Protein–RNA interactions for Protein: Q9P1Q0

VPS54, Vacuolar protein sorting-associated protein 54, humanhuman

Predictions only

Length 977 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
VPS54Q9P1Q0 LAPTM4B-201ENST00000445593 3173 ntTSL 1 (best) BASIC19.46■□□□□ 0.71
VPS54Q9P1Q0 METTL26-201ENST00000301686 794 ntAPPRIS P1 TSL 2 BASIC19.46■□□□□ 0.71
VPS54Q9P1Q0 BRCC3-202ENST00000340647 1101 ntAPPRIS P2 TSL 2 BASIC19.46■□□□□ 0.71
VPS54Q9P1Q0 ZAR1L-201ENST00000345108 1103 ntAPPRIS P1 TSL 1 (best) BASIC19.46■□□□□ 0.71
VPS54Q9P1Q0 METTL26-205ENST00000397666 726 ntTSL 2 BASIC19.46■□□□□ 0.71
VPS54Q9P1Q0 AGTRAP-205ENST00000400895 786 ntTSL 2 BASIC19.46■□□□□ 0.71
VPS54Q9P1Q0 CD99L2-206ENST00000466436 988 ntAPPRIS P4 TSL 1 (best) BASIC19.46■□□□□ 0.71
VPS54Q9P1Q0 AC010226.1-202ENST00000508517 539 ntTSL 2 BASIC19.46■□□□□ 0.71
VPS54Q9P1Q0 AC106730.1-201ENST00000566722 1090 ntBASIC19.46■□□□□ 0.71
VPS54Q9P1Q0 ZNF445-205ENST00000617032 1291 ntTSL 5 BASIC19.46■□□□□ 0.71
VPS54Q9P1Q0 PTGES3-201ENST00000262033 1920 ntAPPRIS P1 TSL 1 (best) BASIC19.46■□□□□ 0.71
VPS54Q9P1Q0 APBA2-207ENST00000558402 4031 ntAPPRIS P1 TSL 5 BASIC19.46■□□□□ 0.71
VPS54Q9P1Q0 SSB-202ENST00000409333 1782 ntAPPRIS P1 TSL 1 (best) BASIC19.46■□□□□ 0.71
VPS54Q9P1Q0 ENPP1-201ENST00000360971 7442 ntAPPRIS P1 TSL 1 (best) BASIC19.46■□□□□ 0.71
VPS54Q9P1Q0 INPP5J-213ENST00000620191 2306 ntTSL 1 (best) BASIC19.46■□□□□ 0.71
VPS54Q9P1Q0 MAP4K4-202ENST00000324219 7526 ntTSL 5 BASIC19.46■□□□□ 0.71
VPS54Q9P1Q0 GAL3ST4-201ENST00000360039 2537 ntAPPRIS P1 TSL 1 (best) BASIC19.46■□□□□ 0.71
VPS54Q9P1Q0 RSRP1-201ENST00000243189 1502 ntAPPRIS P2 TSL 1 (best) BASIC19.46■□□□□ 0.71
VPS54Q9P1Q0 KCNJ8-201ENST00000240662 2389 ntAPPRIS P1 TSL 1 (best) BASIC19.46■□□□□ 0.71
VPS54Q9P1Q0 TTC8-216ENST00000614125 2377 ntTSL 5 BASIC19.46■□□□□ 0.71
VPS54Q9P1Q0 EDA-203ENST00000374552 5278 ntAPPRIS P3 TSL 1 (best) BASIC19.45■□□□□ 0.7
VPS54Q9P1Q0 PCDHA2-201ENST00000378132 2626 ntAPPRIS ALT2 BASIC19.45■□□□□ 0.7
VPS54Q9P1Q0 PLEKHJ1-211ENST00000589097 2251 ntAPPRIS P1 TSL 2 BASIC19.45■□□□□ 0.7
