Protein–RNA interactions for Protein: O15259

NPHP1, Nephrocystin-1, humanhuman

Predictions only

Length 732 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
NPHP1O15259 WNK1-206ENST00000535572 9886 ntAPPRIS ALT2 TSL 1 (best) BASIC21.25■□□□□ 0.99
NPHP1O15259 RUVBL1-202ENST00000464873 2126 ntTSL 2 BASIC21.25■□□□□ 0.99
NPHP1O15259 RESP18-201ENST00000333527 795 ntAPPRIS P2 TSL 1 (best) BASIC21.25■□□□□ 0.99
NPHP1O15259 CKS1B-202ENST00000368436 820 ntTSL 2 BASIC21.25■□□□□ 0.99
NPHP1O15259 PSMA8-203ENST00000415576 1280 ntAPPRIS ALT2 TSL 1 (best) BASIC21.25■□□□□ 0.99
NPHP1O15259 PLAC9P1-202ENST00000433290 400 ntTSL 2 BASIC21.25■□□□□ 0.99
NPHP1O15259 CARNS1-202ENST00000445895 3971 ntAPPRIS P1 TSL 5 BASIC21.25■□□□□ 0.99
NPHP1O15259 AL807752.3-201ENST00000456356 748 ntTSL 2 BASIC21.25■□□□□ 0.99
NPHP1O15259 AL139099.2-201ENST00000555043 2469 ntTSL 2 BASIC21.25■□□□□ 0.99
NPHP1O15259 AC133550.1-201ENST00000563565 295 ntTSL 3 BASIC21.25■□□□□ 0.99
NPHP1O15259 AC013565.3-202ENST00000570120 460 ntTSL 2 BASIC21.25■□□□□ 0.99
NPHP1O15259 TIMM13-202ENST00000591871 631 ntTSL 5 BASIC21.25■□□□□ 0.99
NPHP1O15259 LINC02560-201ENST00000596379 459 ntBASIC21.25■□□□□ 0.99
NPHP1O15259 PGPEP1-209ENST00000604499 769 ntTSL 5 BASIC21.25■□□□□ 0.99
NPHP1O15259 CKMT1B-215ENST00000627381 1074 ntTSL 5 BASIC21.25■□□□□ 0.99
NPHP1O15259 GIGYF1-201ENST00000275732 6530 ntAPPRIS P1 TSL 1 (best) BASIC21.25■□□□□ 0.99
NPHP1O15259 TBXAS1-202ENST00000411653 1792 ntTSL 1 (best) BASIC21.25■□□□□ 0.99
NPHP1O15259 ARNT-212ENST00000515192 2892 ntTSL 1 (best) BASIC21.25■□□□□ 0.99
NPHP1O15259 DOK7-201ENST00000340083 2562 ntAPPRIS P1 TSL 1 (best) BASIC21.25■□□□□ 0.99
NPHP1O15259 DOK7-203ENST00000507039 2551 ntTSL 2 BASIC21.25■□□□□ 0.99
NPHP1O15259 ANKS3-202ENST00000446014 2265 ntTSL 5 BASIC21.25■□□□□ 0.99
NPHP1O15259 CAPN5-205ENST00000529629 2333 ntAPPRIS P1 TSL 1 (best) BASIC21.24■□□□□ 0.99
NPHP1O15259 LGMN-211ENST00000555699 1728 ntTSL 5 BASIC21.24■□□□□ 0.99
NPHP1O15259 ZNF133-211ENST00000538547 2245 ntTSL 2 BASIC21.24■□□□□ 0.99
NPHP1O15259 CPSF6-203ENST00000456847 1915 ntTSL 5 BASIC21.24■□□□□ 0.99
NPHP1O15259 CGB7-202ENST00000596965 1949 ntAPPRIS P1 TSL 2 BASIC21.24■□□□□ 0.99
NPHP1O15259 WASH6P-202ENST00000359512 1437 ntBASIC21.24■□□□□ 0.99
NPHP1O15259 SRP19-201ENST00000282999 937 ntTSL 1 (best) BASIC21.24■□□□□ 0.99
NPHP1O15259 ITGA9-AS1-201ENST00000366441 895 ntTSL 3 BASIC21.24■□□□□ 0.99
NPHP1O15259 TMEM37-202ENST00000409826 794 ntTSL 3 BASIC21.24■□□□□ 0.99
NPHP1O15259 GSAP-205ENST00000430584 600 ntTSL 5 BASIC21.24■□□□□ 0.99
NPHP1O15259 SPDYE14P-201ENST00000442619 822 ntBASIC21.24■□□□□ 0.99
NPHP1O15259 NR2C2AP-204ENST00000538165 891 ntTSL 2 BASIC21.24■□□□□ 0.99
