00000506806 1142 ntTSL 1 (best) BASIC16.89■□□□□ 0.29
HMGB4Q8WW32 MTFR1L-218ENST00000526894 733 ntTSL 4 BASIC16.89■□□□□ 0.29
HMGB4Q8WW32 AC123777.1-201ENST00000534827 1247 ntTSL 3 BASIC16.89■□□□□ 0.29
HMGB4Q8WW32 RBM7-207ENST00000544582 692 ntTSL 3 BASIC16.89■□□□□ 0.29
HMGB4Q8WW32 AC015712.4-202ENST00000558641 1007 ntTSL 4 BASIC16.89■□□□□ 0.29
HMGB4Q8WW32 AC090241.2-202ENST00000602333 633 ntTSL 3 BASIC16.89■□□□□ 0.29
HMGB4Q8WW32 YTHDF3-AS1-201ENST00000603538 718 ntBASIC16.89■□□□□ 0.29
HMGB4Q8WW32 SLC35A3-217ENST00000639807 2767 ntTSL 5 BASIC16.89■□□□□ 0.29
HMGB4Q8WW32 SNED1-204ENST00000401884 4538 ntAPPRIS ALT2 TSL 5 BASIC16.89■□□□□ 0.29
HMGB4Q8WW32 ITPK1-202ENST00000354313 2803 ntTSL 1 (best) BASIC16.89■□□□□ 0.29
HMGB4Q8WW32 F10-202ENST00000375559 1517 ntAPPRIS P1 TSL 1 (best) BASIC16.89■□□□□ 0.29
HMGB4Q8WW32 EIF3B-201ENST00000360876 3055 ntAPPRIS P1 TSL 1 (best) BASIC16.89■□□□□ 0.29
HMGB4Q8WW32 PPARD-202ENST00000337400 2041 ntTSL 5 BASIC16.89■□□□□ 0.29
HMGB4Q8WW32 PCGF3-201ENST00000362003 5685 ntAPPRIS P1 TSL 5 BASIC16.89■□□□□ 0.29
HMGB4Q8WW32 CLEC17A-202ENST00000417570 1399 ntAPPRIS P1 TSL 1 (best) BASIC16.89■□□□□ 0.29
HMGB4Q8WW32 SEMA6D-205ENST00000389425 2318 ntTSL 1 (best) BASIC16.88■□□□□ 0.29
HMGB4Q8WW32 GRIN3B-201ENST00000234389 3281 ntAPPRIS P1 TSL 1 (best) BASIC16.88■□□□□ 0.29
HMGB4Q8WW32 RRAGD-202ENST00000369415 4900 ntAPPRIS P1 TSL 1 (best) BASIC16.88■□□□□ 0.29
HMGB4Q8WW32 C19orf25-207ENST00000588871 2128 ntTSL 5 BASIC16.88■□□□□ 0.29
HMGB4Q8WW32 ADCY6-202ENST00000357869 5748 ntTSL 2 BASIC16.88■□□□□ 0.29
HMGB4Q8WW32 FLOT2-202ENST00000394908 2618 ntAPPRIS P3 TSL 1 (best) BASIC16.88■□□□□ 0.29
HMGB4Q8WW32 LEMD2-214ENST00000614475 2883 ntAPPRIS P1 TSL 5 BASIC16.88■□□□□ 0.29
HMGB4Q8WW32 T-201ENST00000296946 2436 ntAPPRIS P1 TSL 5 BASIC16.88■□□□□ 0.29
HMGB4Q8WW32 FOS-208ENST00000555686 1496 ntTSL 2 BASIC16.88■□□□□ 0.29
HMGB4Q8WW32 SIL1-213ENST00000509534 1714 ntTSL 5 BASIC16.88■□□□□ 0.29
HMGB4Q8WW32 AC131009.4-201ENST00000624048 1740 ntBASIC16.88■□□□□ 0.29
HMGB4Q8WW32 AC093525.9-201ENST00000624961 1746 ntBASIC16.88■□□□□ 0.29
HMGB4Q8WW32 GABRB2-202ENST00000353437 1963 ntAPPRIS P1 TSL 1 (best) BASIC16.88■□□□□ 0.29
HMGB4Q8WW32 ELF2-207ENST00000510408 1965 ntTSL 1 (best) BASIC16.88■□□□□ 0.29
HMGB4Q8WW32 HNRNPD-201ENST00000313899 3033 ntAPPRIS P4 TSL 1 (best) BASIC16.88■□□□□ 0.29
HMGB4Q8WW32 RBPJ-204ENST00000348160 1752 ntAPPRIS ALT1 TSL 1 (best) BASIC16.88■□□□□ 0.29
