Protein–RNA interactions for Protein: Q9NP77

SSU72, RNA polymerase II subunit A C-terminal domain phosphatase SSU72, humanhuman

Known RBP Predictions only

Length 194 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SSU72Q9NP77 STARD4-203ENST00000502322 1467 ntTSL 1 (best) BASIC16.8■□□□□ 0.28
SSU72Q9NP77 ALDOA-226ENST00000569798 1499 ntTSL 2 BASIC16.8■□□□□ 0.28
SSU72Q9NP77 TMEM155-202ENST00000394394 1753 ntAPPRIS P2 TSL 3 BASIC16.79■□□□□ 0.28
SSU72Q9NP77 PDCD5-203ENST00000419343 1799 ntTSL 2 BASIC16.79■□□□□ 0.28
SSU72Q9NP77 RPAP3-203ENST00000432584 2133 ntTSL 2 BASIC16.79■□□□□ 0.28
SSU72Q9NP77 MRFAP1-205ENST00000617365 2112 ntTSL 5 BASIC16.79■□□□□ 0.28
SSU72Q9NP77 NUP58-201ENST00000381718 2489 ntAPPRIS ALT1 TSL 2 BASIC16.79■□□□□ 0.28
SSU72Q9NP77 IKBIP-201ENST00000299157 3189 ntAPPRIS P4 TSL 1 (best) BASIC16.79■□□□□ 0.28
SSU72Q9NP77 PCDHA13-202ENST00000409494 4884 ntTSL 1 (best) BASIC16.79■□□□□ 0.28
SSU72Q9NP77 CNPPD1-202ENST00000409789 2073 ntAPPRIS P1 TSL 1 (best) BASIC16.79■□□□□ 0.28
SSU72Q9NP77 BSCL2-201ENST00000278893 1364 ntAPPRIS ALT2 TSL 2 BASIC16.79■□□□□ 0.28
SSU72Q9NP77 ESYT3-201ENST00000289135 1356 ntTSL 5 BASIC16.79■□□□□ 0.28
SSU72Q9NP77 ARHGAP39-202ENST00000377307 4673 ntAPPRIS P3 TSL 5 BASIC16.79■□□□□ 0.28
SSU72Q9NP77 CCDC74A-206ENST00000467992 1347 ntAPPRIS ALT2 TSL 1 (best) BASIC16.79■□□□□ 0.28
SSU72Q9NP77 CTCFL-215ENST00000608158 1984 ntTSL 1 (best) BASIC16.79■□□□□ 0.28
SSU72Q9NP77 CRTC3-202ENST00000420329 5209 ntAPPRIS ALT1 TSL 2 BASIC16.79■□□□□ 0.28
SSU72Q9NP77 MARCH1-203ENST00000503008 5877 ntAPPRIS P1 TSL 1 (best) BASIC16.79■□□□□ 0.28
SSU72Q9NP77 KITLG-202ENST00000347404 1948 ntTSL 1 (best) BASIC16.79■□□□□ 0.28
SSU72Q9NP77 AP000787.1-201ENST00000501356 1926 ntTSL 2 BASIC16.79■□□□□ 0.28
SSU72Q9NP77 RNF152P1-201ENST00000397754 604 ntBASIC16.79■□□□□ 0.28
SSU72Q9NP77 TSPY22P-201ENST00000427496 604 ntBASIC16.79■□□□□ 0.28
SSU72Q9NP77 AC012618.3-202ENST00000440004 472 ntTSL 4 BASIC16.79■□□□□ 0.28
SSU72Q9NP77 SRP19-202ENST00000445150 833 ntTSL 2 BASIC16.79■□□□□ 0.28
SSU72Q9NP77 TBRG4-203ENST00000395655 2225 ntTSL 2 BASIC16.79■□□□□ 0.28