NPHP1O15259 GABARAP-205ENST00000573928 476 ntTSL 1 (best) BASIC21.24■□□□□ 0.99
NPHP1O15259 SECTM1-202ENST00000580437 1030 ntAPPRIS ALT2 TSL 2 BASIC21.24■□□□□ 0.99
NPHP1O15259 IGFLR1-205ENST00000588992 730 ntAPPRIS ALT2 TSL 2 BASIC21.24■□□□□ 0.99
NPHP1O15259 AC005391.1-201ENST00000613285 341 ntTSL 3 BASIC21.24■□□□□ 0.99
NPHP1O15259 LINC00029-201ENST00000370341 1631 ntTSL 1 (best) BASIC21.24■□□□□ 0.99
NPHP1O15259 EWSR1-202ENST00000332035 1989 ntAPPRIS ALT2 TSL 2 BASIC21.24■□□□□ 0.99
NPHP1O15259 ADRA1A-206ENST00000380586 2304 ntTSL 1 (best) BASIC21.24■□□□□ 0.99
NPHP1O15259 AL138781.2-201ENST00000617896 1843 ntBASIC21.24■□□□□ 0.99
NPHP1O15259 ACP5-212ENST00000592828 1699 ntAPPRIS P1 TSL 5 BASIC21.24■□□□□ 0.99
NPHP1O15259 PODNL1-201ENST00000254320 1859 ntTSL 2 BASIC21.24■□□□□ 0.99
NPHP1O15259 PCDHA3-201ENST00000522353 5260 ntAPPRIS P1 TSL 1 (best) BASIC21.24■□□□□ 0.99
NPHP1O15259 HMBS-203ENST00000442944 1548 ntTSL 5 BASIC21.24■□□□□ 0.99
NPHP1O15259 CD40-207ENST00000620709 1522 ntTSL 1 (best) BASIC21.24■□□□□ 0.99
NPHP1O15259 FRMD4A-203ENST00000357447 6821 ntAPPRIS P2 TSL 1 (best) BASIC21.24■□□□□ 0.99
NPHP1O15259 ZFP3-201ENST00000318833 5206 ntAPPRIS P1 TSL 1 (best) BASIC21.23■□□□□ 0.99
NPHP1O15259 RNF183-203ENST00000441031 1366 ntAPPRIS P1 TSL 1 (best) BASIC21.23■□□□□ 0.99
NPHP1O15259 EPN2-201ENST00000314728 4871 ntAPPRIS P4 TSL 1 (best) BASIC21.23■□□□□ 0.99
NPHP1O15259 IDUA-210ENST00000514224 2130 ntTSL 2 BASIC21.23■□□□□ 0.99
NPHP1O15259 PTGER3-201ENST00000306666 2333 ntAPPRIS ALT2 TSL 1 (best) BASIC21.23■□□□□ 0.99
NPHP1O15259 GGT3P-201ENST00000412448 2340 ntTSL 2 BASIC21.23■□□□□ 0.99
NPHP1O15259 PPT2-247ENST00000375143 1754 ntAPPRIS ALT2 TSL 5 BASIC21.23■□□□□ 0.99
NPHP1O15259 KIAA0319L-201ENST00000325722 4789 ntAPPRIS P1 TSL 1 (best) BASIC21.23■□□□□ 0.99
NPHP1O15259 MATN3-202ENST00000421259 1443 ntAPPRIS ALT2 TSL 1 (best) BASIC21.23■□□□□ 0.99
NPHP1O15259 CCDC28B-202ENST00000421922 1415 ntTSL 1 (best) BASIC21.23■□□□□ 0.99
NPHP1O15259 TPM2-201ENST00000329305 1018 ntAPPRIS ALT1 TSL 2 BASIC21.23■□□□□ 0.99
NPHP1O15259 C1orf43-203ENST00000368516 872 ntTSL 2 BASIC21.23■□□□□ 0.99
NPHP1O15259 ALKBH6-202ENST00000378875 973 ntAPPRIS P3 TSL 1 (best) BASIC21.23■□□□□ 0.99
NPHP1O15259 CXCL1-201ENST00000395761 1097 ntAPPRIS P1 TSL 1 (best) BASIC21.23■□□□□ 0.99
NPHP1O15259 RAC2-204ENST00000406508 893 ntTSL 5 BASIC21.23■□□□□ 0.99
NPHP1O15259 AL365255.1-202ENST00000413887 363 ntTSL 5 BASIC21.23■□□□□ 0.99
NPHP1O15259 AC124057.1-201ENST00000433035 404 ntTSL 5 BASIC21.23■□□□□ 0.99
NPHP1O15259 NAGK-205ENST00000443938 1221 ntAPPRIS ALT1 TSL 5 BASIC21.23■□□□□ 0.99
NPHP1O15259 TMEM176B-205ENST00000450753 1006 ntTSL 2 BASIC21.23■□□□□ 0.99
NPHP1O15259 TMSB15B-204ENST00000540220 665 ntAPPRIS P1 TSL 1 (best) BASIC21.23■□□□□ 0.99