HMGB4Q8WW32 POC1A-203ENST00000474012 1760 ntAPPRIS ALT2 TSL 2 BASIC16.88■□□□□ 0.29
HMGB4Q8WW32 DCHS2-201ENST00000339452 5064 ntTSL 1 (best) BASIC16.88■□□□□ 0.29
HMGB4Q8WW32 C11orf88-201ENST00000332814 795 ntAPPRIS P4 TSL 5 BASIC16.88■□□□□ 0.29
HMGB4Q8WW32 C1orf43-203ENST00000368516 872 ntTSL 2 BASIC16.88■□□□□ 0.29
HMGB4Q8WW32 LCE1E-201ENST00000368770 1180 ntAPPRIS P2 TSL 1 (best) BASIC16.88■□□□□ 0.29
HMGB4Q8WW32 RAC2-204ENST00000406508 893 ntTSL 5 BASIC16.88■□□□□ 0.29
HMGB4Q8WW32 IL32-206ENST00000440815 920 ntAPPRIS P4 TSL 2 BASIC16.88■□□□□ 0.29
HMGB4Q8WW32 IL32-207ENST00000444393 892 ntAPPRIS P4 TSL 2 BASIC16.88■□□□□ 0.29
HMGB4Q8WW32 AL451067.1-201ENST00000453111 394 ntTSL 2 BASIC16.88■□□□□ 0.29
HMGB4Q8WW32 TPT1-AS1-219ENST00000523506 574 ntTSL 4 BASIC16.88■□□□□ 0.29
HMGB4Q8WW32 IL32-219ENST00000531965 746 ntAPPRIS ALT2 TSL 1 (best) BASIC16.88■□□□□ 0.29
HMGB4Q8WW32 IL32-226ENST00000548476 1014 ntAPPRIS ALT2 TSL 2 BASIC16.88■□□□□ 0.29
HMGB4Q8WW32 TIMM13-202ENST00000591871 631 ntTSL 5 BASIC16.88■□□□□ 0.29
HMGB4Q8WW32 MZF1-202ENST00000594108 1110 ntTSL 1 (best) BASIC16.88■□□□□ 0.29
HMGB4Q8WW32 AL158211.3-201ENST00000607385 239 ntBASIC16.88■□□□□ 0.29
HMGB4Q8WW32 AL035252.4-201ENST00000624174 288 ntBASIC16.88■□□□□ 0.29
HMGB4Q8WW32 HIST1H3D-202ENST00000635200 948 ntAPPRIS P1 TSL 3 BASIC16.88■□□□□ 0.29
HMGB4Q8WW32 DOK4-218ENST00000569548 1848 ntAPPRIS P1 TSL 1 (best) BASIC16.88■□□□□ 0.29
HMGB4Q8WW32 CDCP1-201ENST00000296129 6006 ntAPPRIS P3 TSL 1 (best) BASIC16.88■□□□□ 0.29
HMGB4Q8WW32 PEX5L-206ENST00000465751 2147 ntAPPRIS ALT2 TSL 2 BASIC16.88■□□□□ 0.29
HMGB4Q8WW32 SMG5-201ENST00000361813 4559 ntAPPRIS P1 TSL 1 (best) BASIC16.88■□□□□ 0.29
HMGB4Q8WW32 PLCB2-201ENST00000260402 4616 ntAPPRIS P3 TSL 2 BASIC16.88■□□□□ 0.29
HMGB4Q8WW32 FAM219B-204ENST00000563119 2721 ntAPPRIS P1 TSL 1 (best) BASIC16.88■□□□□ 0.29
HMGB4Q8WW32 KLHL31-201ENST00000370905 5743 ntAPPRIS P1 TSL 1 (best) BASIC16.88■□□□□ 0.29
HMGB4Q8WW32 NCOA6-207ENST00000616167 3271 ntAPPRIS ALT2 TSL 5 BASIC16.88■□□□□ 0.29
HMGB4Q8WW32 C14orf93-205ENST00000397379 1949 ntAPPRIS P1 TSL 1 (best) BASIC16.88■□□□□ 0.29
HMGB4Q8WW32 SLC9A6-208ENST00000636206 4711 ntTSL 1 (best) BASIC16.88■□□□□ 0.29
HMGB4Q8WW32 ZNF512B-201ENST00000369888 5919 ntAPPRIS P1 TSL 1 (best) BASIC16.88■□□□□ 0.29
HMGB4Q8WW32 AL133373.2-201ENST00000623187 2828 ntBASIC16.88■□□□□ 0.29
