Protein–RNA interactions for Protein: P08670

VIM, Vimentin, humanhuman

Known RBP Predictions only

Length 466 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
VIMP08670 CARMIL3-201ENST00000342740 4597 ntAPPRIS P1 TSL 5 BASIC17.04■□□□□ 0.32
VIMP08670 RBP4-202ENST00000371467 1314 ntAPPRIS P1 TSL 5 BASIC17.04■□□□□ 0.32
VIMP08670 TLE3-223ENST00000560939 3021 ntTSL 5 BASIC17.04■□□□□ 0.32
VIMP08670 WIPI1-202ENST00000546360 1575 ntTSL 2 BASIC17.04■□□□□ 0.32
VIMP08670 AIF1L-203ENST00000372298 849 ntTSL 3 BASIC17.04■□□□□ 0.32
VIMP08670 NUDT8-202ENST00000376693 728 ntAPPRIS ALT2 TSL 2 BASIC17.04■□□□□ 0.32
VIMP08670 SMIM19-201ENST00000414154 793 ntAPPRIS P1 TSL 1 (best) BASIC17.04■□□□□ 0.32
VIMP08670 AC009947.2-201ENST00000444014 672 ntBASIC17.04■□□□□ 0.32
VIMP08670 MAPKAPK3-203ENST00000446044 2988 ntAPPRIS P1 TSL 1 (best) BASIC17.04■□□□□ 0.32
VIMP08670 AL162457.2-201ENST00000447909 937 ntTSL 3 BASIC17.04■□□□□ 0.32
VIMP08670 CHCHD10-202ENST00000484558 1171 ntTSL 1 (best) BASIC17.04■□□□□ 0.32
VIMP08670 UBA5-213ENST00000494238 2997 ntTSL 1 (best) BASIC17.04■□□□□ 0.32
VIMP08670 IGHV3-52-201ENST00000519770 353 ntBASIC17.04■□□□□ 0.32
VIMP08670 PAQR4-204ENST00000574988 869 ntTSL 2 BASIC17.04■□□□□ 0.32
VIMP08670 SPIB-206ENST00000596074 847 ntTSL 2 BASIC17.04■□□□□ 0.32
VIMP08670 ASNS-201ENST00000175506 2356 ntAPPRIS P1 TSL 1 (best) BASIC17.04■□□□□ 0.32
VIMP08670 OSBP2-201ENST00000332585 4340 ntAPPRIS P3 TSL 1 (best) BASIC17.04■□□□□ 0.32
VIMP08670 EIF2B4-212ENST00000622434 1771 ntTSL 5 BASIC17.04■□□□□ 0.32
VIMP08670 NLE1-202ENST00000442241 2588 ntAPPRIS P1 TSL 1 (best) BASIC17.04■□□□□ 0.32
VIMP08670 PEX16-201ENST00000241041 1479 ntTSL 1 (best) BASIC17.04■□□□□ 0.32
VIMP08670 AL132857.2-201ENST00000634305 1737 ntTSL 5 BASIC17.04■□□□□ 0.32
VIMP08670 MYEF2-201ENST00000267836 2958 ntAPPRIS ALT2 TSL 1 (best) BASIC17.04■□□□□ 0.32
VIMP08670 ZNF302-207ENST00000505365 2955 ntTSL 2 BASIC17.04■□□□□ 0.32
VIMP08670 TRPC4AP-201ENST00000252015 3226 ntAPPRIS P1 TSL 1 (best) BASIC17.04■□□□□ 0.32
VIMP08670 PPT2-246ENST00000375137 1945 ntAPPRIS ALT2 TSL 1 (best) BASIC17.04■□□□□ 0.32
VIMP08670 SALL4-203ENST00000395997 1918 ntTSL 1 (best) BASIC17.04■□□□□ 0.32
VIMP08670 CDK1-204ENST00000448257 1948 ntAPPRIS ALT1 TSL 1 (best) BASIC17.04■□□□□ 0.32
VIMP08670 SLC39A1-201ENST00000310483 2427 ntAPPRIS P1 TSL 1 (best) BASIC17.04■□□□□ 0.32
VIMP08670 TAX1BP3-201ENST00000225525 1377 ntAPPRIS P1 TSL 1 (best) BASIC17.03■□□□□ 0.32
VIMP08670 ALDOA-201ENST00000338110 2384 ntAPPRIS P2 TSL 1 (best) BASIC17.03■□□□□ 0.32
VIMP08670 KIF21A-202ENST00000361961 6601 ntTSL 1 (best) BASIC17.03■□□□□ 0.32
VIMP08670 ANAPC11-211ENST00000575195 1361 ntAPPRIS P1 TSL 2 BASIC17.03■□□□□ 0.32
