Protein–RNA interactions for Protein: A0A539

TCRBV7S3A2, T-cell receptor beta variable 4-2 (Fragment), humanhuman

Predictions only

Length 114 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
TCRBV7S3A2A0A539 TIGAR-201ENST00000179259 2782 ntAPPRIS P1 TSL 1 (best) BASIC17.21■□□□□ 0.35
TCRBV7S3A2A0A539 AC132872.4-202ENST00000622924 2756 ntBASIC17.21■□□□□ 0.35
TCRBV7S3A2A0A539 TMEM25-202ENST00000354064 1965 ntTSL 2 BASIC17.21■□□□□ 0.35
TCRBV7S3A2A0A539 ME2P1-201ENST00000426028 1970 ntBASIC17.21■□□□□ 0.35
TCRBV7S3A2A0A539 SCRN2-202ENST00000407215 1779 ntTSL 1 (best) BASIC17.21■□□□□ 0.35
TCRBV7S3A2A0A539 NFIC-210ENST00000590282 1558 ntTSL 2 BASIC17.21■□□□□ 0.35
TCRBV7S3A2A0A539 LINC01972-201ENST00000422271 553 ntTSL 3 BASIC17.21■□□□□ 0.35
TCRBV7S3A2A0A539 MIR22HG-204ENST00000571595 767 ntTSL 5 BASIC17.21■□□□□ 0.35
TCRBV7S3A2A0A539 MTDHP3-201ENST00000594186 672 ntBASIC17.21■□□□□ 0.35
TCRBV7S3A2A0A539 CELF3-201ENST00000290583 3246 ntAPPRIS P3 TSL 1 (best) BASIC17.21■□□□□ 0.35
TCRBV7S3A2A0A539 CNGA3-205ENST00000436404 2504 ntAPPRIS ALT2 TSL 1 (best) BASIC17.21■□□□□ 0.35
TCRBV7S3A2A0A539 GUCA1A-203ENST00000394237 2233 ntAPPRIS P1 TSL 2 BASIC17.21■□□□□ 0.35
TCRBV7S3A2A0A539 CCZ1-207ENST00000628813 2218 ntTSL 2 BASIC17.21■□□□□ 0.35
TCRBV7S3A2A0A539 TMED7-TICAM2-201ENST00000282382 3491 ntAPPRIS P1 TSL 2 BASIC17.21■□□□□ 0.35
TCRBV7S3A2A0A539 EDA-203ENST00000374552 5278 ntAPPRIS P3 TSL 1 (best) BASIC17.21■□□□□ 0.35
TCRBV7S3A2A0A539 FBXO4-202ENST00000296812 1731 ntTSL 1 (best) BASIC17.21■□□□□ 0.35
TCRBV7S3A2A0A539 ARHGAP22-201ENST00000249601 2751 ntAPPRIS P3 TSL 1 (best) BASIC17.21■□□□□ 0.35
TCRBV7S3A2A0A539 HCG18-233ENST00000412685 2552 ntTSL 2 BASIC17.21■□□□□ 0.35
TCRBV7S3A2A0A539 FBXL16-202ENST00000397621 3547 ntAPPRIS P1 TSL 5 BASIC17.21■□□□□ 0.34
TCRBV7S3A2A0A539 TSPAN4-205ENST00000397406 1426 ntAPPRIS P1 TSL 1 (best) BASIC17.21■□□□□ 0.34
TCRBV7S3A2A0A539 NCF1C-201ENST00000438382 1427 ntBASIC17.21■□□□□ 0.34
TCRBV7S3A2A0A539 SLC29A1-202ENST00000371713 2168 ntAPPRIS P1 TSL 5 BASIC17.21■□□□□ 0.34
TCRBV7S3A2A0A539 AC005920.1-201ENST00000501718 2054 ntTSL 2 BASIC17.2■□□□□ 0.34
TCRBV7S3A2A0A539 GPR176-205ENST00000561100 2816 ntAPPRIS P1 TSL 1 (best) BASIC17.2■□□□□ 0.34
