Protein–RNA interactions for Protein: P78317

RNF4, E3 ubiquitin-protein ligase RNF4, humanhuman

Predictions only

Length 190 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
RNF4P78317 LRRC3-201ENST00000291592 5869 ntAPPRIS P1 TSL 1 (best) BASIC15.66■□□□□ 0.1
RNF4P78317 SQSTM1-202ENST00000389805 2986 ntAPPRIS P1 TSL 1 (best) BASIC15.66■□□□□ 0.1
RNF4P78317 NYX-201ENST00000342595 2713 ntAPPRIS P1 TSL 1 (best) BASIC15.66■□□□□ 0.1
RNF4P78317 AC010186.2-201ENST00000575094 2612 ntTSL 2 BASIC15.65■□□□□ 0.1
RNF4P78317 WDR4-201ENST00000330317 1471 ntAPPRIS P1 TSL 1 (best) BASIC15.65■□□□□ 0.1
RNF4P78317 GSKIP-207ENST00000556095 3834 ntAPPRIS P1 TSL 2 BASIC15.65■□□□□ 0.1
RNF4P78317 NOL4L-205ENST00000375678 2042 ntAPPRIS ALT2 TSL 2 BASIC15.65■□□□□ 0.1
RNF4P78317 SMIM25-203ENST00000425497 2010 ntTSL 1 (best) BASIC15.65■□□□□ 0.1
RNF4P78317 CLDN6-201ENST00000328796 1369 ntAPPRIS P1 TSL 1 (best) BASIC15.65■□□□□ 0.1
RNF4P78317 SYCE1-203ENST00000368517 1377 ntAPPRIS P3 TSL 5 BASIC15.65■□□□□ 0.1
RNF4P78317 RAPGEFL1-212ENST00000620260 3855 ntAPPRIS P1 TSL 1 (best) BASIC15.65■□□□□ 0.1
RNF4P78317 LSP1-203ENST00000405957 1785 ntAPPRIS ALT2 TSL 5 BASIC15.65■□□□□ 0.1
RNF4P78317 LINC00094-205ENST00000603928 5722 ntAPPRIS ALT2 TSL 2 BASIC15.65■□□□□ 0.1
RNF4P78317 SLC34A2-202ENST00000503434 2174 ntAPPRIS ALT2 TSL 1 (best) BASIC15.65■□□□□ 0.1
RNF4P78317 TBX6-203ENST00000553607 2162 ntTSL 1 (best) BASIC15.65■□□□□ 0.1
RNF4P78317 PLEKHG6-203ENST00000396988 2963 ntAPPRIS P1 TSL 2 BASIC15.65■□□□□ 0.1
RNF4P78317 KIFC3-203ENST00000445690 3379 ntAPPRIS ALT2 TSL 1 (best) BASIC15.65■□□□□ 0.1
RNF4P78317 GSS-201ENST00000216951 1922 ntAPPRIS P1 TSL 1 (best) BASIC15.65■□□□□ 0.1
RNF4P78317 WT1-201ENST00000332351 3122 ntAPPRIS ALT2 TSL 1 (best) BASIC15.65■□□□□ 0.1
RNF4P78317 ALDH1A3-201ENST00000329841 3924 ntAPPRIS P1 TSL 1 (best) BASIC15.65■□□□□ 0.1
RNF4P78317 ZBTB47-202ENST00000505904 2456 ntTSL 5 BASIC15.65■□□□□ 0.1
RNF4P78317 PRR15-201ENST00000319694 1678 ntAPPRIS P1 TSL 1 (best) BASIC15.65■□□□□ 0.1
RNF4P78317 CGREF1-201ENST00000260595 1177 ntAPPRIS ALT2 TSL 5 BASIC15.65■□□□□ 0.1
RNF4P78317 TYROBP-201ENST00000262629 568 ntAPPRIS P3 TSL 1 (best) BASIC15.65■□□□□ 0.1
RNF4P78317 C22orf39-201ENST00000333059 1221 ntAPPRIS P1 TSL 1 (best) BASIC15.65■□□□□ 0.1
RNF4P78317 ADARB2-201ENST00000381305 703 ntTSL 2 BASIC15.65■□□□□ 0.1
RNF4P78317 YBX2P1-201ENST00000394192 760 ntBASIC15.65■□□□□ 0.1
RNF4P78317 DDT-204ENST00000404092 805 ntTSL 3 BASIC15.65■□□□□ 0.1
RNF4P78317 MCCD1P2-201ENST00000423228 335 ntBASIC15.65■□□□□ 0.1
RNF4P78317 AC074386.1-202ENST00000463561 864 ntBASIC15.65■□□□□ 0.1
RNF4P78317 AP005233.2-201ENST00000561588 372 ntTSL 3 BASIC15.65■□□□□ 0.1
