Protein–RNA interactions for Protein: Q96PV0

SYNGAP1, Ras/Rap GTPase-activating protein SynGAP, humanhuman

Predictions only

Length 1,343 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SYNGAP1Q96PV0 TRAPPC6A-202ENST00000585934 758 ntAPPRIS P1 TSL 1 (best) BASIC19.19■□□□□ 0.66
SYNGAP1Q96PV0 GMFG-207ENST00000598034 1028 ntAPPRIS ALT1 TSL 1 (best) BASIC19.19■□□□□ 0.66
SYNGAP1Q96PV0 AC138649.4-201ENST00000612222 287 ntBASIC19.19■□□□□ 0.66
SYNGAP1Q96PV0 AC243571.2-201ENST00000615265 628 ntTSL 3 BASIC19.19■□□□□ 0.66
SYNGAP1Q96PV0 ARHGEF28-203ENST00000426542 6118 ntAPPRIS ALT2 TSL 1 (best) BASIC19.19■□□□□ 0.66
SYNGAP1Q96PV0 L1CAM-205ENST00000370060 5113 ntAPPRIS P4 TSL 5 BASIC19.19■□□□□ 0.66
SYNGAP1Q96PV0 NPAS3-202ENST00000356141 2802 ntAPPRIS ALT2 TSL 1 (best) BASIC19.19■□□□□ 0.66
SYNGAP1Q96PV0 RTKN2-203ENST00000395260 2076 ntTSL 1 (best) BASIC19.19■□□□□ 0.66
SYNGAP1Q96PV0 HMOX2-217ENST00000619528 1829 ntAPPRIS P1 TSL 5 BASIC19.19■□□□□ 0.66
SYNGAP1Q96PV0 CASKIN2-201ENST00000321617 5015 ntAPPRIS P1 TSL 1 (best) BASIC19.19■□□□□ 0.66
SYNGAP1Q96PV0 SUPT20H-202ENST00000356185 2681 ntAPPRIS P3 TSL 1 (best) BASIC19.19■□□□□ 0.66
SYNGAP1Q96PV0 EIF3C-211ENST00000566866 2986 ntAPPRIS P1 TSL 1 (best) BASIC19.18■□□□□ 0.66
SYNGAP1Q96PV0 ZNF589-203ENST00000427617 1677 ntTSL 2 BASIC19.18■□□□□ 0.66
SYNGAP1Q96PV0 FBXL5-202ENST00000412094 2837 ntAPPRIS ALT1 TSL 1 (best) BASIC19.18■□□□□ 0.66
SYNGAP1Q96PV0 CYP2W1-202ENST00000340150 2361 ntTSL 2 BASIC19.18■□□□□ 0.66
SYNGAP1Q96PV0 FN1-208ENST00000426059 2388 ntTSL 1 (best) BASIC19.18■□□□□ 0.66
SYNGAP1Q96PV0 IFFO1-201ENST00000336604 2686 ntAPPRIS P3 TSL 1 (best) BASIC19.18■□□□□ 0.66
SYNGAP1Q96PV0 PDE1C-206ENST00000396193 5109 ntAPPRIS P4 TSL 2 BASIC19.18■□□□□ 0.66
SYNGAP1Q96PV0 SEL1L3-202ENST00000399878 4520 ntAPPRIS P1 TSL 1 (best) BASIC19.18■□□□□ 0.66
SYNGAP1Q96PV0 RAB40C-203ENST00000535977 2717 ntAPPRIS P1 TSL 5 BASIC19.18■□□□□ 0.66
SYNGAP1Q96PV0 SPRED2-206ENST00000443619 1800 ntAPPRIS P1 TSL 2 BASIC19.18■□□□□ 0.66
SYNGAP1Q96PV0 CABP5-201ENST00000293255 1257 ntAPPRIS P1 TSL 1 (best) BASIC19.18■□□□□ 0.66
