Protein–RNA interactions for Protein: P49639

HOXA1, Homeobox protein Hox-A1, humanhuman

Predicted RBP Predictions only

Length 335 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
HOXA1P49639 KMT2E-201ENST00000257745 6714 ntAPPRIS P1 TSL 1 (best) BASIC14.1□□□□□ -0.15
HOXA1P49639 SLC39A1-201ENST00000310483 2427 ntAPPRIS P1 TSL 1 (best) BASIC14.1□□□□□ -0.15
HOXA1P49639 MYCBPAP-201ENST00000323776 3186 ntAPPRIS P2 TSL 1 (best) BASIC14.1□□□□□ -0.15
HOXA1P49639 PTBP1-201ENST00000349038 3155 ntAPPRIS P3 TSL 1 (best) BASIC14.1□□□□□ -0.15
HOXA1P49639 PTBP1-204ENST00000394601 3185 ntTSL 1 (best) BASIC14.1□□□□□ -0.15
HOXA1P49639 TM9SF1-201ENST00000261789 2452 ntAPPRIS P1 TSL 1 (best) BASIC14.09□□□□□ -0.15
HOXA1P49639 MIR4300HG-201ENST00000500502 1397 ntTSL 1 (best) BASIC14.09□□□□□ -0.15
HOXA1P49639 IRGQ-201ENST00000422989 9685 ntAPPRIS P1 TSL 5 BASIC14.09□□□□□ -0.15
HOXA1P49639 SDCBP2-204ENST00000381812 1550 ntAPPRIS P1 TSL 5 BASIC14.09□□□□□ -0.15
HOXA1P49639 TEN1-CDK3-202ENST00000569284 3287 ntAPPRIS P1 TSL 2 BASIC14.09□□□□□ -0.15
HOXA1P49639 EPHX2-204ENST00000518379 1959 ntAPPRIS ALT2 TSL 5 BASIC14.09□□□□□ -0.15
HOXA1P49639 TACR3-201ENST00000304883 5190 ntAPPRIS P1 TSL 1 (best) BASIC14.09□□□□□ -0.15
HOXA1P49639 SNX18-202ENST00000343017 3140 ntBASIC14.09□□□□□ -0.15
HOXA1P49639 ACTL7B-201ENST00000374667 2379 ntAPPRIS P1 BASIC14.09□□□□□ -0.15
HOXA1P49639 RAB29-205ENST00000446390 1441 ntTSL 2 BASIC14.09□□□□□ -0.15
HOXA1P49639 P2RY6-207ENST00000538328 1425 ntAPPRIS P1 TSL 3 BASIC14.09□□□□□ -0.15
HOXA1P49639 LINC01311-201ENST00000565162 1445 ntBASIC14.09□□□□□ -0.15
HOXA1P49639 AL391807.1-203ENST00000604392 2365 ntBASIC14.09□□□□□ -0.15
HOXA1P49639 PAX4-204ENST00000463946 1613 ntTSL 1 (best) BASIC14.09□□□□□ -0.15
HOXA1P49639 NUDC-201ENST00000321265 1800 ntAPPRIS P1 TSL 1 (best) BASIC14.09□□□□□ -0.15
HOXA1P49639 MRPL49-201ENST00000279242 2019 ntAPPRIS P1 TSL 1 (best) BASIC14.09□□□□□ -0.15
HOXA1P49639 TTC24-201ENST00000368236 2005 ntAPPRIS P1 TSL 5 BASIC14.09□□□□□ -0.15
HOXA1P49639 GINS4-206ENST00000520710 2022 ntTSL 2 BASIC14.09□□□□□ -0.15
HOXA1P49639 AC092068.3-201ENST00000587894 2016 ntBASIC14.09□□□□□ -0.15
HOXA1P49639 PLXDC1-201ENST00000315392 6252 ntAPPRIS P1 TSL 1 (best) BASIC14.09□□□□□ -0.15
HOXA1P49639 NYAP1-201ENST00000300179 3581 ntAPPRIS P1 TSL 2 BASIC14.09□□□□□ -0.15
HOXA1P49639 KLF4-201ENST00000374672 2813 ntAPPRIS P1 TSL 1 (best) BASIC14.09□□□□□ -0.15
HOXA1P49639 WDR97-201ENST00000323662 6916 ntAPPRIS P1 TSL 5 BASIC14.09□□□□□ -0.15
HOXA1P49639 TMEM53-201ENST00000372235 890 ntTSL 2 BASIC14.09□□□□□ -0.15
HOXA1P49639 AC115618.1-201ENST00000376775 549 ntTSL 3 BASIC14.09□□□□□ -0.15
HOXA1P49639 TSPY2-202ENST00000383042 1125 ntAPPRIS ALT2 TSL 1 (best) BASIC14.09□□□□□ -0.15
HOXA1P49639 TSPY3-201ENST00000424594 1125 ntAPPRIS ALT2 TSL 1 (best) BASIC14.09□□□□□ -0.15