RNF4P78317 MIR4515-201ENST00000584082 81 ntBASIC15.65■□□□□ 0.1
RNF4P78317 MED16-214ENST00000617672 554 ntTSL 5 BASIC15.65■□□□□ 0.1
RNF4P78317 LINC01635-202ENST00000635097 1023 ntTSL 5 BASIC15.65■□□□□ 0.1
RNF4P78317 AL645728.2-201ENST00000641974 660 ntBASIC15.65■□□□□ 0.1
RNF4P78317 CPZ-203ENST00000382480 2538 ntTSL 1 (best) BASIC15.65■□□□□ 0.1
RNF4P78317 KANSL1L-201ENST00000281772 4754 ntAPPRIS P1 TSL 5 BASIC15.65■□□□□ 0.1
RNF4P78317 AC004890.2-201ENST00000426347 2419 ntTSL 5 BASIC15.65■□□□□ 0.1
RNF4P78317 PRMT1-202ENST00000454376 1327 ntTSL 1 (best) BASIC15.65■□□□□ 0.1
RNF4P78317 B4GALT2-202ENST00000356836 2629 ntAPPRIS P1 TSL 2 BASIC15.64■□□□□ 0.1
RNF4P78317 ADRA1A-202ENST00000354550 1765 ntTSL 1 (best) BASIC15.64■□□□□ 0.1
RNF4P78317 HARS-203ENST00000431330 1774 ntTSL 2 BASIC15.64■□□□□ 0.1
RNF4P78317 IL12RB1-201ENST00000322153 1902 ntTSL 1 (best) BASIC15.64■□□□□ 0.09
RNF4P78317 CALD1-204ENST00000417172 1915 ntTSL 5 BASIC15.64■□□□□ 0.09
RNF4P78317 SIN3A-203ENST00000394949 4930 ntAPPRIS P1 TSL 1 (best) BASIC15.64■□□□□ 0.09
RNF4P78317 PGAP3-203ENST00000378011 2533 ntTSL 2 BASIC15.64■□□□□ 0.09
RNF4P78317 TUSC3-204ENST00000506802 1546 ntTSL 5 BASIC15.64■□□□□ 0.09
RNF4P78317 RETREG1-201ENST00000306320 3268 ntAPPRIS P1 TSL 1 (best) BASIC15.64■□□□□ 0.09
RNF4P78317 LARP4B-211ENST00000612396 8546 ntAPPRIS P1 TSL 5 BASIC15.64■□□□□ 0.09
RNF4P78317 SERPINA4-202ENST00000555095 1987 ntAPPRIS P1 TSL 1 (best) BASIC15.64■□□□□ 0.09
RNF4P78317 PPP1R16A-202ENST00000435887 2273 ntAPPRIS P1 TSL 1 (best) BASIC15.64■□□□□ 0.09
RNF4P78317 RUNX2-201ENST00000359524 5390 ntTSL 1 (best) BASIC15.64■□□□□ 0.09
RNF4P78317 PARP6-220ENST00000569795 2855 ntAPPRIS P1 TSL 5 BASIC15.64■□□□□ 0.09
RNF4P78317 PMS1-206ENST00000418224 3018 ntTSL 5 BASIC15.64■□□□□ 0.09
RNF4P78317 SLC12A2-208ENST00000628403 3617 ntAPPRIS ALT2 TSL 5 BASIC15.64■□□□□ 0.09
RNF4P78317 FBXO7-201ENST00000266087 2195 ntAPPRIS P1 TSL 1 (best) BASIC15.64■□□□□ 0.09
RNF4P78317 KCNIP2-208ENST00000370046 923 ntTSL 5 BASIC15.64■□□□□ 0.09
RNF4P78317 SELENOH-201ENST00000388857 833 ntAPPRIS P2 TSL 1 (best) BASIC15.64■□□□□ 0.09
RNF4P78317 KRT18P13-201ENST00000400056 1290 ntBASIC15.64■□□□□ 0.09
RNF4P78317 AIFM3-203ENST00000405089 2333 ntAPPRIS ALT1 TSL 2 BASIC15.64■□□□□ 0.09
RNF4P78317 GULP1-209ENST00000410051 1595 ntTSL 1 (best) BASIC15.64■□□□□ 0.09
RNF4P78317 RNF212-203ENST00000433731 1074 ntAPPRIS ALT2 TSL 1 (best) BASIC15.64■□□□□ 0.09
RNF4P78317 DNAJB3-201ENST00000446806 729 ntBASIC15.64■□□□□ 0.09
RNF4P78317 UCHL1-204ENST00000503431 917 ntAPPRIS P1 TSL 3 BASIC15.64■□□□□ 0.09
RNF4P78317 AC105202.1-202ENST00000522060 834 ntTSL 3 BASIC15.64■□□□□ 0.09
RNF4P78317 RPL28-209ENST00000560055 670 ntTSL 3 BASIC15.64■□□□□ 0.09