SYNGAP1Q96PV0 MRPL43-201ENST00000299179 747 ntTSL 1 (best) BASIC19.18■□□□□ 0.66
SYNGAP1Q96PV0 CCDC107-201ENST00000327351 804 ntAPPRIS ALT2 TSL 1 (best) BASIC19.18■□□□□ 0.66
SYNGAP1Q96PV0 HDAC8-202ENST00000373556 704 ntTSL 2 BASIC19.18■□□□□ 0.66
SYNGAP1Q96PV0 NME1-NME2-202ENST00000393193 1021 ntAPPRIS P2 TSL 2 BASIC19.18■□□□□ 0.66
SYNGAP1Q96PV0 ITGB2-204ENST00000397846 422 ntTSL 2 BASIC19.18■□□□□ 0.66
SYNGAP1Q96PV0 FAM221A-202ENST00000409192 888 ntTSL 1 (best) BASIC19.18■□□□□ 0.66
SYNGAP1Q96PV0 SPDYE2-202ENST00000432940 1209 ntAPPRIS P2 TSL 1 (best) BASIC19.18■□□□□ 0.66
SYNGAP1Q96PV0 SPDYE2B-201ENST00000436228 1209 ntAPPRIS P2 TSL 1 (best) BASIC19.18■□□□□ 0.66
SYNGAP1Q96PV0 RBPMS2P1-201ENST00000437762 623 ntBASIC19.18■□□□□ 0.66
SYNGAP1Q96PV0 NAGK-205ENST00000443938 1221 ntAPPRIS ALT1 TSL 5 BASIC19.18■□□□□ 0.66
SYNGAP1Q96PV0 TM4SF19-204ENST00000454715 1061 ntTSL 1 (best) BASIC19.18■□□□□ 0.66
SYNGAP1Q96PV0 SPDYE5-201ENST00000455862 1209 ntAPPRIS P2 TSL 1 (best) BASIC19.18■□□□□ 0.66
SYNGAP1Q96PV0 HILS1-201ENST00000504307 1219 ntTSL 1 (best) BASIC19.18■□□□□ 0.66
SYNGAP1Q96PV0 AC009053.3-201ENST00000567148 574 ntTSL 4 BASIC19.18■□□□□ 0.66
SYNGAP1Q96PV0 AC013565.3-202ENST00000570120 460 ntTSL 2 BASIC19.18■□□□□ 0.66
SYNGAP1Q96PV0 TMEM88-202ENST00000574668 510 ntTSL 2 BASIC19.18■□□□□ 0.66
SYNGAP1Q96PV0 IL11-202ENST00000585513 1201 ntAPPRIS P1 TSL 1 (best) BASIC19.18■□□□□ 0.66
SYNGAP1Q96PV0 AC011491.2-201ENST00000599584 447 ntTSL 5 BASIC19.18■□□□□ 0.66
SYNGAP1Q96PV0 JPT1-209ENST00000482348 1614 ntTSL 1 (best) BASIC19.18■□□□□ 0.66
SYNGAP1Q96PV0 CDH22-203ENST00000537909 3902 ntAPPRIS P1 TSL 2 BASIC19.18■□□□□ 0.66
SYNGAP1Q96PV0 ARFGAP2-229ENST00000627920 2613 ntTSL 2 BASIC19.18■□□□□ 0.66
SYNGAP1Q96PV0 PRR15-201ENST00000319694 1678 ntAPPRIS P1 TSL 1 (best) BASIC19.18■□□□□ 0.66
SYNGAP1Q96PV0 P2RY6-202ENST00000393590 2398 ntAPPRIS P1 TSL 1 (best) BASIC19.18■□□□□ 0.66
SYNGAP1Q96PV0 PLA2R1-202ENST00000392771 5160 ntAPPRIS ALT2 TSL 1 (best) BASIC19.18■□□□□ 0.66
SYNGAP1Q96PV0 SDHA-213ENST00000510361 2148 ntTSL 2 BASIC19.17■□□□□ 0.66
SYNGAP1Q96PV0 EIF3J-201ENST00000261868 2569 ntAPPRIS P1 TSL 1 (best) BASIC19.17■□□□□ 0.66