VIMP08670 CASKIN2-205ENST00000581870 1612 ntTSL 2 BASIC17.03■□□□□ 0.32
VIMP08670 TMEM222-201ENST00000374076 1599 ntAPPRIS P2 TSL 1 (best) BASIC17.03■□□□□ 0.32
VIMP08670 YPEL3-202ENST00000398841 1588 ntTSL 1 (best) BASIC17.03■□□□□ 0.32
VIMP08670 KANK2-201ENST00000586659 5162 ntAPPRIS P3 TSL 1 (best) BASIC17.03■□□□□ 0.32
VIMP08670 COL4A1-204ENST00000543140 2547 ntTSL 1 (best) BASIC17.03■□□□□ 0.32
VIMP08670 SIN3B-202ENST00000379803 5129 ntAPPRIS P3 TSL 1 (best) BASIC17.03■□□□□ 0.32
VIMP08670 NR6A1-205ENST00000487099 7031 ntAPPRIS P3 TSL 1 (best) BASIC17.03■□□□□ 0.32
VIMP08670 SPCS2-201ENST00000263672 2708 ntAPPRIS P2 TSL 1 (best) BASIC17.03■□□□□ 0.32
VIMP08670 TBXAS1-202ENST00000411653 1792 ntTSL 1 (best) BASIC17.03■□□□□ 0.32
VIMP08670 ST8SIA4-202ENST00000451528 1794 ntTSL 1 (best) BASIC17.03■□□□□ 0.32
VIMP08670 SLC9A7-205ENST00000616978 10024 ntAPPRIS ALT2 TSL 1 (best) BASIC17.03■□□□□ 0.32
VIMP08670 SNAPC1-201ENST00000216294 2656 ntAPPRIS P1 TSL 1 (best) BASIC17.03■□□□□ 0.32
VIMP08670 UCKL1-203ENST00000369908 1954 ntAPPRIS P1 TSL 2 BASIC17.03■□□□□ 0.32
VIMP08670 MRPL15-201ENST00000260102 1147 ntAPPRIS P1 TSL 1 (best) BASIC17.03■□□□□ 0.32
VIMP08670 AL050404.1-201ENST00000424566 802 ntTSL 2 BASIC17.03■□□□□ 0.32
VIMP08670 UBE2SP1-201ENST00000450587 669 ntBASIC17.03■□□□□ 0.32
VIMP08670 AL139246.2-201ENST00000456687 1297 ntTSL 5 BASIC17.03■□□□□ 0.32
VIMP08670 RPL26L1-205ENST00000519974 695 ntAPPRIS P1 TSL 3 BASIC17.03■□□□□ 0.32
VIMP08670 ADA-207ENST00000537820 1128 ntTSL 1 (best) BASIC17.03■□□□□ 0.32
VIMP08670 LRRC23-215ENST00000622489 1061 ntTSL 5 BASIC17.03■□□□□ 0.32
VIMP08670 RABGAP1L-201ENST00000251507 2899 ntAPPRIS P1 TSL 2 BASIC17.03■□□□□ 0.32
VIMP08670 ITGB7-201ENST00000267082 2867 ntAPPRIS P1 TSL 1 (best) BASIC17.03■□□□□ 0.32
VIMP08670 ASIC3-201ENST00000297512 1718 ntTSL 1 (best) BASIC17.03■□□□□ 0.32
VIMP08670 WDR74-205ENST00000525752 1724 ntTSL 5 BASIC17.03■□□□□ 0.32
VIMP08670 IQCE-210ENST00000438376 2170 ntAPPRIS ALT2 TSL 5 BASIC17.03■□□□□ 0.32
VIMP08670 CSNK2A1-203ENST00000400217 1451 ntTSL 2 BASIC17.03■□□□□ 0.32
VIMP08670 ZFC3H1-211ENST00000552037 1484 ntTSL 1 (best) BASIC17.03■□□□□ 0.32
VIMP08670 KRT89P-201ENST00000620027 1478 ntBASIC17.03■□□□□ 0.32
VIMP08670 COBL-203ENST00000395542 5339 ntTSL 1 (best) BASIC17.03■□□□□ 0.32
VIMP08670 SLC34A1-204ENST00000512593 1912 ntTSL 2 BASIC17.03■□□□□ 0.32
VIMP08670 APAF1-201ENST00000333991 4539 ntTSL 5 BASIC17.03■□□□□ 0.32
VIMP08670 ADAMTSL1-202ENST00000327883 1864 ntTSL 1 (best) BASIC17.03■□□□□ 0.32
VIMP08670 ACTL8-201ENST00000375406 1861 ntAPPRIS P1 TSL 1 (best) BASIC17.03■□□□□ 0.32
VIMP08670 AL953897.1-201ENST00000376620 1868 ntTSL 1 (best) BASIC17.03■□□□□ 0.32
