Protein–RNA interactions for Protein: P42858

HTT, Huntingtin, humanhuman

Predictions only

Length 3,142 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
HTTP42858 RAB39A-201ENST00000320578 1830 ntAPPRIS P1 TSL 1 (best) BASIC18.67■□□□□ 0.58
HTTP42858 MADD-208ENST00000405573 1823 ntTSL 5 BASIC18.67■□□□□ 0.58
HTTP42858 HS6ST2-203ENST00000406696 1818 ntAPPRIS P1 TSL 1 (best) BASIC18.67■□□□□ 0.58
HTTP42858 AC100830.1-201ENST00000560387 1609 ntTSL 2 BASIC18.67■□□□□ 0.58
HTTP42858 MRPS22-212ENST00000495075 1547 ntAPPRIS P2 TSL 1 (best) BASIC18.67■□□□□ 0.58
HTTP42858 GRM2-204ENST00000442933 2064 ntTSL 5 BASIC18.67■□□□□ 0.58
HTTP42858 CXXC5-211ENST00000511048 1892 ntAPPRIS P1 TSL 2 BASIC18.67■□□□□ 0.58
HTTP42858 TRIM7-204ENST00000393319 2320 ntTSL 1 (best) BASIC18.67■□□□□ 0.58
HTTP42858 AFG3L1P-203ENST00000418696 2965 ntTSL 2 BASIC18.67■□□□□ 0.58
HTTP42858 DIP2A-203ENST00000435722 2760 ntTSL 2 BASIC18.67■□□□□ 0.58
HTTP42858 ABCB9-202ENST00000344275 2394 ntTSL 1 (best) BASIC18.67■□□□□ 0.58
HTTP42858 SHBG-202ENST00000380450 1271 ntAPPRIS P3 TSL 1 (best) BASIC18.67■□□□□ 0.58
HTTP42858 OSM-203ENST00000403463 464 ntTSL 3 BASIC18.67■□□□□ 0.58
HTTP42858 SPDYE16-201ENST00000515340 858 ntAPPRIS ALT2 TSL 5 BASIC18.67■□□□□ 0.58
HTTP42858 NOP53-AS1-201ENST00000602048 540 ntTSL 4 BASIC18.67■□□□□ 0.58
HTTP42858 NDUFS7-219ENST00000620479 754 ntTSL 5 BASIC18.67■□□□□ 0.58
HTTP42858 MAEA-201ENST00000264750 2058 ntTSL 2 BASIC18.67■□□□□ 0.58
HTTP42858 KLHL40-201ENST00000287777 2517 ntAPPRIS P1 TSL 1 (best) BASIC18.67■□□□□ 0.58
HTTP42858 CHRFAM7A-202ENST00000397827 2794 ntTSL 5 BASIC18.67■□□□□ 0.58
HTTP42858 PRRT4-205ENST00000489835 2313 ntTSL 1 (best) BASIC18.67■□□□□ 0.58
HTTP42858 ZFP1-208ENST00000568079 1426 ntTSL 2 BASIC18.67■□□□□ 0.58
HTTP42858 AAAS-217ENST00000550286 1652 ntTSL 5 BASIC18.67■□□□□ 0.58
HTTP42858 BLOC1S3-201ENST00000433642 2601 ntAPPRIS P1 TSL 2 BASIC18.67■□□□□ 0.58
HTTP42858 ZNF274-203ENST00000424679 2539 ntTSL 1 (best) BASIC18.67■□□□□ 0.58
HTTP42858 LINC01819-201ENST00000422351 2156 ntTSL 5 BASIC18.67■□□□□ 0.58
HTTP42858 KRT6A-201ENST00000330722 2310 ntAPPRIS P1 TSL 1 (best) BASIC18.67■□□□□ 0.58
HTTP42858 FOXI3-201ENST00000428390 2804 ntAPPRIS P1 TSL 3 BASIC18.67■□□□□ 0.58
HTTP42858 SLC22A17-204ENST00000397267 2455 ntAPPRIS P4 TSL 5 BASIC18.67■□□□□ 0.58
HTTP42858 CSF2-201ENST00000296871 787 ntAPPRIS P1 TSL 1 (best) BASIC18.67■□□□□ 0.58
HTTP42858 BRWD1P1-201ENST00000401091 371 ntBASIC18.67■□□□□ 0.58
HTTP42858 MIR663B-201ENST00000408361 115 ntBASIC18.67■□□□□ 0.58
HTTP42858 NOX4-201ENST00000263317 2388 ntAPPRIS P1 TSL 1 (best) BASIC18.67■□□□□ 0.58
HTTP42858 UBXN11-205ENST00000374221 1792 ntAPPRIS P4 TSL 2 BASIC18.67■□□□□ 0.58