SYNGAP1Q96PV0 LINC02167-203ENST00000566900 1489 ntTSL 2 BASIC19.17■□□□□ 0.66
SYNGAP1Q96PV0 ELL2-201ENST00000237853 6046 ntAPPRIS P1 TSL 1 (best) BASIC19.17■□□□□ 0.66
SYNGAP1Q96PV0 POLR1D-221ENST00000637180 2262 ntTSL 5 BASIC19.17■□□□□ 0.66
SYNGAP1Q96PV0 AC005498.3-201ENST00000596587 2045 ntTSL 1 (best) BASIC19.17■□□□□ 0.66
SYNGAP1Q96PV0 DTX2-202ENST00000413936 2472 ntAPPRIS P3 TSL 1 (best) BASIC19.17■□□□□ 0.66
SYNGAP1Q96PV0 APP-202ENST00000348990 3355 ntTSL 1 (best) BASIC19.17■□□□□ 0.66
SYNGAP1Q96PV0 VMA21-202ENST00000370361 693 ntTSL 5 BASIC19.17■□□□□ 0.66
SYNGAP1Q96PV0 RBM43-202ENST00000409092 579 ntAPPRIS ALT2 TSL 2 BASIC19.17■□□□□ 0.66
SYNGAP1Q96PV0 BASP1P1-201ENST00000430708 665 ntBASIC19.17■□□□□ 0.66
SYNGAP1Q96PV0 AL732437.1-201ENST00000442008 595 ntTSL 4 BASIC19.17■□□□□ 0.66
SYNGAP1Q96PV0 NR2C2AP-204ENST00000538165 891 ntTSL 2 BASIC19.17■□□□□ 0.66
SYNGAP1Q96PV0 KRT16P2-202ENST00000579062 563 ntTSL 4 BASIC19.17■□□□□ 0.66
SYNGAP1Q96PV0 AC016168.1-201ENST00000591422 722 ntTSL 3 BASIC19.17■□□□□ 0.66
SYNGAP1Q96PV0 IRF1-211ENST00000613424 821 ntTSL 1 (best) BASIC19.17■□□□□ 0.66
SYNGAP1Q96PV0 CBR3-AS1-216ENST00000624883 564 ntTSL 3 BASIC19.17■□□□□ 0.66
SYNGAP1Q96PV0 CFAP77-201ENST00000343036 1818 ntAPPRIS P3 TSL 2 BASIC19.17■□□□□ 0.66
SYNGAP1Q96PV0 NDUFV1-216ENST00000529927 1503 ntAPPRIS ALT1 TSL 1 (best) BASIC19.16■□□□□ 0.66
SYNGAP1Q96PV0 GAB1-201ENST00000262994 2648 ntAPPRIS ALT1 TSL 1 (best) BASIC19.16■□□□□ 0.66
SYNGAP1Q96PV0 AL138688.1-201ENST00000624851 1594 ntBASIC19.16■□□□□ 0.66
SYNGAP1Q96PV0 ZNF746-202ENST00000458143 3797 ntAPPRIS ALT2 TSL 2 BASIC19.16■□□□□ 0.66
SYNGAP1Q96PV0 ARNTL-205ENST00000403510 2745 ntTSL 2 BASIC19.16■□□□□ 0.66
SYNGAP1Q96PV0 TMEM45B-201ENST00000281441 2234 ntAPPRIS P1 TSL 2 BASIC19.16■□□□□ 0.66
SYNGAP1Q96PV0 PCGF6-202ENST00000369847 2230 ntAPPRIS P1 TSL 1 (best) BASIC19.16■□□□□ 0.66
SYNGAP1Q96PV0 SLC22A18AS-203ENST00000625099 1659 ntAPPRIS ALT2 TSL 1 (best) BASIC19.16■□□□□ 0.66
SYNGAP1Q96PV0 TDRP-201ENST00000324079 3395 ntAPPRIS P1 TSL 1 (best) BASIC19.16■□□□□ 0.66
SYNGAP1Q96PV0 CLSTN1-202ENST00000377298 5221 ntAPPRIS ALT2 TSL 1 (best) BASIC19.16■□□□□ 0.66
