Protein–RNA interactions for Protein: Q8IVD9

NUDCD3, NudC domain-containing protein 3, humanhuman

Predictions only

Length 361 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
NUDCD3Q8IVD9 AC009084.1-201ENST00000566869 317 ntTSL 5 BASIC16.84■□□□□ 0.29
NUDCD3Q8IVD9 P4HB-223ENST00000576390 439 ntTSL 4 BASIC16.84■□□□□ 0.29
NUDCD3Q8IVD9 MED9-202ENST00000580462 565 ntTSL 1 (best) BASIC16.84■□□□□ 0.29
NUDCD3Q8IVD9 TYMS-201ENST00000323224 1327 ntTSL 1 (best) BASIC16.84■□□□□ 0.29
NUDCD3Q8IVD9 ZACN-201ENST00000334586 1335 ntAPPRIS P1 TSL 1 (best) BASIC16.84■□□□□ 0.29
NUDCD3Q8IVD9 RPLP0-219ENST00000551150 1344 ntAPPRIS P1 TSL 1 (best) BASIC16.84■□□□□ 0.29
NUDCD3Q8IVD9 PPAN-P2RY11-202ENST00000428358 2661 ntTSL 2 BASIC16.84■□□□□ 0.29
NUDCD3Q8IVD9 SIGLEC7-201ENST00000305628 1469 ntTSL 1 (best) BASIC16.84■□□□□ 0.29
NUDCD3Q8IVD9 CHGA-202ENST00000334654 1474 ntTSL 1 (best) BASIC16.84■□□□□ 0.29
NUDCD3Q8IVD9 SMC4-204ENST00000462787 5033 ntTSL 2 BASIC16.84■□□□□ 0.29
NUDCD3Q8IVD9 COPS3-212ENST00000539941 1699 ntTSL 2 BASIC16.84■□□□□ 0.29
NUDCD3Q8IVD9 AMZ2P1-202ENST00000430983 3425 ntTSL 2 BASIC16.84■□□□□ 0.29
NUDCD3Q8IVD9 RNF168-201ENST00000318037 5347 ntAPPRIS P1 TSL 1 (best) BASIC16.84■□□□□ 0.29
NUDCD3Q8IVD9 HS6ST2-203ENST00000406696 1818 ntAPPRIS P1 TSL 1 (best) BASIC16.84■□□□□ 0.29
NUDCD3Q8IVD9 PCCB-209ENST00000469217 1841 ntAPPRIS ALT2 TSL 2 BASIC16.84■□□□□ 0.29
NUDCD3Q8IVD9 AC132938.5-201ENST00000624980 1813 ntBASIC16.84■□□□□ 0.29
NUDCD3Q8IVD9 AFTPH-201ENST00000238855 4113 ntAPPRIS ALT1 TSL 5 BASIC16.84■□□□□ 0.29
NUDCD3Q8IVD9 TVP23B-201ENST00000307767 2064 ntAPPRIS P2 TSL 1 (best) BASIC16.84■□□□□ 0.29
NUDCD3Q8IVD9 USHBP1-203ENST00000431146 2136 ntTSL 2 BASIC16.84■□□□□ 0.29
NUDCD3Q8IVD9 LTBR-201ENST00000228918 2260 ntAPPRIS P3 TSL 1 (best) BASIC16.84■□□□□ 0.29
NUDCD3Q8IVD9 GIT2-220ENST00000553118 2424 ntTSL 5 BASIC16.84■□□□□ 0.29
NUDCD3Q8IVD9 ACAD9-201ENST00000308982 2454 ntAPPRIS P1 TSL 1 (best) BASIC16.84■□□□□ 0.29
NUDCD3Q8IVD9 ANKK1-201ENST00000303941 2543 ntAPPRIS P1 TSL 1 (best) BASIC16.84■□□□□ 0.29