TCRBV7S3A2A0A539 EGLN2-207ENST00000593726 2821 ntAPPRIS P1 TSL 1 (best) BASIC17.2■□□□□ 0.34
TCRBV7S3A2A0A539 POLR3H-202ENST00000355209 4416 ntAPPRIS P1 TSL 1 (best) BASIC17.2■□□□□ 0.34
TCRBV7S3A2A0A539 RBPJ-204ENST00000348160 1752 ntAPPRIS ALT1 TSL 1 (best) BASIC17.2■□□□□ 0.34
TCRBV7S3A2A0A539 KRT35-202ENST00000393989 1670 ntAPPRIS P1 TSL 5 BASIC17.2■□□□□ 0.34
TCRBV7S3A2A0A539 CACNA2D2-201ENST00000266039 5476 ntAPPRIS ALT2 TSL 1 (best) BASIC17.2■□□□□ 0.34
TCRBV7S3A2A0A539 AL353608.3-201ENST00000603200 2211 ntTSL 5 BASIC17.2■□□□□ 0.34
TCRBV7S3A2A0A539 PBX3-207ENST00000447726 2789 ntTSL 1 (best) BASIC17.2■□□□□ 0.34
TCRBV7S3A2A0A539 PDCD1-201ENST00000334409 2114 ntAPPRIS P1 TSL 1 (best) BASIC17.2■□□□□ 0.34
TCRBV7S3A2A0A539 SCYL1-214ENST00000533862 2570 ntTSL 5 BASIC17.2■□□□□ 0.34
TCRBV7S3A2A0A539 DNM2-203ENST00000389253 3581 ntTSL 5 BASIC17.2■□□□□ 0.34
TCRBV7S3A2A0A539 DACH1-202ENST00000613252 5233 ntAPPRIS P2 TSL 1 (best) BASIC17.2■□□□□ 0.34
TCRBV7S3A2A0A539 AL356309.3-201ENST00000624132 1934 ntBASIC17.2■□□□□ 0.34
TCRBV7S3A2A0A539 C18orf63-201ENST00000579455 5127 ntAPPRIS P1 TSL 1 (best) BASIC17.2■□□□□ 0.34
TCRBV7S3A2A0A539 DYRK1B-205ENST00000597639 1806 ntTSL 5 BASIC17.2■□□□□ 0.34
TCRBV7S3A2A0A539 GOSR2-201ENST00000225567 1245 ntTSL 1 (best) BASIC17.2■□□□□ 0.34
TCRBV7S3A2A0A539 MCRIP2-201ENST00000307650 946 ntAPPRIS P1 TSL 1 (best) BASIC17.2■□□□□ 0.34
TCRBV7S3A2A0A539 TYMS-202ENST00000323250 693 ntTSL 1 (best) BASIC17.2■□□□□ 0.34
TCRBV7S3A2A0A539 CRELD2-202ENST00000403427 1242 ntTSL 1 (best) BASIC17.2■□□□□ 0.34
TCRBV7S3A2A0A539 RPL13P5-203ENST00000421824 845 ntTSL 3 BASIC17.2■□□□□ 0.34
TCRBV7S3A2A0A539 MTUS2-205ENST00000542829 1165 ntTSL 1 (best) BASIC17.2■□□□□ 0.34
TCRBV7S3A2A0A539 SART3-203ENST00000546611 1184 ntBASIC17.2■□□□□ 0.34
TCRBV7S3A2A0A539 HDDC3-205ENST00000559898 1024 ntTSL 1 (best) BASIC17.2■□□□□ 0.34
TCRBV7S3A2A0A539 TPM1-226ENST00000560959 925 ntTSL 2 BASIC17.2■□□□□ 0.34
TCRBV7S3A2A0A539 SLC39A13-201ENST00000354884 2289 ntAPPRIS P1 TSL 1 (best) BASIC17.2■□□□□ 0.34
TCRBV7S3A2A0A539 CCNC-209ENST00000520371 2186 ntTSL 5 BASIC17.2■□□□□ 0.34
TCRBV7S3A2A0A539 NEUROD1-201ENST00000295108 2852 ntAPPRIS P1 TSL 1 (best) BASIC17.2■□□□□ 0.34