HTTP42858 NCAPH2-205ENST00000420993 2037 ntAPPRIS P3 TSL 1 (best) BASIC18.67■□□□□ 0.58
HTTP42858 TMEM235-201ENST00000374946 2409 ntTSL 5 BASIC18.67■□□□□ 0.58
HTTP42858 THTPA-203ENST00000554789 1595 ntTSL 2 BASIC18.66■□□□□ 0.58
HTTP42858 CYP2W1-202ENST00000340150 2361 ntTSL 2 BASIC18.66■□□□□ 0.58
HTTP42858 BIRC8-201ENST00000426466 2026 ntAPPRIS P1 BASIC18.66■□□□□ 0.58
HTTP42858 PSMC3-201ENST00000298852 1544 ntAPPRIS P2 TSL 1 (best) BASIC18.66■□□□□ 0.58
HTTP42858 VAPA-201ENST00000340541 1227 ntTSL 5 BASIC18.66■□□□□ 0.58
HTTP42858 RBM39-205ENST00000397370 612 ntTSL 2 BASIC18.66■□□□□ 0.58
HTTP42858 GPAA1P2-201ENST00000417923 928 ntBASIC18.66■□□□□ 0.58
HTTP42858 AL139289.2-201ENST00000424948 661 ntTSL 2 BASIC18.66■□□□□ 0.58
HTTP42858 AGER-214ENST00000538695 487 ntTSL 2 BASIC18.66■□□□□ 0.58
HTTP42858 DM1-AS-201ENST00000586251 483 ntTSL 2 BASIC18.66■□□□□ 0.58
HTTP42858 BTNL10-201ENST00000595971 695 ntBASIC18.66■□□□□ 0.58
HTTP42858 AGER-215ENST00000620802 737 ntTSL 1 (best) BASIC18.66■□□□□ 0.58
HTTP42858 AC006453.2-202ENST00000635968 827 ntTSL 5 BASIC18.66■□□□□ 0.58
HTTP42858 AGAP5-203ENST00000581191 2779 ntAPPRIS ALT2 TSL 5 BASIC18.66■□□□□ 0.58
HTTP42858 SNX4-201ENST00000251775 2513 ntAPPRIS P1 TSL 1 (best) BASIC18.66■□□□□ 0.58
HTTP42858 PDLIM7-203ENST00000359895 1567 ntAPPRIS ALT2 TSL 1 (best) BASIC18.66■□□□□ 0.58
HTTP42858 TEAD2-204ENST00000593945 2141 ntTSL 1 (best) BASIC18.66■□□□□ 0.58
HTTP42858 MFGE8-202ENST00000268151 1752 ntTSL 1 (best) BASIC18.66■□□□□ 0.58
HTTP42858 XKR8-201ENST00000373884 2692 ntAPPRIS P1 TSL 1 (best) BASIC18.66■□□□□ 0.58
HTTP42858 EFHD2-201ENST00000375980 2419 ntAPPRIS P1 TSL 1 (best) BASIC18.66■□□□□ 0.58
HTTP42858 NRBP1-204ENST00000379863 2174 ntTSL 5 BASIC18.66■□□□□ 0.58
HTTP42858 ROPN1B-210ENST00000514116 1088 ntAPPRIS P1 TSL 1 (best) BASIC18.66■□□□□ 0.58
HTTP42858 FADS2-205ENST00000517839 469 ntTSL 3 BASIC18.66■□□□□ 0.58
HTTP42858 IGFLR1-211ENST00000592889 782 ntAPPRIS ALT2 TSL 1 (best) BASIC18.66■□□□□ 0.58
HTTP42858 IRF3-223ENST00000599223 1055 ntTSL 1 (best) BASIC18.66■□□□□ 0.58
HTTP42858 FRS3-201ENST00000259748 2094 ntAPPRIS P1 TSL 1 (best) BASIC18.66■□□□□ 0.58
HTTP42858 PRR5-201ENST00000006251 1767 ntTSL 2 BASIC18.66■□□□□ 0.58
HTTP42858 FBXO4-201ENST00000281623 1682 ntAPPRIS P1 TSL 1 (best) BASIC18.66■□□□□ 0.58
HTTP42858 TOP3BP1-201ENST00000420768 1380 ntBASIC18.66■□□□□ 0.58
HTTP42858 SCNN1D-201ENST00000325425 2679 ntAPPRIS ALT2 TSL 1 (best) BASIC18.66■□□□□ 0.58
HTTP42858 RAP1GAP-204ENST00000374761 3318 ntTSL 5 BASIC18.66■□□□□ 0.58
HTTP42858 TBP-207ENST00000616883 1750 ntAPPRIS ALT2 TSL 5 BASIC18.65■□□□□ 0.58