HMGB4Q8WW32 PSRC1-201ENST00000369903 1710 ntAPPRIS P3 TSL 5 BASIC16.87■□□□□ 0.29
HMGB4Q8WW32 VKORC1L1-201ENST00000360768 5899 ntAPPRIS P1 TSL 1 (best) BASIC16.87■□□□□ 0.29
HMGB4Q8WW32 HGNC:18790-211ENST00000621129 1483 ntAPPRIS P1 TSL 1 (best) BASIC16.87■□□□□ 0.29
HMGB4Q8WW32 RGS3-206ENST00000374136 2092 ntTSL 1 (best) BASIC16.87■□□□□ 0.29
HMGB4Q8WW32 RALGPS1-208ENST00000424082 2362 ntTSL 2 BASIC16.87■□□□□ 0.29
HMGB4Q8WW32 CASZ1-202ENST00000377022 7936 ntAPPRIS P1 TSL 1 (best) BASIC16.87■□□□□ 0.29
HMGB4Q8WW32 GATB-209ENST00000512306 1519 ntTSL 1 (best) BASIC16.87■□□□□ 0.29
HMGB4Q8WW32 SUSD2-201ENST00000358321 3404 ntAPPRIS P1 TSL 1 (best) BASIC16.87■□□□□ 0.29
HMGB4Q8WW32 PTPA-201ENST00000337738 2845 ntTSL 2 BASIC16.87■□□□□ 0.29
HMGB4Q8WW32 LST1-202ENST00000303757 604 ntTSL 1 (best) BASIC16.87■□□□□ 0.29
HMGB4Q8WW32 ENDOV-201ENST00000323854 1226 ntTSL 1 (best) BASIC16.87■□□□□ 0.29
HMGB4Q8WW32 C11orf71-201ENST00000325636 652 ntAPPRIS P3 TSL 1 (best) BASIC16.87■□□□□ 0.29
HMGB4Q8WW32 ERAS-201ENST00000338270 1266 ntAPPRIS P1 BASIC16.87■□□□□ 0.29
HMGB4Q8WW32 CD81-202ENST00000381036 880 ntTSL 3 BASIC16.87■□□□□ 0.29
HMGB4Q8WW32 AL365255.1-202ENST00000413887 363 ntTSL 5 BASIC16.87■□□□□ 0.29
HMGB4Q8WW32 CDK2AP2P3-201ENST00000422476 372 ntBASIC16.87■□□□□ 0.29
HMGB4Q8WW32 AC124057.1-201ENST00000433035 404 ntTSL 5 BASIC16.87■□□□□ 0.29
HMGB4Q8WW32 AC016735.2-201ENST00000438736 569 ntTSL 4 BASIC16.87■□□□□ 0.29
HMGB4Q8WW32 CCDC159-201ENST00000458408 1062 ntAPPRIS P1 TSL 5 BASIC16.87■□□□□ 0.29
HMGB4Q8WW32 AC002310.2-201ENST00000486926 950 ntTSL 2 BASIC16.87■□□□□ 0.29
HMGB4Q8WW32 AC097493.3-201ENST00000509725 367 ntBASIC16.87■□□□□ 0.29
HMGB4Q8WW32 TMSB15B-204ENST00000540220 665 ntAPPRIS P1 TSL 1 (best) BASIC16.87■□□□□ 0.29
HMGB4Q8WW32 TMSB15B-205ENST00000563257 590 ntTSL 4 BASIC16.87■□□□□ 0.29
HMGB4Q8WW32 AC099482.1-201ENST00000563471 481 ntTSL 2 BASIC16.87■□□□□ 0.29
HMGB4Q8WW32 MIR4453-201ENST00000584019 89 ntBASIC16.87■□□□□ 0.29
HMGB4Q8WW32 SSH2-211ENST00000590153 570 ntTSL 4 BASIC16.87■□□□□ 0.29
HMGB4Q8WW32 LINC02560-201ENST00000596379 459 ntBASIC16.87■□□□□ 0.29
HMGB4Q8WW32 HDDC2-203ENST00000608284 538 ntTSL 3 BASIC16.87■□□□□ 0.29
HMGB4Q8WW32 LCN8-205ENST00000612714 638 ntAPPRIS ALT2 TSL 1 (best) BASIC16.87■□□□□ 0.29
HMGB4Q8WW32 CDC42EP4-209ENST00000630622 240 ntTSL 5 BASIC16.87■□□□□ 0.29
Retrieved 100 of 98,524 protein–RNA pairs in 27.9 ms