VIMP08670 STAT5B-201ENST00000293328 5103 ntAPPRIS P1 TSL 1 (best) BASIC17.03■□□□□ 0.32
VIMP08670 FGFR1OP2-201ENST00000229395 2924 ntTSL 2 BASIC17.03■□□□□ 0.32
VIMP08670 GLUD2-201ENST00000328078 2493 ntAPPRIS P1 BASIC17.03■□□□□ 0.32
VIMP08670 REEP3-201ENST00000373758 5205 ntAPPRIS P1 TSL 1 (best) BASIC17.03■□□□□ 0.32
VIMP08670 ATP6V1B2-201ENST00000276390 2875 ntAPPRIS P1 TSL 1 (best) BASIC17.03■□□□□ 0.32
VIMP08670 NR4A3-201ENST00000330847 4982 ntAPPRIS P4 TSL 5 BASIC17.02■□□□□ 0.32
VIMP08670 NCF1-201ENST00000289473 1396 ntAPPRIS P1 TSL 1 (best) BASIC17.02■□□□□ 0.32
VIMP08670 UHRF2-201ENST00000276893 3452 ntAPPRIS P1 TSL 1 (best) BASIC17.02■□□□□ 0.32
VIMP08670 DHX36-201ENST00000308361 3487 ntTSL 1 (best) BASIC17.02■□□□□ 0.32
VIMP08670 LRP8-202ENST00000347547 2382 ntTSL 1 (best) BASIC17.02■□□□□ 0.32
VIMP08670 SLC43A1-204ENST00000528450 2358 ntAPPRIS P1 TSL 1 (best) BASIC17.02■□□□□ 0.32
VIMP08670 PROK1-201ENST00000271331 1338 ntAPPRIS P1 TSL 1 (best) BASIC17.02■□□□□ 0.32
VIMP08670 FBN2-205ENST00000508989 4987 ntTSL 2 BASIC17.02■□□□□ 0.32
VIMP08670 MUTYH-201ENST00000354383 1744 ntAPPRIS P4 TSL 1 (best) BASIC17.02■□□□□ 0.32
VIMP08670 ABHD16A-201ENST00000395952 2103 ntAPPRIS P1 TSL 1 (best) BASIC17.02■□□□□ 0.32
VIMP08670 PPP1R21-201ENST00000281394 3137 ntTSL 1 (best) BASIC17.02■□□□□ 0.32
VIMP08670 POLR2A-201ENST00000572844 2083 ntAPPRIS P1 TSL 1 (best) BASIC17.02■□□□□ 0.32
VIMP08670 PEX11G-201ENST00000221480 1062 ntAPPRIS P1 TSL 1 (best) BASIC17.02■□□□□ 0.32
VIMP08670 MCAT-202ENST00000327555 1134 ntTSL 1 (best) BASIC17.02■□□□□ 0.32
VIMP08670 FUOM-203ENST00000368552 762 ntTSL 1 (best) BASIC17.02■□□□□ 0.32
VIMP08670 FAM26F-202ENST00000368605 1117 ntAPPRIS P1 TSL 5 BASIC17.02■□□□□ 0.32
VIMP08670 DAB1-202ENST00000371230 1150 ntTSL 5 BASIC17.02■□□□□ 0.32
VIMP08670 AC007563.2-201ENST00000447289 552 ntTSL 5 BASIC17.02■□□□□ 0.32
VIMP08670 GXYLT1P6-201ENST00000456472 1187 ntBASIC17.02■□□□□ 0.32
VIMP08670 DLEU7-203ENST00000504404 1122 ntAPPRIS ALT2 TSL 1 (best) BASIC17.02■□□□□ 0.32
VIMP08670 KLHL26-205ENST00000599006 989 ntTSL 5 BASIC17.02■□□□□ 0.32
VIMP08670 AC004263.2-201ENST00000617183 678 ntBASIC17.02■□□□□ 0.32
VIMP08670 AL359736.2-201ENST00000621992 437 ntBASIC17.02■□□□□ 0.32
VIMP08670 KIFC3-206ENST00000541240 3047 ntTSL 2 BASIC17.02■□□□□ 0.32
VIMP08670 MAP4K5-201ENST00000013125 4354 ntAPPRIS P1 TSL 1 (best) BASIC17.02■□□□□ 0.32
VIMP08670 RAI14-202ENST00000428746 5064 ntAPPRIS P1 TSL 1 (best) BASIC17.02■□□□□ 0.31
VIMP08670 KDM3A-201ENST00000312912 4886 ntAPPRIS P1 TSL 1 (best) BASIC17.02■□□□□ 0.31
VIMP08670 GLIPR2-205ENST00000619700 1645 ntTSL 3 BASIC17.02■□□□□ 0.31
VIMP08670 GSTZ1-204ENST00000393734 1424 ntTSL 5 BASIC17.02■□□□□ 0.31
Retrieved 100 of 98,524 protein–RNA pairs in 78.6 ms