SYNGAP1Q96PV0 EPHX1-206ENST00000614058 1789 ntAPPRIS P1 TSL 1 (best) BASIC19.16■□□□□ 0.66
SYNGAP1Q96PV0 RNF166-203ENST00000541206 2419 ntTSL 2 BASIC19.16■□□□□ 0.66
SYNGAP1Q96PV0 C17orf62-202ENST00000342572 1849 ntTSL 2 BASIC19.16■□□□□ 0.66
SYNGAP1Q96PV0 PRDM8-203ENST00000504452 3706 ntAPPRIS P1 TSL 5 BASIC19.16■□□□□ 0.66
SYNGAP1Q96PV0 PHF20L1-209ENST00000395386 6237 ntAPPRIS P1 TSL 5 BASIC19.16■□□□□ 0.66
SYNGAP1Q96PV0 KLK8-202ENST00000320838 456 ntTSL 5 BASIC19.16■□□□□ 0.66
SYNGAP1Q96PV0 IFT20-202ENST00000357896 974 ntTSL 1 (best) BASIC19.16■□□□□ 0.66
SYNGAP1Q96PV0 MECP2-203ENST00000407218 1174 ntTSL 5 BASIC19.16■□□□□ 0.66
SYNGAP1Q96PV0 AC107890.1-201ENST00000422478 521 ntBASIC19.16■□□□□ 0.66
SYNGAP1Q96PV0 AL513327.2-201ENST00000432703 490 ntTSL 2 BASIC19.16■□□□□ 0.66
SYNGAP1Q96PV0 INGX-202ENST00000489074 768 ntBASIC19.16■□□□□ 0.66
SYNGAP1Q96PV0 RPS3A-212ENST00000514682 985 ntTSL 5 BASIC19.16■□□□□ 0.66
SYNGAP1Q96PV0 AL583722.3-202ENST00000554954 486 ntTSL 4 BASIC19.16■□□□□ 0.66
SYNGAP1Q96PV0 MIR3909-201ENST00000579518 119 ntBASIC19.16■□□□□ 0.66
SYNGAP1Q96PV0 SNHG8-201ENST00000602414 672 ntTSL 1 (best) BASIC19.16■□□□□ 0.66
SYNGAP1Q96PV0 SNHG8-205ENST00000602819 470 ntTSL 2 BASIC19.16■□□□□ 0.66
SYNGAP1Q96PV0 RAB34-224ENST00000636513 888 ntTSL 5 BASIC19.16■□□□□ 0.66
SYNGAP1Q96PV0 TMEM143-202ENST00000377431 1960 ntTSL 1 (best) BASIC19.16■□□□□ 0.66
SYNGAP1Q96PV0 ZDHHC19-201ENST00000296326 1306 ntAPPRIS P1 TSL 5 BASIC19.16■□□□□ 0.66
SYNGAP1Q96PV0 ZNF274-202ENST00000345813 2678 ntAPPRIS ALT2 TSL 1 (best) BASIC19.16■□□□□ 0.66
SYNGAP1Q96PV0 LILRA6-201ENST00000245621 1395 ntAPPRIS ALT2 TSL 5 BASIC19.16■□□□□ 0.66
SYNGAP1Q96PV0 ACP5-203ENST00000433365 1397 ntAPPRIS P1 TSL 1 (best) BASIC19.16■□□□□ 0.66
SYNGAP1Q96PV0 WDR74-206ENST00000529106 1366 ntAPPRIS P1 TSL 2 BASIC19.16■□□□□ 0.66
SYNGAP1Q96PV0 ISLR2-201ENST00000361742 4817 ntAPPRIS P1 TSL 1 (best) BASIC19.16■□□□□ 0.66
SYNGAP1Q96PV0 PPM1M-202ENST00000323588 2193 ntAPPRIS P1 TSL 1 (best) BASIC19.16■□□□□ 0.66
SYNGAP1Q96PV0 CAMKV-204ENST00000466940 1475 ntTSL 2 BASIC19.16■□□□□ 0.66
Retrieved 100 of 98,524 protein–RNA pairs in 47.3 ms