Protein–RNA interactions for Protein: O00635

TRIM38, E3 ubiquitin-protein ligase TRIM38, humanhuman

Predictions only

Length 465 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
TRIM38O00635 PSMD12-202ENST00000357146 2437 ntTSL 2 BASIC17.05■□□□□ 0.32
TRIM38O00635 LINC00905-202ENST00000588117 1768 ntTSL 1 (best) BASIC17.05■□□□□ 0.32
TRIM38O00635 PRSS16-201ENST00000230582 2716 ntAPPRIS P1 TSL 1 (best) BASIC17.05■□□□□ 0.32
TRIM38O00635 ETFBKMT-202ENST00000395763 2055 ntAPPRIS P1 TSL 1 (best) BASIC17.05■□□□□ 0.32
TRIM38O00635 IMP4-201ENST00000259239 1740 ntAPPRIS P1 TSL 1 (best) BASIC17.04■□□□□ 0.32
TRIM38O00635 MGEA5-202ENST00000361464 5155 ntAPPRIS P1 TSL 1 (best) BASIC17.04■□□□□ 0.32
TRIM38O00635 ARF1-214ENST00000541182 2006 ntAPPRIS P1 TSL 2 BASIC17.04■□□□□ 0.32
TRIM38O00635 KIAA1147-202ENST00000536163 7296 ntAPPRIS P1 TSL 1 (best) BASIC17.04■□□□□ 0.32
TRIM38O00635 DDIT4L-201ENST00000273990 2604 ntAPPRIS P1 TSL 1 (best) BASIC17.04■□□□□ 0.32
TRIM38O00635 NR1H3-202ENST00000405576 1352 ntTSL 5 BASIC17.04■□□□□ 0.32
TRIM38O00635 ZNF79-204ENST00000617266 1969 ntTSL 3 BASIC17.04■□□□□ 0.32
TRIM38O00635 OTUB1-202ENST00000422031 2297 ntAPPRIS ALT1 TSL 5 BASIC17.04■□□□□ 0.32
TRIM38O00635 FAM184A-214ENST00000621231 4048 ntTSL 5 BASIC17.04■□□□□ 0.32
TRIM38O00635 AC011473.4-202ENST00000250366 1602 ntAPPRIS P5 TSL 2 BASIC17.04■□□□□ 0.32
TRIM38O00635 GHRHR-201ENST00000326139 1602 ntAPPRIS P1 TSL 1 (best) BASIC17.04■□□□□ 0.32
TRIM38O00635 NSDHL-203ENST00000440023 1630 ntAPPRIS P2 TSL 5 BASIC17.04■□□□□ 0.32
TRIM38O00635 TBPL1-208ENST00000613034 1625 ntAPPRIS P1 TSL 2 BASIC17.04■□□□□ 0.32
TRIM38O00635 FAM3D-201ENST00000358781 1319 ntAPPRIS P1 TSL 1 (best) BASIC17.04■□□□□ 0.32
TRIM38O00635 KRT18P28-201ENST00000453838 1332 ntBASIC17.04■□□□□ 0.32
TRIM38O00635 TCP10L2-202ENST00000366832 2185 ntAPPRIS P2 TSL 1 (best) BASIC17.04■□□□□ 0.32
TRIM38O00635 SEC23A-203ENST00000545328 2734 ntTSL 2 BASIC17.04■□□□□ 0.32
TRIM38O00635 COBL-201ENST00000265136 5291 ntAPPRIS P1 TSL 1 (best) BASIC17.04■□□□□ 0.32
TRIM38O00635 MYL6-202ENST00000348108 722 ntAPPRIS ALT1 TSL 3 BASIC17.04■□□□□ 0.32
TRIM38O00635 GSTO1-202ENST00000369713 972 ntAPPRIS P1 TSL 1 (best) BASIC17.04■□□□□ 0.32
TRIM38O00635 HSD17B8-203ENST00000374662 990 ntAPPRIS P1 TSL 1 (best) BASIC17.04■□□□□ 0.32
TRIM38O00635 SPDYC-201ENST00000377185 991 ntAPPRIS P1 TSL 1 (best) BASIC17.04■□□□□ 0.32
TRIM38O00635 MRPL23-201ENST00000381514 919 ntTSL 3 BASIC17.04■□□□□ 0.32
TRIM38O00635 TSTD1-204ENST00000423014 593 ntAPPRIS ALT2 TSL 2 BASIC17.04■□□□□ 0.32
TRIM38O00635 PRSS29P-201ENST00000440800 595 ntBASIC17.04■□□□□ 0.32
TRIM38O00635 AL669831.5-202ENST00000457084 566 ntTSL 4 BASIC17.04■□□□□ 0.32
TRIM38O00635 AC063976.1-201ENST00000457890 381 ntTSL 2 BASIC17.04■□□□□ 0.32
TRIM38O00635 MAL2-202ENST00000531508 892 ntTSL 3 BASIC17.04■□□□□ 0.32
