Protein–RNA interactions for Protein: P55347

PKNOX1, Homeobox protein PKNOX1, humanhuman

Predictions only

Length 436 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
PKNOX1P55347 NUTF2-205ENST00000568396 1179 ntAPPRIS P1 TSL 3 BASIC16.66■□□□□ 0.26
PKNOX1P55347 KISS1R-203ENST00000606939 964 ntTSL 5 BASIC16.66■□□□□ 0.26
PKNOX1P55347 RIF1-204ENST00000430328 7992 ntAPPRIS ALT2 TSL 1 (best) BASIC16.66■□□□□ 0.26
PKNOX1P55347 TSPY26P-202ENST00000565928 3884 ntBASIC16.66■□□□□ 0.26
PKNOX1P55347 CCDC155-201ENST00000447857 2378 ntAPPRIS P2 TSL 1 (best) BASIC16.66■□□□□ 0.26
PKNOX1P55347 RMND5B-201ENST00000313386 1929 ntAPPRIS P1 TSL 1 (best) BASIC16.66■□□□□ 0.26
PKNOX1P55347 NFATC4-203ENST00000422617 5491 ntAPPRIS ALT2 TSL 1 (best) BASIC16.66■□□□□ 0.26
PKNOX1P55347 LINC00029-201ENST00000370341 1631 ntTSL 1 (best) BASIC16.66■□□□□ 0.26
PKNOX1P55347 MBNL1-201ENST00000282486 6422 ntAPPRIS P4 TSL 5 BASIC16.66■□□□□ 0.26
PKNOX1P55347 TUBB8P12-201ENST00000308911 1335 ntBASIC16.66■□□□□ 0.26
PKNOX1P55347 TUBB7P-202ENST00000428444 1305 ntBASIC16.66■□□□□ 0.26
PKNOX1P55347 TUBB8P7-204ENST00000567960 1332 ntBASIC16.66■□□□□ 0.26
PKNOX1P55347 CACNA2D3-201ENST00000288197 3671 ntAPPRIS ALT2 TSL 1 (best) BASIC16.66■□□□□ 0.26
PKNOX1P55347 CACNA2D3-206ENST00000474759 3675 ntAPPRIS P2 TSL 1 (best) BASIC16.66■□□□□ 0.26
PKNOX1P55347 ZNF767P-201ENST00000463567 3520 ntTSL 2 BASIC16.66■□□□□ 0.26
PKNOX1P55347 LTBP2-205ENST00000556690 5614 ntAPPRIS ALT2 TSL 5 BASIC16.66■□□□□ 0.26
PKNOX1P55347 CHEK1-202ENST00000427383 1670 ntTSL 1 (best) BASIC16.65■□□□□ 0.26
PKNOX1P55347 CDIPT-209ENST00000569956 1532 ntAPPRIS P1 TSL 5 BASIC16.65■□□□□ 0.26
PKNOX1P55347 TMED7-TICAM2-201ENST00000282382 3491 ntAPPRIS P1 TSL 2 BASIC16.65■□□□□ 0.26
PKNOX1P55347 ACTG1-208ENST00000575087 2001 ntAPPRIS P1 TSL 5 BASIC16.65■□□□□ 0.26
PKNOX1P55347 SCARB1-202ENST00000339570 3329 ntTSL 5 BASIC16.65■□□□□ 0.26
PKNOX1P55347 PKM-216ENST00000565184 2503 ntAPPRIS ALT1 TSL 1 (best) BASIC16.65■□□□□ 0.26
PKNOX1P55347 PTCH1-201ENST00000331920 8057 ntAPPRIS P1 TSL 5 BASIC16.65■□□□□ 0.26
PKNOX1P55347 SHANK1-204ENST00000391814 6622 ntAPPRIS ALT2 TSL 5 BASIC16.65■□□□□ 0.26
PKNOX1P55347 YTHDF3-212ENST00000621413 2370 ntTSL 5 BASIC16.65■□□□□ 0.26
PKNOX1P55347 QRFPR-202ENST00000394427 1708 ntAPPRIS P1 TSL 1 (best) BASIC16.65■□□□□ 0.26
PKNOX1P55347 ZSCAN2-214ENST00000546148 2242 ntAPPRIS P2 TSL 2 BASIC16.65■□□□□ 0.26
PKNOX1P55347 PML-215ENST00000565898 5393 ntAPPRIS ALT2 TSL 1 (best) BASIC16.65■□□□□ 0.26
PKNOX1P55347 ELN-221ENST00000445912 2583 ntAPPRIS ALT2 TSL 2 BASIC16.65■□□□□ 0.26
PKNOX1P55347 CARD14-202ENST00000570421 2607 ntTSL 1 (best) BASIC16.65■□□□□ 0.26
PKNOX1P55347 NT5E-202ENST00000369646 974 ntTSL 1 (best) BASIC16.65■□□□□ 0.26
PKNOX1P55347 RCN1P2-201ENST00000398357 915 ntBASIC16.65■□□□□ 0.26