HTTP42858 RPS19-201ENST00000221975 500 ntTSL 3 BASIC18.65■□□□□ 0.58
HTTP42858 S100A16-201ENST00000368703 946 ntAPPRIS P1 TSL 3 BASIC18.65■□□□□ 0.58
HTTP42858 RPL13A-201ENST00000391857 1181 ntAPPRIS P1 TSL 1 (best) BASIC18.65■□□□□ 0.58
HTTP42858 VCPKMT-201ENST00000395859 795 ntTSL 1 (best) BASIC18.65■□□□□ 0.58
HTTP42858 CD28-203ENST00000458610 705 ntTSL 1 (best) BASIC18.65■□□□□ 0.58
HTTP42858 YIF1A-210ENST00000496746 667 ntTSL 2 BASIC18.65■□□□□ 0.58
HTTP42858 AL096870.1-201ENST00000555591 930 ntAPPRIS P1 TSL 4 BASIC18.65■□□□□ 0.58
HTTP42858 ZSCAN30-208ENST00000592278 731 ntTSL 4 BASIC18.65■□□□□ 0.58
HTTP42858 RPS19-202ENST00000593863 526 ntAPPRIS P1 TSL 3 BASIC18.65■□□□□ 0.58
HTTP42858 AC114737.3-201ENST00000636708 570 ntTSL 4 BASIC18.65■□□□□ 0.58
HTTP42858 CBS-203ENST00000398158 2453 ntAPPRIS P1 TSL 1 (best) BASIC18.65■□□□□ 0.58
HTTP42858 CBSL-206ENST00000624406 2453 ntAPPRIS P1 TSL 1 (best) BASIC18.65■□□□□ 0.58
HTTP42858 AC068446.2-201ENST00000500487 2165 ntTSL 2 BASIC18.65■□□□□ 0.58
HTTP42858 SFRP2-201ENST00000274063 2032 ntAPPRIS P1 TSL 1 (best) BASIC18.65■□□□□ 0.58
HTTP42858 FAM189B-204ENST00000368368 2609 ntTSL 1 (best) BASIC18.65■□□□□ 0.58
HTTP42858 ANKRD10-201ENST00000267339 2495 ntAPPRIS P1 TSL 2 BASIC18.65■□□□□ 0.58
HTTP42858 TSPAN7-202ENST00000378482 1909 ntAPPRIS P1 TSL 1 (best) BASIC18.65■□□□□ 0.58
HTTP42858 RANBP3-201ENST00000034275 1762 ntAPPRIS ALT2 TSL 1 (best) BASIC18.65■□□□□ 0.58
HTTP42858 AC098591.1-201ENST00000381811 1613 ntTSL 2 BASIC18.65■□□□□ 0.58
HTTP42858 TMEM218-210ENST00000529609 734 ntTSL 3 BASIC18.65■□□□□ 0.58
HTTP42858 ACYP1-206ENST00000555694 565 ntAPPRIS P1 TSL 3 BASIC18.65■□□□□ 0.58
HTTP42858 AC006116.8-201ENST00000587004 987 ntTSL 2 BASIC18.65■□□□□ 0.58
HTTP42858 LRRC45-201ENST00000306688 2701 ntAPPRIS P1 TSL 1 (best) BASIC18.65■□□□□ 0.58
HTTP42858 PSMD4-201ENST00000368881 1333 ntTSL 5 BASIC18.65■□□□□ 0.58
HTTP42858 ZNF76-202ENST00000339411 2447 ntTSL 1 (best) BASIC18.65■□□□□ 0.58
HTTP42858 CTSB-219ENST00000530640 1389 ntAPPRIS P1 TSL 5 BASIC18.65■□□□□ 0.58
HTTP42858 CCDC17-202ENST00000421127 2216 ntAPPRIS ALT2 TSL 2 BASIC18.65■□□□□ 0.58
HTTP42858 DLGAP4-206ENST00000475894 3110 ntAPPRIS ALT2 TSL 2 BASIC18.65■□□□□ 0.58
HTTP42858 ATP6V0E2-202ENST00000425642 1649 ntAPPRIS P1 TSL 1 (best) BASIC18.65■□□□□ 0.58
HTTP42858 ACTL9-201ENST00000324436 1426 ntAPPRIS P1 BASIC18.65■□□□□ 0.58
HTTP42858 TCF7-201ENST00000342854 3045 ntAPPRIS P2 TSL 1 (best) BASIC18.65■□□□□ 0.58
HTTP42858 TEX26-AS1-201ENST00000411835 1203 ntTSL 1 (best) BASIC18.65■□□□□ 0.58
HTTP42858 APOA1-AS-201ENST00000444200 563 ntTSL 4 BASIC18.65■□□□□ 0.58
Retrieved 100 of 98,524 protein–RNA pairs in 28.9 ms