NUDCD3Q8IVD9 TUBB4A-201ENST00000264071 2552 ntAPPRIS P1 TSL 1 (best) BASIC16.84■□□□□ 0.29
NUDCD3Q8IVD9 ABCF3-203ENST00000429586 2624 ntAPPRIS P2 TSL 1 (best) BASIC16.83■□□□□ 0.29
NUDCD3Q8IVD9 ARHGEF28-211ENST00000512883 2936 ntTSL 2 BASIC16.83■□□□□ 0.29
NUDCD3Q8IVD9 KCNC2-209ENST00000550433 2931 ntAPPRIS ALT2 TSL 1 (best) BASIC16.83■□□□□ 0.29
NUDCD3Q8IVD9 CCDC40-201ENST00000269318 1970 ntTSL 2 BASIC16.83■□□□□ 0.28
NUDCD3Q8IVD9 EIF4A3-201ENST00000269349 1734 ntAPPRIS P1 TSL 1 (best) BASIC16.83■□□□□ 0.28
NUDCD3Q8IVD9 MRPS5-201ENST00000272418 1652 ntAPPRIS P1 TSL 1 (best) BASIC16.83■□□□□ 0.28
NUDCD3Q8IVD9 USP42-201ENST00000306177 5155 ntAPPRIS P1 TSL 5 BASIC16.83■□□□□ 0.28
NUDCD3Q8IVD9 ZNF687-201ENST00000324048 5378 ntAPPRIS P1 TSL 1 (best) BASIC16.83■□□□□ 0.28
NUDCD3Q8IVD9 RESP18-201ENST00000333527 795 ntAPPRIS P2 TSL 1 (best) BASIC16.83■□□□□ 0.28
NUDCD3Q8IVD9 HTR3E-201ENST00000335304 1912 ntAPPRIS P3 TSL 1 (best) BASIC16.83■□□□□ 0.28
NUDCD3Q8IVD9 SMTNL2-201ENST00000338859 1919 ntTSL 1 (best) BASIC16.83■□□□□ 0.28
NUDCD3Q8IVD9 SAP130-203ENST00000357702 4173 ntTSL 1 (best) BASIC16.83■□□□□ 0.28
NUDCD3Q8IVD9 FOXP3-202ENST00000376199 2274 ntTSL 2 BASIC16.83■□□□□ 0.28
NUDCD3Q8IVD9 DGAT2-202ENST00000376262 2324 ntTSL 1 (best) BASIC16.83■□□□□ 0.28
NUDCD3Q8IVD9 TRIM27-202ENST00000377199 2967 ntAPPRIS P1 TSL 1 (best) BASIC16.83■□□□□ 0.28
NUDCD3Q8IVD9 UBE2J2-204ENST00000400929 1057 ntTSL 3 BASIC16.83■□□□□ 0.28
NUDCD3Q8IVD9 KLF4P1-201ENST00000412782 1185 ntBASIC16.83■□□□□ 0.28
NUDCD3Q8IVD9 MFSD1-203ENST00000415822 2423 ntTSL 1 (best) BASIC16.83■□□□□ 0.28
NUDCD3Q8IVD9 LINC00271-201ENST00000421378 1580 ntTSL 1 (best) BASIC16.83■□□□□ 0.28
NUDCD3Q8IVD9 NKTR-203ENST00000442970 646 ntTSL 2 BASIC16.83■□□□□ 0.28
NUDCD3Q8IVD9 RFXANK-205ENST00000456252 1325 ntTSL 1 (best) BASIC16.83■□□□□ 0.28
NUDCD3Q8IVD9 GFM1-208ENST00000478576 2147 ntTSL 2 BASIC16.83■□□□□ 0.28
NUDCD3Q8IVD9 AP001122.1-202ENST00000501648 1916 ntTSL 2 BASIC16.83■□□□□ 0.28
NUDCD3Q8IVD9 RBFOX1-212ENST00000550418 4775 ntTSL 1 (best) BASIC16.83■□□□□ 0.28
NUDCD3Q8IVD9 RAB40B-206ENST00000571995 3859 ntAPPRIS P1 TSL 1 (best) BASIC16.83■□□□□ 0.28