SSU72Q9NP77 PLPPR4-202ENST00000370185 5369 ntAPPRIS P1 TSL 1 (best) BASIC16.79■□□□□ 0.28
SSU72Q9NP77 FUT2-201ENST00000391876 1593 ntAPPRIS P1 TSL 2 BASIC16.79■□□□□ 0.28
SSU72Q9NP77 RAB37-208ENST00000402449 1560 ntAPPRIS P3 TSL 2 BASIC16.79■□□□□ 0.28
SSU72Q9NP77 NFIC-210ENST00000590282 1558 ntTSL 2 BASIC16.79■□□□□ 0.28
SSU72Q9NP77 ZNF804A-201ENST00000302277 4690 ntAPPRIS P1 TSL 1 (best) BASIC16.79■□□□□ 0.28
SSU72Q9NP77 PPP1R3G-201ENST00000405617 4907 ntAPPRIS P1 BASIC16.79■□□□□ 0.28
SSU72Q9NP77 ASXL1-202ENST00000375687 7031 ntAPPRIS P2 TSL 5 BASIC16.79■□□□□ 0.28
SSU72Q9NP77 ASAH1-231ENST00000636577 2129 ntTSL 5 BASIC16.79■□□□□ 0.28
SSU72Q9NP77 RNF169-201ENST00000299563 7823 ntAPPRIS P1 TSL 1 (best) BASIC16.79■□□□□ 0.28
SSU72Q9NP77 PSMD6-210ENST00000492933 1495 ntTSL 1 (best) BASIC16.79■□□□□ 0.28
SSU72Q9NP77 AP000487.1-202ENST00000500185 2602 ntTSL 2 BASIC16.79■□□□□ 0.28
SSU72Q9NP77 SLC5A7-202ENST00000409059 2032 ntAPPRIS P1 TSL 1 (best) BASIC16.79■□□□□ 0.28
SSU72Q9NP77 LONRF3-203ENST00000422289 2898 ntTSL 2 BASIC16.79■□□□□ 0.28
SSU72Q9NP77 MINDY1-202ENST00000361738 1961 ntTSL 2 BASIC16.78■□□□□ 0.28
SSU72Q9NP77 TMUB2-209ENST00000587989 1969 ntAPPRIS ALT1 TSL 3 BASIC16.78■□□□□ 0.28
SSU72Q9NP77 POR-218ENST00000461988 2522 ntAPPRIS P1 TSL 1 (best) BASIC16.78■□□□□ 0.28
SSU72Q9NP77 SH2B1-201ENST00000322610 3095 ntTSL 2 BASIC16.78■□□□□ 0.28
SSU72Q9NP77 RFWD2-204ENST00000367669 3033 ntAPPRIS P1 TSL 1 (best) BASIC16.78■□□□□ 0.28
SSU72Q9NP77 AP005117.1-202ENST00000581724 1908 ntBASIC16.78■□□□□ 0.28
SSU72Q9NP77 CDKN2AIP-203ENST00000504169 2721 ntAPPRIS P1 TSL 1 (best) BASIC16.78■□□□□ 0.28
SSU72Q9NP77 TAF3-201ENST00000344293 4872 ntAPPRIS P1 TSL 1 (best) BASIC16.78■□□□□ 0.28
SSU72Q9NP77 DDX42-208ENST00000578681 4337 ntAPPRIS P1 TSL 1 (best) BASIC16.78■□□□□ 0.28
SSU72Q9NP77 NRXN1-229ENST00000628515 3243 ntTSL 5 BASIC16.78■□□□□ 0.28
SSU72Q9NP77 PAQR6-204ENST00000356983 2143 ntAPPRIS ALT1 TSL 2 BASIC16.78■□□□□ 0.28
SSU72Q9NP77 NTMT1-203ENST00000372483 1315 ntAPPRIS P1 TSL 1 (best) BASIC16.78■□□□□ 0.28