HOXA1P49639 TSPY10-202ENST00000444056 1125 ntAPPRIS ALT2 TSL 1 (best) BASIC14.09□□□□□ -0.15
HOXA1P49639 MNX1-AS1-201ENST00000480284 1041 ntTSL 1 (best) BASIC14.09□□□□□ -0.15
HOXA1P49639 PHB2-207ENST00000542912 1138 ntTSL 5 BASIC14.09□□□□□ -0.15
HOXA1P49639 MRPL46-202ENST00000558531 1002 ntTSL 2 BASIC14.09□□□□□ -0.15
HOXA1P49639 ECSIT-207ENST00000588998 818 ntTSL 3 BASIC14.09□□□□□ -0.15
HOXA1P49639 NDUFAB1-201ENST00000007516 717 ntAPPRIS P1 TSL 1 (best) BASIC14.09□□□□□ -0.15
HOXA1P49639 CD151-203ENST00000397421 1486 ntAPPRIS P2 TSL 1 (best) BASIC14.09□□□□□ -0.15
HOXA1P49639 KRAS-203ENST00000556131 1696 ntTSL 1 (best) BASIC14.09□□□□□ -0.15
HOXA1P49639 SULT1C4-201ENST00000272452 1860 ntAPPRIS P1 TSL 1 (best) BASIC14.09□□□□□ -0.15
HOXA1P49639 DTX3-204ENST00000548804 2067 ntAPPRIS P3 TSL 5 BASIC14.09□□□□□ -0.15
HOXA1P49639 UHRF1-204ENST00000616255 2661 ntAPPRIS P1 TSL 1 (best) BASIC14.09□□□□□ -0.15
HOXA1P49639 RAF1-205ENST00000442415 3085 ntTSL 5 BASIC14.09□□□□□ -0.15
HOXA1P49639 EIF4ENIF1-206ENST00000397525 3695 ntAPPRIS P1 TSL 1 (best) BASIC14.09□□□□□ -0.15
HOXA1P49639 MICALL1-201ENST00000215957 4710 ntAPPRIS P1 TSL 1 (best) BASIC14.09□□□□□ -0.15
HOXA1P49639 LINC00841-201ENST00000451929 2126 ntTSL 2 BASIC14.09□□□□□ -0.15
HOXA1P49639 MAP3K1-201ENST00000399503 7011 ntAPPRIS P1 TSL 1 (best) BASIC14.09□□□□□ -0.15
HOXA1P49639 PIK3R1-211ENST00000521381 7011 ntAPPRIS P1 TSL 1 (best) BASIC14.09□□□□□ -0.15
HOXA1P49639 C1orf115-201ENST00000294889 3413 ntAPPRIS P1 TSL 1 (best) BASIC14.09□□□□□ -0.15
HOXA1P49639 TRPC4AP-201ENST00000252015 3226 ntAPPRIS P1 TSL 1 (best) BASIC14.09□□□□□ -0.15
HOXA1P49639 NORAD-201ENST00000565493 5339 ntBASIC14.09□□□□□ -0.15
HOXA1P49639 IRAK1-204ENST00000393687 2049 ntTSL 1 (best) BASIC14.08□□□□□ -0.15
HOXA1P49639 CUL3-201ENST00000264414 6741 ntAPPRIS P1 TSL 1 (best) BASIC14.08□□□□□ -0.15
HOXA1P49639 HDAC5-202ENST00000336057 5040 ntTSL 1 (best) BASIC14.08□□□□□ -0.15
HOXA1P49639 SGPP2-201ENST00000321276 3336 ntAPPRIS P1 TSL 1 (best) BASIC14.08□□□□□ -0.15
HOXA1P49639 PRDM5-202ENST00000394435 2492 ntTSL 1 (best) BASIC14.08□□□□□ -0.15
HOXA1P49639 AGBL3-202ENST00000435976 2495 ntTSL 5 BASIC14.08□□□□□ -0.15
HOXA1P49639 AC011473.4-202ENST00000250366 1602 ntAPPRIS P5 TSL 2 BASIC14.08□□□□□ -0.15
HOXA1P49639 SHISA5-208ENST00000442747 2250 ntTSL 2 BASIC14.08□□□□□ -0.15
HOXA1P49639 KIF21A-202ENST00000361961 6601 ntTSL 1 (best) BASIC14.08□□□□□ -0.15
HOXA1P49639 KRT28-201ENST00000306658 1685 ntAPPRIS P1 TSL 1 (best) BASIC14.08□□□□□ -0.16
HOXA1P49639 PODN-201ENST00000312553 3010 ntAPPRIS P3 TSL 1 (best) BASIC14.08□□□□□ -0.16
HOXA1P49639 PACS2-205ENST00000547217 2809 ntTSL 5 BASIC14.08□□□□□ -0.16
HOXA1P49639 TMED3-201ENST00000299705 1475 ntAPPRIS P1 TSL 1 (best) BASIC14.08□□□□□ -0.16
HOXA1P49639 ZNF19-208ENST00000565637 2612 ntTSL 2 BASIC14.08□□□□□ -0.16