RNF4P78317 AL031432.2-201ENST00000566714 459 ntBASIC15.64■□□□□ 0.09
RNF4P78317 AC005606.1-201ENST00000567515 504 ntTSL 5 BASIC15.64■□□□□ 0.09
RNF4P78317 AL928711.1-201ENST00000570165 459 ntBASIC15.64■□□□□ 0.09
RNF4P78317 MPDU1-223ENST00000582151 728 ntBASIC15.64■□□□□ 0.09
RNF4P78317 STX10-207ENST00000589083 1241 ntTSL 1 (best) BASIC15.64■□□□□ 0.09
RNF4P78317 NFIC-210ENST00000590282 1558 ntTSL 2 BASIC15.64■□□□□ 0.09
RNF4P78317 AC097376.2-204ENST00000609359 627 ntTSL 2 BASIC15.64■□□□□ 0.09
RNF4P78317 TEX264-216ENST00000614067 1174 ntAPPRIS ALT2 TSL 3 BASIC15.64■□□□□ 0.09
RNF4P78317 STRADA-254ENST00000640999 2336 ntAPPRIS ALT1 TSL 5 BASIC15.64■□□□□ 0.09
RNF4P78317 SH2D3C-205ENST00000420366 2682 ntTSL 2 BASIC15.64■□□□□ 0.09
RNF4P78317 LRRC38-201ENST00000376085 2209 ntAPPRIS P1 TSL 1 (best) BASIC15.64■□□□□ 0.09
RNF4P78317 RAB3IP-207ENST00000483530 1755 ntTSL 1 (best) BASIC15.64■□□□□ 0.09
RNF4P78317 SH3BP4-202ENST00000392011 5194 ntAPPRIS P1 TSL 1 (best) BASIC15.64■□□□□ 0.09
RNF4P78317 AL121761.2-201ENST00000598007 1648 ntBASIC15.64■□□□□ 0.09
RNF4P78317 PDCD7-201ENST00000204549 2851 ntAPPRIS P2 TSL 1 (best) BASIC15.64■□□□□ 0.09
RNF4P78317 REM2-202ENST00000536884 1331 ntTSL 2 BASIC15.64■□□□□ 0.09
RNF4P78317 SCAI-202ENST00000373549 1968 ntTSL 1 (best) BASIC15.64■□□□□ 0.09
RNF4P78317 SPAG1-201ENST00000251809 3748 ntAPPRIS P1 TSL 5 BASIC15.64■□□□□ 0.09
RNF4P78317 BVES-202ENST00000336775 1663 ntAPPRIS P1 TSL 1 (best) BASIC15.63■□□□□ 0.09
RNF4P78317 PHF20L1-203ENST00000337920 2311 ntTSL 1 (best) BASIC15.63■□□□□ 0.09
RNF4P78317 CENPT-208ENST00000562787 2345 ntAPPRIS P2 TSL 2 BASIC15.63■□□□□ 0.09
RNF4P78317 AC012569.1-201ENST00000591191 1524 ntBASIC15.63■□□□□ 0.09
RNF4P78317 STX2-201ENST00000261653 3331 ntAPPRIS ALT1 TSL 1 (best) BASIC15.63■□□□□ 0.09
RNF4P78317 DCAF17-211ENST00000539783 5623 ntAPPRIS ALT2 TSL 5 BASIC15.63■□□□□ 0.09
RNF4P78317 ARHGAP26-202ENST00000378004 9200 ntAPPRIS ALT1 TSL 1 (best) BASIC15.63■□□□□ 0.09
RNF4P78317 TCEA1-201ENST00000396401 2718 ntTSL 1 (best) BASIC15.63■□□□□ 0.09
RNF4P78317 CHRNB2-201ENST00000368476 5867 ntAPPRIS P2 TSL 1 (best) BASIC15.63■□□□□ 0.09
RNF4P78317 ETV7-207ENST00000620358 1599 ntTSL 1 (best) BASIC15.63■□□□□ 0.09
RNF4P78317 DNM1-216ENST00000634267 2909 ntTSL 5 BASIC15.63■□□□□ 0.09
RNF4P78317 NF1-211ENST00000487476 2265 ntTSL 1 (best) BASIC15.63■□□□□ 0.09
RNF4P78317 EHD2-202ENST00000538399 1766 ntTSL 2 BASIC15.63■□□□□ 0.09
RNF4P78317 APLNR-203ENST00000611099 1789 ntAPPRIS P1 TSL 1 (best) BASIC15.63■□□□□ 0.09
RNF4P78317 NPB-201ENST00000333383 704 ntAPPRIS P2 TSL 1 (best) BASIC15.63■□□□□ 0.09
RNF4P78317 ASTL-201ENST00000342380 1296 ntAPPRIS P1 TSL 1 (best) BASIC15.63■□□□□ 0.09
Retrieved 100 of 98,524 protein–RNA pairs in 47.5 ms