NUDCD3Q8IVD9 AC011840.4-201ENST00000578471 627 ntBASIC16.83■□□□□ 0.28
NUDCD3Q8IVD9 C10orf142-202ENST00000623589 1010 ntAPPRIS ALT2 TSL 5 BASIC16.83■□□□□ 0.28
NUDCD3Q8IVD9 DFFB-212ENST00000625756 649 ntTSL 5 BASIC16.83■□□□□ 0.28
NUDCD3Q8IVD9 LINC01714-202ENST00000635451 896 ntTSL 5 BASIC16.83■□□□□ 0.28
NUDCD3Q8IVD9 MTHFR-217ENST00000641820 1569 ntBASIC16.83■□□□□ 0.28
NUDCD3Q8IVD9 SENP6-205ENST00000447266 6501 ntAPPRIS ALT2 TSL 1 (best) BASIC16.83■□□□□ 0.28
NUDCD3Q8IVD9 SHTN1-201ENST00000260777 5308 ntAPPRIS ALT2 TSL 2 BASIC16.83■□□□□ 0.28
NUDCD3Q8IVD9 KIAA2026-202ENST00000399933 6988 ntAPPRIS P1 TSL 5 BASIC16.83■□□□□ 0.28
NUDCD3Q8IVD9 SCARB1-202ENST00000339570 3329 ntTSL 5 BASIC16.83■□□□□ 0.28
NUDCD3Q8IVD9 DACH1-203ENST00000619232 2986 ntAPPRIS ALT2 TSL 5 BASIC16.83■□□□□ 0.28
NUDCD3Q8IVD9 MAD1L1-202ENST00000399654 2762 ntAPPRIS P1 TSL 5 BASIC16.83■□□□□ 0.28
NUDCD3Q8IVD9 SYBU-231ENST00000533065 2645 ntAPPRIS ALT2 TSL 2 BASIC16.83■□□□□ 0.28
NUDCD3Q8IVD9 RALGPS1-203ENST00000373434 2466 ntTSL 1 (best) BASIC16.82■□□□□ 0.28
NUDCD3Q8IVD9 LGR6-205ENST00000439764 2487 ntTSL 1 (best) BASIC16.82■□□□□ 0.28
NUDCD3Q8IVD9 KHK-202ENST00000260599 2411 ntAPPRIS ALT1 TSL 1 (best) BASIC16.82■□□□□ 0.28
NUDCD3Q8IVD9 ZNF408-201ENST00000311764 2442 ntAPPRIS P1 TSL 1 (best) BASIC16.82■□□□□ 0.28
NUDCD3Q8IVD9 C12orf66-204ENST00000544871 2441 ntTSL 2 BASIC16.82■□□□□ 0.28
NUDCD3Q8IVD9 SLC30A5-202ENST00000396591 4360 ntAPPRIS P1 TSL 1 (best) BASIC16.82■□□□□ 0.28
NUDCD3Q8IVD9 SLC29A1-209ENST00000427851 2171 ntAPPRIS P1 TSL 1 (best) BASIC16.82■□□□□ 0.28
NUDCD3Q8IVD9 CCDC59-201ENST00000256151 1983 ntAPPRIS P1 TSL 1 (best) BASIC16.82■□□□□ 0.28
NUDCD3Q8IVD9 LGALS3BP-218ENST00000591778 1961 ntTSL 2 BASIC16.82■□□□□ 0.28
NUDCD3Q8IVD9 CTCF-201ENST00000264010 3939 ntAPPRIS P1 TSL 1 (best) BASIC16.82■□□□□ 0.28
NUDCD3Q8IVD9 MAGEA2B-201ENST00000331220 1946 ntAPPRIS P1 TSL 2 BASIC16.82■□□□□ 0.28
NUDCD3Q8IVD9 FADS2-202ENST00000278840 3630 ntAPPRIS P1 TSL 1 (best) BASIC16.82■□□□□ 0.28
NUDCD3Q8IVD9 HMBOX1-212ENST00000558662 1765 ntTSL 5 BASIC16.82■□□□□ 0.28