HOXA1P49639 POU5F1-204ENST00000471529 1723 ntTSL 1 (best) BASIC14.08□□□□□ -0.16
HOXA1P49639 SCT-201ENST00000176195 366 ntAPPRIS P1 TSL 1 (best) BASIC14.08□□□□□ -0.16
HOXA1P49639 TMEM234-201ENST00000309777 1082 ntAPPRIS P1 TSL 1 (best) BASIC14.08□□□□□ -0.16
HOXA1P49639 HIST1H2AM-201ENST00000359611 393 ntAPPRIS P1 BASIC14.08□□□□□ -0.16
HOXA1P49639 NDUFA1-201ENST00000371437 766 ntAPPRIS P1 TSL 1 (best) BASIC14.08□□□□□ -0.16
HOXA1P49639 FAM8A6P-201ENST00000407496 1135 ntBASIC14.08□□□□□ -0.16
HOXA1P49639 SNCB-205ENST00000510387 730 ntAPPRIS P1 TSL 2 BASIC14.08□□□□□ -0.16
HOXA1P49639 AC136628.4-201ENST00000520758 535 ntTSL 2 BASIC14.08□□□□□ -0.16
HOXA1P49639 GRM7-203ENST00000389336 2901 ntAPPRIS ALT1 TSL 1 (best) BASIC14.08□□□□□ -0.16
HOXA1P49639 ASIC3-203ENST00000357922 2232 ntTSL 1 (best) BASIC14.08□□□□□ -0.16
HOXA1P49639 SLC22A1-201ENST00000324965 1521 ntTSL 5 BASIC14.08□□□□□ -0.16
HOXA1P49639 MBOAT1-201ENST00000324607 1794 ntAPPRIS P1 TSL 1 (best) BASIC14.08□□□□□ -0.16
HOXA1P49639 LSP1-203ENST00000405957 1785 ntAPPRIS ALT2 TSL 5 BASIC14.08□□□□□ -0.16
HOXA1P49639 AC060834.1-201ENST00000443027 2032 ntBASIC14.08□□□□□ -0.16
HOXA1P49639 LYPLA1-214ENST00000618741 2526 ntTSL 5 BASIC14.08□□□□□ -0.16
HOXA1P49639 TGFB1-201ENST00000221930 2769 ntAPPRIS P1 TSL 1 (best) BASIC14.08□□□□□ -0.16
HOXA1P49639 NDRG2-211ENST00000397858 2054 ntAPPRIS P4 TSL 5 BASIC14.08□□□□□ -0.16
HOXA1P49639 DYSF-201ENST00000258104 6796 ntAPPRIS P3 TSL 1 (best) BASIC14.08□□□□□ -0.16
HOXA1P49639 DYSF-204ENST00000409582 6790 ntAPPRIS ALT2 TSL 1 (best) BASIC14.08□□□□□ -0.16
HOXA1P49639 DYSF-210ENST00000413539 6769 ntAPPRIS ALT2 TSL 1 (best) BASIC14.08□□□□□ -0.16
HOXA1P49639 VTN-201ENST00000226218 2149 ntAPPRIS P1 TSL 1 (best) BASIC14.08□□□□□ -0.16
HOXA1P49639 NEK7-202ENST00000367385 4149 ntAPPRIS P1 TSL 5 BASIC14.08□□□□□ -0.16
HOXA1P49639 ADAM15-208ENST00000447332 2146 ntAPPRIS ALT2 TSL 2 BASIC14.08□□□□□ -0.16
HOXA1P49639 AL359183.1-201ENST00000623796 2132 ntBASIC14.08□□□□□ -0.16
HOXA1P49639 LARP6-201ENST00000299213 4469 ntAPPRIS P1 TSL 1 (best) BASIC14.07□□□□□ -0.16
HOXA1P49639 ULK4-203ENST00000420927 1904 ntTSL 1 (best) BASIC14.07□□□□□ -0.16
HOXA1P49639 SLC35G6-201ENST00000412468 1697 ntAPPRIS P1 TSL 1 (best) BASIC14.07□□□□□ -0.16
HOXA1P49639 LAT-204ENST00000395461 1448 ntAPPRIS ALT2 TSL 1 (best) BASIC14.07□□□□□ -0.16
HOXA1P49639 PXN-201ENST00000228307 3785 ntAPPRIS P4 TSL 1 (best) BASIC14.07□□□□□ -0.16
HOXA1P49639 ZNF713-202ENST00000429591 4339 ntAPPRIS P2 TSL 5 BASIC14.07□□□□□ -0.16
HOXA1P49639 SLC18A1-207ENST00000519026 1980 ntTSL 5 BASIC14.07□□□□□ -0.16
HOXA1P49639 LPAR3-201ENST00000370611 1720 ntAPPRIS P1 TSL 1 (best) BASIC14.07□□□□□ -0.16
HOXA1P49639 GRK6P1-201ENST00000400595 1711 ntBASIC14.07□□□□□ -0.16
HOXA1P49639 ADAMTS13-201ENST00000355699 4442 ntAPPRIS ALT2 TSL 1 (best) BASIC14.07□□□□□ -0.16
Retrieved 100 of 98,524 protein–RNA pairs in 55.9 ms