TRIM38O00635 HOXD8-204ENST00000544999 1235 ntAPPRIS ALT2 TSL 5 BASIC17.04■□□□□ 0.32
TRIM38O00635 PSME1-205ENST00000559123 1033 ntTSL 5 BASIC17.04■□□□□ 0.32
TRIM38O00635 AC018558.2-201ENST00000566562 480 ntTSL 3 BASIC17.04■□□□□ 0.32
TRIM38O00635 ARHGEF25-208ENST00000616622 2103 ntTSL 2 BASIC17.04■□□□□ 0.32
TRIM38O00635 ROBO3-221ENST00000543966 1520 ntTSL 1 (best) BASIC17.04■□□□□ 0.32
TRIM38O00635 RNF19A-201ENST00000341084 4285 ntAPPRIS P1 TSL 5 BASIC17.04■□□□□ 0.32
TRIM38O00635 ZYG11A-202ENST00000371532 3942 ntTSL 5 BASIC17.04■□□□□ 0.32
TRIM38O00635 DYDC2-202ENST00000372197 2022 ntAPPRIS P3 TSL 1 (best) BASIC17.04■□□□□ 0.32
TRIM38O00635 GINS4-206ENST00000520710 2022 ntTSL 2 BASIC17.04■□□□□ 0.32
TRIM38O00635 TMEM65-201ENST00000297632 9029 ntAPPRIS P1 TSL 1 (best) BASIC17.04■□□□□ 0.32
TRIM38O00635 PEX16-201ENST00000241041 1479 ntTSL 1 (best) BASIC17.04■□□□□ 0.32
TRIM38O00635 TSC22D3-203ENST00000372383 2266 ntTSL 2 BASIC17.04■□□□□ 0.32
TRIM38O00635 SGPP1-201ENST00000247225 3312 ntAPPRIS P1 TSL 1 (best) BASIC17.04■□□□□ 0.32
TRIM38O00635 SLC29A2-202ENST00000357440 2514 ntAPPRIS P1 TSL 1 (best) BASIC17.04■□□□□ 0.32
TRIM38O00635 POLR3E-203ENST00000418581 2529 ntTSL 2 BASIC17.04■□□□□ 0.32
TRIM38O00635 PDE9A-203ENST00000335440 1728 ntTSL 1 (best) BASIC17.04■□□□□ 0.32
TRIM38O00635 STOX1-204ENST00000399169 3281 ntAPPRIS P1 TSL 1 (best) BASIC17.04■□□□□ 0.32
TRIM38O00635 OS9-205ENST00000413095 1660 ntTSL 2 BASIC17.04■□□□□ 0.32
TRIM38O00635 TRIM60-203ENST00000508504 1674 ntAPPRIS P1 TSL 1 (best) BASIC17.04■□□□□ 0.32
TRIM38O00635 FAM234A-202ENST00000301679 1936 ntTSL 2 BASIC17.04■□□□□ 0.32
TRIM38O00635 SHOX-204ENST00000554971 1902 ntAPPRIS P1 TSL 1 (best) BASIC17.04■□□□□ 0.32
TRIM38O00635 TOM1L1-204ENST00000570371 2442 ntTSL 5 BASIC17.04■□□□□ 0.32
TRIM38O00635 BAP1-202ENST00000460680 3937 ntAPPRIS P1 TSL 1 (best) BASIC17.03■□□□□ 0.32
TRIM38O00635 TMEM175-201ENST00000264771 1860 ntAPPRIS P1 TSL 1 (best) BASIC17.03■□□□□ 0.32
TRIM38O00635 AC008969.1-203ENST00000313957 1897 ntTSL 2 BASIC17.03■□□□□ 0.32
TRIM38O00635 AC125494.1-203ENST00000396799 1622 ntTSL 1 (best) BASIC17.03■□□□□ 0.32
TRIM38O00635 PC-208ENST00000529047 1607 ntTSL 3 BASIC17.03■□□□□ 0.32
TRIM38O00635 KRT85-202ENST00000544265 1387 ntTSL 2 BASIC17.03■□□□□ 0.32
TRIM38O00635 VAC14-201ENST00000261776 3099 ntAPPRIS P1 TSL 1 (best) BASIC17.03■□□□□ 0.32
TRIM38O00635 OSBP2-211ENST00000446658 2836 ntAPPRIS ALT2 TSL 1 (best) BASIC17.03■□□□□ 0.32
TRIM38O00635 RASA2-202ENST00000452898 2562 ntAPPRIS ALT2 TSL 5 BASIC17.03■□□□□ 0.32
TRIM38O00635 GLUD1-201ENST00000277865 3039 ntAPPRIS P1 TSL 1 (best) BASIC17.03■□□□□ 0.32
TRIM38O00635 KLC1-202ENST00000334553 2524 ntTSL 5 BASIC17.03■□□□□ 0.32
TRIM38O00635 CENPN-202ENST00000305850 2481 ntAPPRIS P1 TSL 1 (best) BASIC17.03■□□□□ 0.32