PKNOX1P55347 ATP5J-203ENST00000400090 647 ntAPPRIS P1 TSL 2 BASIC16.65■□□□□ 0.26
PKNOX1P55347 POM121L3P-201ENST00000419331 1163 ntBASIC16.65■□□□□ 0.26
PKNOX1P55347 PCED1CP-201ENST00000419887 785 ntBASIC16.65■□□□□ 0.26
PKNOX1P55347 AL020989.1-201ENST00000422979 469 ntBASIC16.65■□□□□ 0.26
PKNOX1P55347 IGHV3-47-201ENST00000425060 335 ntBASIC16.65■□□□□ 0.26
PKNOX1P55347 COX18-204ENST00000507544 1086 ntAPPRIS ALT1 TSL 1 (best) BASIC16.65■□□□□ 0.26
PKNOX1P55347 AC008105.3-202ENST00000585471 1077 ntTSL 1 (best) BASIC16.65■□□□□ 0.26
PKNOX1P55347 AP002414.4-201ENST00000589764 1148 ntBASIC16.65■□□□□ 0.26
PKNOX1P55347 AC114341.1-201ENST00000618070 349 ntBASIC16.65■□□□□ 0.26
PKNOX1P55347 NFATC4-208ENST00000553708 5367 ntAPPRIS ALT2 TSL 1 (best) BASIC16.65■□□□□ 0.26
PKNOX1P55347 SGK3-206ENST00000520976 2483 ntTSL 2 BASIC16.65■□□□□ 0.26
PKNOX1P55347 MED25-202ENST00000538643 1623 ntTSL 1 (best) BASIC16.65■□□□□ 0.26
PKNOX1P55347 ADAMTS4-201ENST00000367995 1961 ntTSL 1 (best) BASIC16.65■□□□□ 0.26
PKNOX1P55347 AC092364.2-201ENST00000596710 2692 ntBASIC16.65■□□□□ 0.26
PKNOX1P55347 TNFSF14-202ENST00000599359 1476 ntAPPRIS P1 TSL 1 (best) BASIC16.65■□□□□ 0.26
PKNOX1P55347 ARHGEF4-205ENST00000409359 5489 ntTSL 5 BASIC16.65■□□□□ 0.26
PKNOX1P55347 MAN1C1-203ENST00000374332 4641 ntAPPRIS P1 TSL 1 (best) BASIC16.65■□□□□ 0.26
PKNOX1P55347 MAN1C1-208ENST00000611903 4647 ntTSL 5 BASIC16.65■□□□□ 0.26
PKNOX1P55347 ADAMTSL1-202ENST00000327883 1864 ntTSL 1 (best) BASIC16.65■□□□□ 0.26
PKNOX1P55347 PLXND1-201ENST00000324093 7094 ntAPPRIS P1 TSL 1 (best) BASIC16.65■□□□□ 0.26
PKNOX1P55347 LITAF-202ENST00000381810 1527 ntTSL 5 BASIC16.65■□□□□ 0.26
PKNOX1P55347 DBNL-213ENST00000452943 1513 ntTSL 2 BASIC16.65■□□□□ 0.26
PKNOX1P55347 PANX2-201ENST00000159647 2964 ntTSL 1 (best) BASIC16.65■□□□□ 0.26
PKNOX1P55347 DOLK-201ENST00000372586 2090 ntAPPRIS P1 BASIC16.65■□□□□ 0.26
PKNOX1P55347 AL132857.2-201ENST00000634305 1737 ntTSL 5 BASIC16.65■□□□□ 0.26
PKNOX1P55347 CNTLN-202ENST00000380647 5576 ntAPPRIS P3 TSL 1 (best) BASIC16.64■□□□□ 0.26
PKNOX1P55347 GTDC1-219ENST00000542155 2677 ntAPPRIS P1 TSL 2 BASIC16.64■□□□□ 0.26
PKNOX1P55347 MASTL-203ENST00000375946 3623 ntAPPRIS P3 TSL 1 (best) BASIC16.64■□□□□ 0.25
PKNOX1P55347 FAM189B-202ENST00000361361 3082 ntAPPRIS P1 TSL 1 (best) BASIC16.64■□□□□ 0.25
PKNOX1P55347 FAM184B-201ENST00000265018 6622 ntAPPRIS P1 TSL 1 (best) BASIC16.64■□□□□ 0.25
PKNOX1P55347 CYP2T1P-202ENST00000641596 2535 ntBASIC16.64■□□□□ 0.25
PKNOX1P55347 CCDC28B-202ENST00000421922 1415 ntTSL 1 (best) BASIC16.64■□□□□ 0.25
PKNOX1P55347 SEPT6-209ENST00000489216 1617 ntAPPRIS ALT1 TSL 1 (best) BASIC16.64■□□□□ 0.25
PKNOX1P55347 TNFRSF13C-201ENST00000291232 3944 ntAPPRIS P1 TSL 1 (best) BASIC16.64■□□□□ 0.25
PKNOX1P55347 AC006460.2-201ENST00000638173 4744 ntTSL 5 BASIC16.64■□□□□ 0.25