SSU72Q9NP77 ALDOA-201ENST00000338110 2384 ntAPPRIS P2 TSL 1 (best) BASIC16.78■□□□□ 0.28
SSU72Q9NP77 BRF1-206ENST00000446501 2858 ntTSL 2 BASIC16.78■□□□□ 0.28
SSU72Q9NP77 SCYL1-206ENST00000525364 2584 ntTSL 5 BASIC16.78■□□□□ 0.28
SSU72Q9NP77 YTHDF1-202ENST00000370339 3301 ntAPPRIS P1 TSL 1 (best) BASIC16.78■□□□□ 0.28
SSU72Q9NP77 RPS6KA3-201ENST00000379565 7918 ntAPPRIS P1 TSL 1 (best) BASIC16.78■□□□□ 0.28
SSU72Q9NP77 C20orf196-201ENST00000303142 1154 ntAPPRIS P1 TSL 1 (best) BASIC16.78■□□□□ 0.28
SSU72Q9NP77 FGF8-201ENST00000320185 799 ntAPPRIS P4 TSL 1 (best) BASIC16.78■□□□□ 0.28
SSU72Q9NP77 UBL5-201ENST00000358666 513 ntAPPRIS P1 TSL 1 (best) BASIC16.78■□□□□ 0.28
SSU72Q9NP77 RHOC-204ENST00000369633 1295 ntAPPRIS P1 TSL 3 BASIC16.78■□□□□ 0.28
SSU72Q9NP77 ADCYAP1-202ENST00000450565 918 ntAPPRIS P1 TSL 1 (best) BASIC16.78■□□□□ 0.28
SSU72Q9NP77 AC013356.2-201ENST00000559730 729 ntTSL 3 BASIC16.78■□□□□ 0.28
SSU72Q9NP77 MED9-202ENST00000580462 565 ntTSL 1 (best) BASIC16.78■□□□□ 0.28
SSU72Q9NP77 TMEM265-201ENST00000615541 995 ntAPPRIS P1 TSL 1 (best) BASIC16.78■□□□□ 0.28
SSU72Q9NP77 FGF13-208ENST00000626909 1039 ntTSL 2 BASIC16.78■□□□□ 0.28
SSU72Q9NP77 SKP2-201ENST00000274254 1537 ntTSL 1 (best) BASIC16.78■□□□□ 0.28
SSU72Q9NP77 HLA-B-249ENST00000412585 1547 ntAPPRIS P1 BASIC16.78■□□□□ 0.28
SSU72Q9NP77 SNX33P1-201ENST00000592116 1762 ntBASIC16.78■□□□□ 0.28
SSU72Q9NP77 FEN1-201ENST00000305885 2296 ntAPPRIS P1 TSL 1 (best) BASIC16.78■□□□□ 0.28
SSU72Q9NP77 PHACTR3-204ENST00000371015 2728 ntAPPRIS P1 TSL 1 (best) BASIC16.78■□□□□ 0.28
SSU72Q9NP77 DRG2-201ENST00000225729 1964 ntAPPRIS P1 TSL 1 (best) BASIC16.78■□□□□ 0.28
SSU72Q9NP77 KLK3-201ENST00000326003 1463 ntAPPRIS P1 TSL 1 (best) BASIC16.78■□□□□ 0.28
SSU72Q9NP77 MAPK8IP2-202ENST00000329492 3381 ntAPPRIS P1 TSL 1 (best) BASIC16.78■□□□□ 0.28
SSU72Q9NP77 CLDN14-204ENST00000399137 1942 ntAPPRIS P1 TSL 1 (best) BASIC16.78■□□□□ 0.28
SSU72Q9NP77 AC139530.2-201ENST00000571730 1922 ntAPPRIS P1 TSL 2 BASIC16.78■□□□□ 0.28
SSU72Q9NP77 SLC27A1-201ENST00000252595 3594 ntAPPRIS P1 TSL 1 (best) BASIC16.78■□□□□ 0.28