VPS54Q9P1Q0 MMEL1-201ENST00000378412 2849 ntAPPRIS P1 TSL 2 BASIC19.45■□□□□ 0.7
VPS54Q9P1Q0 SLC25A45-208ENST00000527174 2138 ntAPPRIS P1 TSL 3 BASIC19.45■□□□□ 0.7
VPS54Q9P1Q0 SGO1-201ENST00000263753 2338 ntTSL 1 (best) BASIC19.45■□□□□ 0.7
VPS54Q9P1Q0 AC006277.1-201ENST00000624348 1610 ntBASIC19.45■□□□□ 0.7
VPS54Q9P1Q0 LINC00895-201ENST00000629028 1637 ntBASIC19.45■□□□□ 0.7
VPS54Q9P1Q0 DOLPP1-202ENST00000372546 2177 ntAPPRIS P1 TSL 1 (best) BASIC19.45■□□□□ 0.7
VPS54Q9P1Q0 AHRR-203ENST00000505113 2173 ntAPPRIS ALT2 TSL 1 (best) BASIC19.45■□□□□ 0.7
VPS54Q9P1Q0 POM121C-208ENST00000615331 5835 ntAPPRIS P2 TSL 1 (best) BASIC19.45■□□□□ 0.7
VPS54Q9P1Q0 SYS1-202ENST00000372727 813 ntAPPRIS P1 TSL 3 BASIC19.45■□□□□ 0.7
VPS54Q9P1Q0 TCEAL2-202ENST00000372780 1100 ntAPPRIS P1 TSL 1 (best) BASIC19.45■□□□□ 0.7
VPS54Q9P1Q0 LBH-204ENST00000406087 559 ntTSL 4 BASIC19.45■□□□□ 0.7
VPS54Q9P1Q0 CRCP-205ENST00000431089 942 ntTSL 2 BASIC19.45■□□□□ 0.7
VPS54Q9P1Q0 FAM185BP-201ENST00000443595 716 ntBASIC19.45■□□□□ 0.7
VPS54Q9P1Q0 FTCD-AS1-201ENST00000446649 500 ntTSL 2 BASIC19.45■□□□□ 0.7
VPS54Q9P1Q0 UCHL1-204ENST00000503431 917 ntAPPRIS P1 TSL 3 BASIC19.45■□□□□ 0.7
VPS54Q9P1Q0 RCHY1-208ENST00000512706 1011 ntTSL 3 BASIC19.45■□□□□ 0.7
VPS54Q9P1Q0 AC092115.3-201ENST00000575838 592 ntTSL 5 BASIC19.45■□□□□ 0.7
VPS54Q9P1Q0 ING5-201ENST00000313552 5196 ntAPPRIS P3 TSL 1 (best) BASIC19.45■□□□□ 0.7
VPS54Q9P1Q0 MAEA-202ENST00000303400 2222 ntAPPRIS P1 TSL 1 (best) BASIC19.45■□□□□ 0.7
VPS54Q9P1Q0 LETM2-202ENST00000379957 1873 ntAPPRIS ALT2 TSL 5 BASIC19.45■□□□□ 0.7
VPS54Q9P1Q0 ABCF3-203ENST00000429586 2624 ntAPPRIS P2 TSL 1 (best) BASIC19.45■□□□□ 0.7
VPS54Q9P1Q0 TINF2-208ENST00000558566 1874 ntAPPRIS ALT2 TSL 2 BASIC19.45■□□□□ 0.7
VPS54Q9P1Q0 RGL3-202ENST00000393423 2278 ntTSL 1 (best) BASIC19.45■□□□□ 0.7
VPS54Q9P1Q0 PPRC1-201ENST00000278070 5330 ntAPPRIS P1 TSL 1 (best) BASIC19.45■□□□□ 0.7
VPS54Q9P1Q0 HLA-F-218ENST00000376861 1544 ntAPPRIS ALT2 BASIC19.45■□□□□ 0.7
VPS54Q9P1Q0 TBC1D10C-203ENST00000526387 1520 ntTSL 2 BASIC19.45■□□□□ 0.7