PKNOX1P55347 PLAGL1-211ENST00000625622 3216 ntAPPRIS P1 TSL 2 BASIC16.64■□□□□ 0.25
PKNOX1P55347 QRFP-201ENST00000343079 411 ntAPPRIS P1 BASIC16.64■□□□□ 0.25
PKNOX1P55347 PTGDS-202ENST00000371625 807 ntAPPRIS P1 TSL 1 (best) BASIC16.64■□□□□ 0.25
PKNOX1P55347 EEF1D-202ENST00000395119 1249 ntAPPRIS ALT2 TSL 1 (best) BASIC16.64■□□□□ 0.25
PKNOX1P55347 LINC00265-3P-201ENST00000447588 903 ntBASIC16.64■□□□□ 0.25
PKNOX1P55347 POLR2M-203ENST00000464277 910 ntTSL 1 (best) BASIC16.64■□□□□ 0.25
PKNOX1P55347 CSRP1-214ENST00000531916 890 ntTSL 5 BASIC16.64■□□□□ 0.25
PKNOX1P55347 AP000867.4-201ENST00000641616 219 ntBASIC16.64■□□□□ 0.25
PKNOX1P55347 COTL1-203ENST00000564057 1677 ntTSL 5 BASIC16.64■□□□□ 0.25
PKNOX1P55347 SCAF8-201ENST00000367178 5057 ntAPPRIS P1 TSL 2 BASIC16.64■□□□□ 0.25
PKNOX1P55347 CRY2-211ENST00000616080 1936 ntAPPRIS ALT2 TSL 1 (best) BASIC16.64■□□□□ 0.25
PKNOX1P55347 C11orf68-203ENST00000530188 1528 ntAPPRIS ALT2 BASIC16.64■□□□□ 0.25
PKNOX1P55347 TMUB2-213ENST00000589856 1505 ntTSL 2 BASIC16.64■□□□□ 0.25
PKNOX1P55347 HNRNPU-205ENST00000444376 6827 ntAPPRIS P3 TSL 1 (best) BASIC16.64■□□□□ 0.25
PKNOX1P55347 LINC00960-201ENST00000463183 1333 ntTSL 1 (best) BASIC16.64■□□□□ 0.25
PKNOX1P55347 UPK3B-202ENST00000334348 2373 ntAPPRIS ALT2 TSL 2 BASIC16.64■□□□□ 0.25
PKNOX1P55347 ZBTB46-201ENST00000245663 5185 ntAPPRIS P1 TSL 5 BASIC16.64■□□□□ 0.25
PKNOX1P55347 IER3-202ENST00000376377 1350 ntBASIC16.64■□□□□ 0.25
PKNOX1P55347 LRRC38-201ENST00000376085 2209 ntAPPRIS P1 TSL 1 (best) BASIC16.64■□□□□ 0.25
PKNOX1P55347 PPM1D-201ENST00000305921 4778 ntAPPRIS P1 TSL 1 (best) BASIC16.64■□□□□ 0.25
PKNOX1P55347 CBX8-201ENST00000269385 3791 ntAPPRIS P1 TSL 1 (best) BASIC16.63■□□□□ 0.25
PKNOX1P55347 TRIM24-202ENST00000415680 3799 ntAPPRIS ALT2 TSL 1 (best) BASIC16.63■□□□□ 0.25
PKNOX1P55347 UBQLN1-201ENST00000257468 2299 ntTSL 1 (best) BASIC16.63■□□□□ 0.25
PKNOX1P55347 ZBTB16-202ENST00000392996 2287 ntAPPRIS P1 TSL 1 (best) BASIC16.63■□□□□ 0.25
PKNOX1P55347 SLC25A45-202ENST00000398802 2286 ntAPPRIS P1 TSL 5 BASIC16.63■□□□□ 0.25
PKNOX1P55347 CYP2D6-203ENST00000360608 1684 ntAPPRIS P1 TSL 1 (best) BASIC16.63■□□□□ 0.25
PKNOX1P55347 PPP1R21-206ENST00000449090 3049 ntTSL 1 (best) BASIC16.63■□□□□ 0.25
PKNOX1P55347 MXI1-202ENST00000332674 3470 ntAPPRIS P4 TSL 1 (best) BASIC16.63■□□□□ 0.25
PKNOX1P55347 TTBK2-208ENST00000622375 6891 ntAPPRIS ALT2 TSL 1 (best) BASIC16.63■□□□□ 0.25
PKNOX1P55347 RHOT1-203ENST00000358365 3297 ntTSL 1 (best) BASIC16.63■□□□□ 0.25
PKNOX1P55347 AC092143.3-201ENST00000565150 1900 ntTSL 5 BASIC16.63■□□□□ 0.25
PKNOX1P55347 CCDC188-201ENST00000439765 1475 ntAPPRIS P1 TSL 5 BASIC16.63■□□□□ 0.25
PKNOX1P55347 PDZD8-201ENST00000334464 9699 ntAPPRIS P1 TSL 1 (best) BASIC16.63■□□□□ 0.25
Retrieved 100 of 98,524 protein–RNA pairs in 25.9 ms