TCRBV7S3A2A0A539 ZNF84-208ENST00000539354 3237 ntAPPRIS P2 TSL 1 (best) BASIC17.2■□□□□ 0.34
TCRBV7S3A2A0A539 DENND6B-201ENST00000413817 4939 ntAPPRIS P1 TSL 1 (best) BASIC17.2■□□□□ 0.34
TCRBV7S3A2A0A539 SCUBE2-207ENST00000520467 3148 ntAPPRIS P1 TSL 2 BASIC17.2■□□□□ 0.34
TCRBV7S3A2A0A539 FEZF1-AS1-202ENST00000428449 2653 ntTSL 2 BASIC17.2■□□□□ 0.34
TCRBV7S3A2A0A539 PPEF2-207ENST00000621010 1797 ntTSL 1 (best) BASIC17.2■□□□□ 0.34
TCRBV7S3A2A0A539 GABBR1-205ENST00000377034 4527 ntAPPRIS P1 TSL 1 (best) BASIC17.2■□□□□ 0.34
TCRBV7S3A2A0A539 YTHDF2-209ENST00000542507 2825 ntAPPRIS P1 TSL 5 BASIC17.2■□□□□ 0.34
TCRBV7S3A2A0A539 DDX42-208ENST00000578681 4337 ntAPPRIS P1 TSL 1 (best) BASIC17.2■□□□□ 0.34
TCRBV7S3A2A0A539 CPSF4-201ENST00000292476 1691 ntAPPRIS P3 TSL 1 (best) BASIC17.2■□□□□ 0.34
TCRBV7S3A2A0A539 CTSB-201ENST00000345125 2028 ntAPPRIS P1 TSL 5 BASIC17.2■□□□□ 0.34
TCRBV7S3A2A0A539 NFKBIA-201ENST00000216797 1558 ntAPPRIS P1 TSL 1 (best) BASIC17.19■□□□□ 0.34
TCRBV7S3A2A0A539 MAP4K4-202ENST00000324219 7526 ntTSL 5 BASIC17.19■□□□□ 0.34
TCRBV7S3A2A0A539 SLC37A4-217ENST00000545985 2606 ntAPPRIS P1 TSL 5 BASIC17.19■□□□□ 0.34
TCRBV7S3A2A0A539 BBS2-218ENST00000568104 2623 ntTSL 5 BASIC17.19■□□□□ 0.34
TCRBV7S3A2A0A539 BCRP2-201ENST00000398241 1842 ntTSL 2 BASIC17.19■□□□□ 0.34
TCRBV7S3A2A0A539 PSMC5-202ENST00000375812 1494 ntTSL 2 BASIC17.19■□□□□ 0.34
TCRBV7S3A2A0A539 ZBP1-202ENST00000395822 2073 ntTSL 2 BASIC17.19■□□□□ 0.34
TCRBV7S3A2A0A539 C7orf31-201ENST00000283905 2673 ntAPPRIS P1 TSL 1 (best) BASIC17.19■□□□□ 0.34
TCRBV7S3A2A0A539 AL671710.1-201ENST00000610245 2349 ntBASIC17.19■□□□□ 0.34
TCRBV7S3A2A0A539 DUSP8-202ENST00000397374 4480 ntAPPRIS P1 TSL 1 (best) BASIC17.19■□□□□ 0.34
TCRBV7S3A2A0A539 KRT23-201ENST00000209718 1987 ntAPPRIS P1 TSL 1 (best) BASIC17.19■□□□□ 0.34
TCRBV7S3A2A0A539 CACNA1A-227ENST00000636549 6792 ntAPPRIS ALT2 TSL 5 BASIC17.19■□□□□ 0.34
TCRBV7S3A2A0A539 KIF16B-203ENST00000408042 4640 ntTSL 1 (best) BASIC17.19■□□□□ 0.34
TCRBV7S3A2A0A539 PRMT2-208ENST00000451211 1878 ntTSL 1 (best) BASIC17.19■□□□□ 0.34
TCRBV7S3A2A0A539 KIAA1522-202ENST00000373480 5294 ntAPPRIS ALT2 TSL 1 (best) BASIC17.19■□□□□ 0.34