VPS54Q9P1Q0 GABRB3-202ENST00000311550 5781 ntAPPRIS P1 TSL 1 (best) BASIC19.45■□□□□ 0.7
VPS54Q9P1Q0 SLC29A1-208ENST00000393844 2326 ntAPPRIS P1 TSL 1 (best) BASIC19.45■□□□□ 0.7
VPS54Q9P1Q0 GUCY1A2-202ENST00000347596 2532 ntTSL 1 (best) BASIC19.45■□□□□ 0.7
VPS54Q9P1Q0 GLIS1-202ENST00000628545 2807 ntAPPRIS ALT2 TSL 5 BASIC19.44■□□□□ 0.7
VPS54Q9P1Q0 GCK-202ENST00000345378 2421 ntTSL 2 BASIC19.44■□□□□ 0.7
VPS54Q9P1Q0 GPS1-228ENST00000624957 1825 ntAPPRIS ALT1 TSL 5 BASIC19.44■□□□□ 0.7
VPS54Q9P1Q0 FAM184A-201ENST00000338891 4141 ntAPPRIS P4 TSL 1 (best) BASIC19.44■□□□□ 0.7
VPS54Q9P1Q0 SLC5A2-201ENST00000330498 2271 ntAPPRIS P1 TSL 1 (best) BASIC19.44■□□□□ 0.7
VPS54Q9P1Q0 LBX2-AS1-201ENST00000548978 1852 ntTSL 3 BASIC19.44■□□□□ 0.7
VPS54Q9P1Q0 PRR15-201ENST00000319694 1678 ntAPPRIS P1 TSL 1 (best) BASIC19.44■□□□□ 0.7
VPS54Q9P1Q0 COPS3-212ENST00000539941 1699 ntTSL 2 BASIC19.44■□□□□ 0.7
VPS54Q9P1Q0 ACAP1-201ENST00000158762 2512 ntAPPRIS P1 TSL 1 (best) BASIC19.44■□□□□ 0.7
VPS54Q9P1Q0 WDR4-201ENST00000330317 1471 ntAPPRIS P1 TSL 1 (best) BASIC19.44■□□□□ 0.7
VPS54Q9P1Q0 STX10-201ENST00000242770 1099 ntTSL 1 (best) BASIC19.44■□□□□ 0.7
VPS54Q9P1Q0 DPM3-203ENST00000368400 409 ntAPPRIS P1 TSL 1 (best) BASIC19.44■□□□□ 0.7
VPS54Q9P1Q0 RPP38-203ENST00000378202 1030 ntAPPRIS P1 TSL 1 (best) BASIC19.44■□□□□ 0.7
VPS54Q9P1Q0 TNNT3-203ENST00000381557 1019 ntAPPRIS ALT2 TSL 5 BASIC19.44■□□□□ 0.7
VPS54Q9P1Q0 WWOX-204ENST00000408984 1227 ntTSL 1 (best) BASIC19.44■□□□□ 0.7
VPS54Q9P1Q0 SATB1-AS1-201ENST00000414198 737 ntTSL 2 BASIC19.44■□□□□ 0.7
VPS54Q9P1Q0 Z97056.1-201ENST00000433230 556 ntTSL 2 BASIC19.44■□□□□ 0.7
VPS54Q9P1Q0 KRT18P2-201ENST00000447938 1258 ntBASIC19.44■□□□□ 0.7
VPS54Q9P1Q0 AC012363.1-201ENST00000455707 575 ntTSL 4 BASIC19.44■□□□□ 0.7
VPS54Q9P1Q0 CXCL1P1-201ENST00000502804 216 ntBASIC19.44■□□□□ 0.7
VPS54Q9P1Q0 C1QB-203ENST00000509305 1254 ntAPPRIS P1 TSL 1 (best) BASIC19.44■□□□□ 0.7
VPS54Q9P1Q0 MMP17-203ENST00000535004 719 ntTSL 3 BASIC19.44■□□□□ 0.7
VPS54Q9P1Q0 STX10-204ENST00000587230 1136 ntAPPRIS P1 TSL 1 (best) BASIC19.44■□□□□ 0.7