NUDCD3Q8IVD9 CALCR-207ENST00000426151 1741 ntAPPRIS P3 TSL 1 (best) BASIC16.82■□□□□ 0.28
NUDCD3Q8IVD9 GCAT-202ENST00000323205 1656 ntTSL 2 BASIC16.82■□□□□ 0.28
NUDCD3Q8IVD9 AC006538.1-201ENST00000567905 1585 ntBASIC16.82■□□□□ 0.28
NUDCD3Q8IVD9 PPP1R21-202ENST00000294952 3142 ntAPPRIS P1 TSL 1 (best) BASIC16.82■□□□□ 0.28
NUDCD3Q8IVD9 NPNT-201ENST00000305572 3003 ntTSL 1 (best) BASIC16.82■□□□□ 0.28
NUDCD3Q8IVD9 HNRNPLL-212ENST00000608859 3035 ntTSL 5 BASIC16.82■□□□□ 0.28
NUDCD3Q8IVD9 IFNL4-204ENST00000634967 1493 ntAPPRIS ALT2 TSL 1 (best) BASIC16.82■□□□□ 0.28
NUDCD3Q8IVD9 CABP4-202ENST00000438189 1426 ntTSL 1 (best) BASIC16.82■□□□□ 0.28
NUDCD3Q8IVD9 SMG1P3-206ENST00000522841 2774 ntTSL 2 BASIC16.82■□□□□ 0.28
NUDCD3Q8IVD9 PLA2G15-202ENST00000413021 1346 ntTSL 2 BASIC16.82■□□□□ 0.28
NUDCD3Q8IVD9 WDR37-206ENST00000620998 1303 ntTSL 5 BASIC16.82■□□□□ 0.28
NUDCD3Q8IVD9 ZBTB22-207ENST00000418724 2645 ntAPPRIS P1 TSL 1 (best) BASIC16.82■□□□□ 0.28
NUDCD3Q8IVD9 RHOC-204ENST00000369633 1295 ntAPPRIS P1 TSL 3 BASIC16.82■□□□□ 0.28
NUDCD3Q8IVD9 C1QC-201ENST00000374637 1089 ntAPPRIS P1 TSL 3 BASIC16.82■□□□□ 0.28
NUDCD3Q8IVD9 RNF152P1-201ENST00000397754 604 ntBASIC16.82■□□□□ 0.28
NUDCD3Q8IVD9 WNT7B-203ENST00000410058 714 ntTSL 3 BASIC16.82■□□□□ 0.28
NUDCD3Q8IVD9 AC012618.3-202ENST00000440004 472 ntTSL 4 BASIC16.82■□□□□ 0.28
NUDCD3Q8IVD9 CDKN2AIPNL-202ENST00000458198 1223 ntAPPRIS P1 TSL 1 (best) BASIC16.82■□□□□ 0.28
NUDCD3Q8IVD9 AC073111.4-202ENST00000486297 585 ntTSL 4 BASIC16.82■□□□□ 0.28
NUDCD3Q8IVD9 MYL6-203ENST00000536128 1221 ntTSL 2 BASIC16.82■□□□□ 0.28
NUDCD3Q8IVD9 AL592071.1-201ENST00000611956 408 ntBASIC16.82■□□□□ 0.28
NUDCD3Q8IVD9 ICA1L-201ENST00000358299 3457 ntAPPRIS P1 TSL 2 BASIC16.82■□□□□ 0.28
NUDCD3Q8IVD9 AIFM1-201ENST00000287295 2260 ntAPPRIS P4 TSL 1 (best) BASIC16.82■□□□□ 0.28
NUDCD3Q8IVD9 AC024909.3-201ENST00000611513 2257 ntBASIC16.82■□□□□ 0.28
NUDCD3Q8IVD9 NKX3-1-201ENST00000380871 3271 ntAPPRIS P3 TSL 1 (best) BASIC16.82■□□□□ 0.28
NUDCD3Q8IVD9 ZNF764-202ENST00000395091 2970 ntAPPRIS ALT1 TSL 2 BASIC16.82■□□□□ 0.28
Retrieved 100 of 98,524 protein–RNA pairs in 28.5 ms