NPHP1O15259 LINC01089-211ENST00000543334 1282 ntTSL 4 BASIC21.23■□□□□ 0.99
NPHP1O15259 ZNF606-202ENST00000546715 636 ntTSL 4 BASIC21.23■□□□□ 0.99
NPHP1O15259 NDUFA4L2-202ENST00000554503 1177 ntAPPRIS P1 TSL 1 (best) BASIC21.23■□□□□ 0.99
NPHP1O15259 AC005225.4-201ENST00000557330 545 ntBASIC21.23■□□□□ 0.99
NPHP1O15259 TMSB15B-205ENST00000563257 590 ntTSL 4 BASIC21.23■□□□□ 0.99
NPHP1O15259 AC008761.3-201ENST00000624803 892 ntBASIC21.23■□□□□ 0.99
NPHP1O15259 BPGM-202ENST00000393132 2051 ntAPPRIS P1 TSL 5 BASIC21.23■□□□□ 0.99
NPHP1O15259 UBE2D2-202ENST00000398733 2702 ntAPPRIS P2 TSL 1 (best) BASIC21.23■□□□□ 0.99
NPHP1O15259 MCMBP-201ENST00000360003 4169 ntAPPRIS P3 TSL 2 BASIC21.23■□□□□ 0.99
NPHP1O15259 GRAP2-202ENST00000407075 1304 ntAPPRIS P1 TSL 1 (best) BASIC21.23■□□□□ 0.99
NPHP1O15259 NRXN1-204ENST00000401669 5870 ntAPPRIS ALT1 TSL 5 BASIC21.23■□□□□ 0.99
NPHP1O15259 SPAST-202ENST00000345662 5116 ntAPPRIS ALT1 TSL 1 (best) BASIC21.22■□□□□ 0.99
NPHP1O15259 POLR2J4-203ENST00000326391 1422 ntTSL 1 (best) BASIC21.22■□□□□ 0.99
NPHP1O15259 ISLR2-203ENST00000435464 4259 ntAPPRIS P1 TSL 2 BASIC21.22■□□□□ 0.99
NPHP1O15259 TCAP-201ENST00000309889 2123 ntAPPRIS P1 TSL 1 (best) BASIC21.22■□□□□ 0.99
NPHP1O15259 BCS1L-212ENST00000439945 1483 ntAPPRIS P1 TSL 5 BASIC21.22■□□□□ 0.99
NPHP1O15259 AL353732.1-201ENST00000569618 1459 ntBASIC21.22■□□□□ 0.99
NPHP1O15259 ZSCAN2-205ENST00000379358 906 ntTSL 1 (best) BASIC21.22■□□□□ 0.99
NPHP1O15259 TNNT3-204ENST00000381558 1258 ntAPPRIS ALT2 TSL 5 BASIC21.22■□□□□ 0.99
NPHP1O15259 FAM207CP-201ENST00000443486 507 ntBASIC21.22■□□□□ 0.99
NPHP1O15259 MTFR1L-218ENST00000526894 733 ntTSL 4 BASIC21.22■□□□□ 0.99
NPHP1O15259 INO80E-210ENST00000567705 880 ntTSL 3 BASIC21.22■□□□□ 0.99
NPHP1O15259 AC067852.1-201ENST00000585572 594 ntTSL 4 BASIC21.22■□□□□ 0.99
NPHP1O15259 AL158211.3-201ENST00000607385 239 ntBASIC21.22■□□□□ 0.99
NPHP1O15259 RBP1-207ENST00000619087 516 ntAPPRIS P1 TSL 1 (best) BASIC21.22■□□□□ 0.99
NPHP1O15259 PSAP-205ENST00000610929 1969 ntTSL 1 (best) BASIC21.22■□□□□ 0.99
NPHP1O15259 MTMR12-201ENST00000264934 2215 ntTSL 2 BASIC21.22■□□□□ 0.99
NPHP1O15259 MATN4-203ENST00000372754 2200 ntAPPRIS ALT2 TSL 5 BASIC21.22■□□□□ 0.99
NPHP1O15259 TTLL10-203ENST00000379290 2283 ntAPPRIS P1 TSL 1 (best) BASIC21.22■□□□□ 0.99
NPHP1O15259 PAK4-201ENST00000321944 2555 ntTSL 1 (best) BASIC21.22■□□□□ 0.99
NPHP1O15259 ARHGEF4-205ENST00000409359 5489 ntTSL 5 BASIC21.22■□□□□ 0.99
NPHP1O15259 PNPLA2-201ENST00000336615 2428 ntAPPRIS P1 TSL 1 (best) BASIC21.21■□□□□ 0.99
NPHP1O15259 BRPF1-201ENST00000383829 4736 ntAPPRIS ALT1 TSL 1 (best) BASIC21.21■□□□□ 0.99
Retrieved 100 of 98,524 protein–RNA pairs in 46.3 ms