TCRBV7S3A2A0A539 KIAA1522-203ENST00000373481 5293 ntAPPRIS ALT2 TSL 2 BASIC17.19■□□□□ 0.34
TCRBV7S3A2A0A539 CCDC134-201ENST00000255784 1270 ntAPPRIS P1 TSL 1 (best) BASIC17.19■□□□□ 0.34
TCRBV7S3A2A0A539 BATF2-201ENST00000301887 2142 ntAPPRIS P1 TSL 1 (best) BASIC17.19■□□□□ 0.34
TCRBV7S3A2A0A539 OR10H5-201ENST00000308940 1132 ntAPPRIS P1 BASIC17.19■□□□□ 0.34
TCRBV7S3A2A0A539 UXT-202ENST00000335890 701 ntTSL 1 (best) BASIC17.19■□□□□ 0.34
TCRBV7S3A2A0A539 DHRS12-203ENST00000444610 1162 ntAPPRIS P1 TSL 1 (best) BASIC17.19■□□□□ 0.34
TCRBV7S3A2A0A539 HLA-J-202ENST00000469281 1241 ntBASIC17.19■□□□□ 0.34
TCRBV7S3A2A0A539 AC135776.2-201ENST00000567803 714 ntTSL 4 BASIC17.19■□□□□ 0.34
TCRBV7S3A2A0A539 LINC01956-202ENST00000584273 612 ntTSL 3 BASIC17.19■□□□□ 0.34
TCRBV7S3A2A0A539 AC002091.2-201ENST00000585297 402 ntTSL 2 BASIC17.19■□□□□ 0.34
TCRBV7S3A2A0A539 AC013467.2-201ENST00000605472 835 ntBASIC17.19■□□□□ 0.34
TCRBV7S3A2A0A539 AL139424.1-201ENST00000607572 797 ntBASIC17.19■□□□□ 0.34
TCRBV7S3A2A0A539 PTPN11-207ENST00000639857 801 ntTSL 5 BASIC17.19■□□□□ 0.34
TCRBV7S3A2A0A539 C1orf43-210ENST00000640799 1287 ntTSL 5 BASIC17.19■□□□□ 0.34
TCRBV7S3A2A0A539 SERTM1-201ENST00000315190 3207 ntAPPRIS P1 TSL 1 (best) BASIC17.19■□□□□ 0.34
TCRBV7S3A2A0A539 FBLN1-202ENST00000327858 2896 ntAPPRIS P1 TSL 1 (best) BASIC17.19■□□□□ 0.34
TCRBV7S3A2A0A539 SURF4-207ENST00000545297 2863 ntTSL 2 BASIC17.19■□□□□ 0.34
TCRBV7S3A2A0A539 ATP10A-201ENST00000356865 6680 ntAPPRIS P1 TSL 1 (best) BASIC17.19■□□□□ 0.34
TCRBV7S3A2A0A539 AL513523.2-202ENST00000427283 2040 ntBASIC17.19■□□□□ 0.34
TCRBV7S3A2A0A539 ZNF799-201ENST00000419318 3036 ntTSL 2 BASIC17.19■□□□□ 0.34
TCRBV7S3A2A0A539 CYBA-210ENST00000569359 1415 ntTSL 1 (best) BASIC17.19■□□□□ 0.34
TCRBV7S3A2A0A539 AATK-201ENST00000326724 5257 ntAPPRIS P3 TSL 5 BASIC17.19■□□□□ 0.34
TCRBV7S3A2A0A539 HTR3E-201ENST00000335304 1912 ntAPPRIS P3 TSL 1 (best) BASIC17.19■□□□□ 0.34
TCRBV7S3A2A0A539 PCM1-206ENST00000518537 2171 ntTSL 1 (best) BASIC17.19■□□□□ 0.34
TCRBV7S3A2A0A539 FAM53A-201ENST00000308132 2802 ntAPPRIS P1 TSL 2 BASIC17.19■□□□□ 0.34
Retrieved 100 of 98,524 protein–RNA pairs in 52.8 ms