TRIM38O00635 LTF-203ENST00000426532 2494 ntTSL 2 BASIC17.03■□□□□ 0.32
TRIM38O00635 PRKN-202ENST00000366892 1505 ntTSL 5 BASIC17.03■□□□□ 0.32
TRIM38O00635 TMEM198B-203ENST00000482378 2230 ntTSL 1 (best) BASIC17.03■□□□□ 0.32
TRIM38O00635 AC004835.1-201ENST00000428222 2907 ntTSL 5 BASIC17.03■□□□□ 0.32
TRIM38O00635 LYPLA2-204ENST00000374505 907 ntTSL 3 BASIC17.03■□□□□ 0.32
TRIM38O00635 PIGBOS1-201ENST00000436697 866 ntAPPRIS P2 TSL 2 BASIC17.03■□□□□ 0.32
TRIM38O00635 CFL1-202ENST00000524553 860 ntTSL 2 BASIC17.03■□□□□ 0.32
TRIM38O00635 AC069503.2-201ENST00000546333 576 ntAPPRIS P1 TSL 5 BASIC17.03■□□□□ 0.32
TRIM38O00635 AC025259.3-201ENST00000564531 542 ntTSL 3 BASIC17.03■□□□□ 0.32
TRIM38O00635 OAZ1-202ENST00000582888 969 ntAPPRIS ALT1 TSL 5 BASIC17.03■□□□□ 0.32
TRIM38O00635 RPS15-207ENST00000591032 550 ntTSL 3 BASIC17.03■□□□□ 0.32
TRIM38O00635 AL590235.2-202ENST00000602543 594 ntTSL 5 BASIC17.03■□□□□ 0.32
TRIM38O00635 AC010735.2-201ENST00000607970 584 ntTSL 4 BASIC17.03■□□□□ 0.32
TRIM38O00635 CBWD5-204ENST00000377392 2863 ntTSL 2 BASIC17.03■□□□□ 0.32
TRIM38O00635 PRRT2-219ENST00000637565 1733 ntTSL 5 BASIC17.03■□□□□ 0.32
TRIM38O00635 SMCHD1-201ENST00000320876 8821 ntAPPRIS P1 TSL 5 BASIC17.03■□□□□ 0.32
TRIM38O00635 KLF10-201ENST00000285407 3097 ntAPPRIS P1 TSL 1 (best) BASIC17.03■□□□□ 0.32
TRIM38O00635 TOM1-204ENST00000411850 2390 ntAPPRIS ALT1 TSL 1 (best) BASIC17.03■□□□□ 0.32
TRIM38O00635 KIF16B-203ENST00000408042 4640 ntTSL 1 (best) BASIC17.03■□□□□ 0.32
TRIM38O00635 LETM2-202ENST00000379957 1873 ntAPPRIS ALT2 TSL 5 BASIC17.03■□□□□ 0.32
TRIM38O00635 KRT86-201ENST00000293525 2091 ntAPPRIS P1 TSL 1 (best) BASIC17.03■□□□□ 0.32
TRIM38O00635 LIN54-204ENST00000505397 2742 ntAPPRIS P1 TSL 5 BASIC17.03■□□□□ 0.32
TRIM38O00635 RXRB-201ENST00000374680 2908 ntAPPRIS P3 TSL 1 (best) BASIC17.03■□□□□ 0.32
TRIM38O00635 ASIC3-203ENST00000357922 2232 ntTSL 1 (best) BASIC17.02■□□□□ 0.32
TRIM38O00635 DMTN-223ENST00000523782 2235 ntAPPRIS P1 TSL 5 BASIC17.02■□□□□ 0.32
TRIM38O00635 PIGF-201ENST00000281382 1372 ntAPPRIS P1 TSL 1 (best) BASIC17.02■□□□□ 0.32
TRIM38O00635 SSH1-201ENST00000326470 2432 ntAPPRIS ALT2 TSL 2 BASIC17.02■□□□□ 0.32
TRIM38O00635 CTSL-203ENST00000343150 2177 ntAPPRIS P1 TSL 1 (best) BASIC17.02■□□□□ 0.32
TRIM38O00635 BEST2-202ENST00000549706 2183 ntAPPRIS P1 TSL 5 BASIC17.02■□□□□ 0.32
TRIM38O00635 PRKCSH-205ENST00000587327 2189 ntAPPRIS ALT2 TSL 2 BASIC17.02■□□□□ 0.32
TRIM38O00635 TSPAN17-209ENST00000515708 2361 ntAPPRIS P1 TSL 1 (best) BASIC17.02■□□□□ 0.32
TRIM38O00635 ZNF385A-212ENST00000551109 2369 ntTSL 5 BASIC17.02■□□□□ 0.32
TRIM38O00635 LINC01215-201ENST00000607746 2592 ntTSL 3 BASIC17.02■□□□□ 0.32
TRIM38O00635 PSMD4-201ENST00000368881 1333 ntTSL 5 BASIC17.02■□□□□ 0.32
Retrieved 100 of 98,524 protein–RNA pairs in 57.9 ms