SSU72Q9NP77 BCAT2-209ENST00000599246 1449 ntTSL 1 (best) BASIC16.78■□□□□ 0.28
SSU72Q9NP77 H2BFM-201ENST00000355016 1882 ntAPPRIS P1 TSL 2 BASIC16.78■□□□□ 0.28
SSU72Q9NP77 FES-204ENST00000414248 2327 ntTSL 2 BASIC16.78■□□□□ 0.28
SSU72Q9NP77 PPHLN1-204ENST00000358314 1643 ntTSL 2 BASIC16.78■□□□□ 0.28
SSU72Q9NP77 APLN-201ENST00000429967 3205 ntAPPRIS P1 TSL 1 (best) BASIC16.77■□□□□ 0.28
SSU72Q9NP77 WDR88-202ENST00000361680 1835 ntAPPRIS ALT2 TSL 1 (best) BASIC16.77■□□□□ 0.28
SSU72Q9NP77 BCRP2-201ENST00000398241 1842 ntTSL 2 BASIC16.77■□□□□ 0.28
SSU72Q9NP77 ABCB10-201ENST00000344517 3857 ntAPPRIS P1 TSL 1 (best) BASIC16.77■□□□□ 0.28
SSU72Q9NP77 MBD4-203ENST00000429544 2478 ntAPPRIS ALT2 TSL 1 (best) BASIC16.77■□□□□ 0.28
SSU72Q9NP77 ZDHHC20-202ENST00000382466 5338 ntAPPRIS P3 TSL 1 (best) BASIC16.77■□□□□ 0.28
SSU72Q9NP77 SIT1-204ENST00000618781 1317 ntAPPRIS ALT2 TSL 5 BASIC16.77■□□□□ 0.28
SSU72Q9NP77 AC005906.2-217ENST00000639573 1711 ntTSL 5 BASIC16.77■□□□□ 0.28
SSU72Q9NP77 ANKS6-202ENST00000375019 2586 ntTSL 5 BASIC16.77■□□□□ 0.28
SSU72Q9NP77 CNOT3-204ENST00000447684 2765 ntTSL 2 BASIC16.77■□□□□ 0.28
SSU72Q9NP77 HAAO-201ENST00000294973 1265 ntAPPRIS P1 TSL 1 (best) BASIC16.77■□□□□ 0.28
SSU72Q9NP77 HES7-201ENST00000317814 678 ntAPPRIS P3 TSL 1 (best) BASIC16.77■□□□□ 0.28
SSU72Q9NP77 PRICKLE4-202ENST00000394260 1035 ntAPPRIS ALT2 TSL 2 BASIC16.77■□□□□ 0.28
SSU72Q9NP77 PRICKLE4-203ENST00000394263 1155 ntAPPRIS P2 TSL 5 BASIC16.77■□□□□ 0.28
SSU72Q9NP77 SPEG-204ENST00000396689 1274 ntTSL 1 (best) BASIC16.77■□□□□ 0.28
SSU72Q9NP77 AC113347.1-201ENST00000413321 391 ntBASIC16.77■□□□□ 0.28
SSU72Q9NP77 AC114763.1-202ENST00000414911 867 ntTSL 3 BASIC16.77■□□□□ 0.28
SSU72Q9NP77 AL020989.1-201ENST00000422979 469 ntBASIC16.77■□□□□ 0.28
SSU72Q9NP77 LINC02106-201ENST00000506534 606 ntTSL 2 BASIC16.77■□□□□ 0.28
SSU72Q9NP77 CAVIN3-203ENST00000530979 957 ntTSL 2 BASIC16.77■□□□□ 0.28
SSU72Q9NP77 LY6L-201ENST00000562505 988 ntAPPRIS P1 TSL 5 BASIC16.77■□□□□ 0.28
SSU72Q9NP77 YPEL3-207ENST00000566134 761 ntTSL 5 BASIC16.77■□□□□ 0.28
Retrieved 100 of 98,524 protein–RNA pairs in 51.8 ms