VPS54Q9P1Q0 AC064836.3-201ENST00000607928 673 ntBASIC19.44■□□□□ 0.7
VPS54Q9P1Q0 AC010507.1-201ENST00000633895 436 ntBASIC19.44■□□□□ 0.7
VPS54Q9P1Q0 AMFR-201ENST00000290649 3600 ntAPPRIS P2 TSL 1 (best) BASIC19.44■□□□□ 0.7
VPS54Q9P1Q0 RBBP7-204ENST00000404022 1904 ntTSL 5 BASIC19.44■□□□□ 0.7
VPS54Q9P1Q0 SGSM2-202ENST00000426855 4734 ntAPPRIS ALT1 TSL 1 (best) BASIC19.44■□□□□ 0.7
VPS54Q9P1Q0 GGT6-203ENST00000573591 1730 ntTSL 4 BASIC19.44■□□□□ 0.7
VPS54Q9P1Q0 TLE4-206ENST00000376552 3695 ntAPPRIS P1 TSL 1 (best) BASIC19.44■□□□□ 0.7
VPS54Q9P1Q0 ZYG11A-202ENST00000371532 3942 ntTSL 5 BASIC19.44■□□□□ 0.7
VPS54Q9P1Q0 EPB41-205ENST00000373797 2402 ntTSL 1 (best) BASIC19.44■□□□□ 0.7
VPS54Q9P1Q0 HMGCLL1-202ENST00000308161 1314 ntTSL 2 BASIC19.44■□□□□ 0.7
VPS54Q9P1Q0 SUZ12-204ENST00000580398 3977 ntTSL 1 (best) BASIC19.44■□□□□ 0.7
VPS54Q9P1Q0 BCAS3-204ENST00000585744 2203 ntAPPRIS ALT2 TSL 5 BASIC19.44■□□□□ 0.7
VPS54Q9P1Q0 LILRA6-201ENST00000245621 1395 ntAPPRIS ALT2 TSL 5 BASIC19.44■□□□□ 0.7
VPS54Q9P1Q0 ZNF259P1-201ENST00000407656 1365 ntBASIC19.44■□□□□ 0.7
VPS54Q9P1Q0 HASPIN-201ENST00000325418 2797 ntAPPRIS P1 BASIC19.44■□□□□ 0.7
VPS54Q9P1Q0 MMP17-206ENST00000535291 2301 ntAPPRIS ALT2 TSL 1 (best) BASIC19.43■□□□□ 0.7
VPS54Q9P1Q0 AL138752.2-201ENST00000540557 2591 ntAPPRIS P1 TSL 5 BASIC19.43■□□□□ 0.7
VPS54Q9P1Q0 FTSJ1-202ENST00000348411 1892 ntAPPRIS P4 TSL 1 (best) BASIC19.43■□□□□ 0.7
VPS54Q9P1Q0 PHGDH-202ENST00000369409 1882 ntTSL 1 (best) BASIC19.43■□□□□ 0.7
VPS54Q9P1Q0 SPG7-201ENST00000268704 3076 ntAPPRIS P1 TSL 1 (best) BASIC19.43■□□□□ 0.7
VPS54Q9P1Q0 PPP3CA-201ENST00000323055 4519 ntTSL 1 (best) BASIC19.43■□□□□ 0.7
VPS54Q9P1Q0 ADGRG2-209ENST00000379876 4779 ntTSL 1 (best) BASIC19.43■□□□□ 0.7
VPS54Q9P1Q0 CACNA1A-247ENST00000637769 8648 ntAPPRIS ALT2 TSL 1 (best) BASIC19.43■□□□□ 0.7
VPS54Q9P1Q0 TRIP10-201ENST00000313244 2153 ntTSL 1 (best) BASIC19.43■□□□□ 0.7
VPS54Q9P1Q0 CHTOP-203ENST00000368690 2165 ntAPPRIS ALT1 TSL 1 (best) BASIC19.43■□□□□ 0.7
Retrieved 100 of 98,524 protein–RNA pairs in 46 ms