Protein–RNA interactions for Protein: Q96A23

CPNE4, Copine-4, humanhuman

Predicted RBP Predictions only

Length 557 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CPNE4Q96A23 STX2-201ENST00000261653 3331 ntAPPRIS ALT1 TSL 1 (best) BASIC15.22■□□□□ 0.03
CPNE4Q96A23 FBXL5-202ENST00000412094 2837 ntAPPRIS ALT1 TSL 1 (best) BASIC15.22■□□□□ 0.03
CPNE4Q96A23 SYT3-202ENST00000593901 2836 ntAPPRIS P1 TSL 1 (best) BASIC15.22■□□□□ 0.03
CPNE4Q96A23 WRAP53-203ENST00000431639 1818 ntAPPRIS P1 TSL 1 (best) BASIC15.22■□□□□ 0.03
CPNE4Q96A23 WRAP53-204ENST00000457584 1828 ntAPPRIS P1 TSL 1 (best) BASIC15.22■□□□□ 0.03
CPNE4Q96A23 HMGCLL1-202ENST00000308161 1314 ntTSL 2 BASIC15.22■□□□□ 0.03
CPNE4Q96A23 KIF25-201ENST00000351261 1326 ntTSL 5 BASIC15.22■□□□□ 0.03
CPNE4Q96A23 DTX2-202ENST00000413936 2472 ntAPPRIS P3 TSL 1 (best) BASIC15.22■□□□□ 0.03
CPNE4Q96A23 CEP83-AS1-201ENST00000623122 2482 ntBASIC15.22■□□□□ 0.03
CPNE4Q96A23 LIFR-202ENST00000453190 4253 ntAPPRIS P1 TSL 2 BASIC15.22■□□□□ 0.03
CPNE4Q96A23 NFATC4-202ENST00000413692 5700 ntAPPRIS ALT2 TSL 1 (best) BASIC15.22■□□□□ 0.03
CPNE4Q96A23 CPEB2-AS1-201ENST00000500394 1630 ntTSL 1 (best) BASIC15.22■□□□□ 0.03
CPNE4Q96A23 LEF1-201ENST00000265165 3068 ntAPPRIS P3 TSL 1 (best) BASIC15.22■□□□□ 0.03
CPNE4Q96A23 MCM9-201ENST00000316068 2442 ntTSL 1 (best) BASIC15.22■□□□□ 0.03
CPNE4Q96A23 KCNJ2-AS1-201ENST00000590966 2442 ntBASIC15.22■□□□□ 0.03
CPNE4Q96A23 LINC01148-201ENST00000557527 1763 ntTSL 1 (best) BASIC15.22■□□□□ 0.03
CPNE4Q96A23 ELF2-204ENST00000394235 4012 ntAPPRIS P1 TSL 5 BASIC15.22■□□□□ 0.03
CPNE4Q96A23 SHOX-204ENST00000554971 1902 ntAPPRIS P1 TSL 1 (best) BASIC15.22■□□□□ 0.03
CPNE4Q96A23 AL590627.1-201ENST00000626603 1910 ntTSL 2 BASIC15.22■□□□□ 0.03
CPNE4Q96A23 PF4-201ENST00000296029 604 ntAPPRIS P1 TSL 1 (best) BASIC15.22■□□□□ 0.03
CPNE4Q96A23 CST3-201ENST00000376925 873 ntAPPRIS P1 TSL 1 (best) BASIC15.22■□□□□ 0.03
CPNE4Q96A23 WWOX-204ENST00000408984 1227 ntTSL 1 (best) BASIC15.22■□□□□ 0.03
CPNE4Q96A23 AL049612.1-201ENST00000427017 694 ntTSL 5 BASIC15.22■□□□□ 0.03
CPNE4Q96A23 HYAL1-206ENST00000447605 666 ntTSL 1 (best) BASIC15.22■□□□□ 0.03
CPNE4Q96A23 L2HGDH-205ENST00000555423 841 ntTSL 1 (best) BASIC15.22■□□□□ 0.03
CPNE4Q96A23 OR7E47P-204ENST00000575924 449 ntBASIC15.22■□□□□ 0.03
CPNE4Q96A23 ANAPC13-206ENST00000514612 1420 ntAPPRIS P1 TSL 2 BASIC15.22■□□□□ 0.03
CPNE4Q96A23 CBX3P2-201ENST00000579647 1429 ntTSL 2 BASIC15.22■□□□□ 0.03
CPNE4Q96A23 ADO-201ENST00000373783 3627 ntAPPRIS P1 BASIC15.22■□□□□ 0.03
CPNE4Q96A23 ARNTL2-208ENST00000544915 6785 ntAPPRIS ALT2 TSL 5 BASIC15.22■□□□□ 0.03
CPNE4Q96A23 LMNA-202ENST00000361308 1713 ntTSL 5 BASIC15.22■□□□□ 0.03
CPNE4Q96A23 STPG3-AS1-201ENST00000612170 1701 ntTSL 2 BASIC15.22■□□□□ 0.03
CPNE4Q96A23 INSIG1-203ENST00000344756 2623 ntTSL 5 BASIC15.22■□□□□ 0.03
CPNE4Q96A23 HSF2-202ENST00000452194 2643 ntAPPRIS ALT2 TSL 1 (best) BASIC15.22■□□□□ 0.03
CPNE4Q96A23 DMPK-201ENST00000291270 2787 ntAPPRIS P3 TSL 5 BASIC15.22■□□□□ 0.03
CPNE4Q96A23 ADCY1-202ENST00000432715 1693 ntTSL 2 BASIC15.22■□□□□ 0.03
CPNE4Q96A23 CFAP77-201ENST00000343036 1818 ntAPPRIS P3 TSL 2 BASIC15.22■□□□□ 0.03
CPNE4Q96A23 BANP-227ENST00000626016 2144 ntTSL 2 BASIC15.22■□□□□ 0.03
CPNE4Q96A23 TNIP1-211ENST00000521591 2274 ntAPPRIS P3 TSL 1 (best) BASIC15.22■□□□□ 0.03
CPNE4Q96A23 XRCC3-201ENST00000352127 2563 ntAPPRIS P1 TSL 1 (best) BASIC15.22■□□□□ 0.03
CPNE4Q96A23 KCNE3-201ENST00000310128 3143 ntAPPRIS P1 TSL 1 (best) BASIC15.21■□□□□ 0.03
CPNE4Q96A23 NPTN-202ENST00000351217 2817 ntTSL 1 (best) BASIC15.21■□□□□ 0.03
CPNE4Q96A23 DRC7-201ENST00000336825 2680 ntAPPRIS ALT2 TSL 2 BASIC15.21■□□□□ 0.03
CPNE4Q96A23 ILVBL-209ENST00000534378 2067 ntTSL 5 BASIC15.21■□□□□ 0.03
CPNE4Q96A23 AL645608.8-201ENST00000606034 2086 ntBASIC15.21■□□□□ 0.03
CPNE4Q96A23 DPEP1-203ENST00000421184 1647 ntAPPRIS P1 TSL 5 BASIC15.21■□□□□ 0.03
CPNE4Q96A23 FOS-208ENST00000555686 1496 ntTSL 2 BASIC15.21■□□□□ 0.03
CPNE4Q96A23 TUBB8P12-201ENST00000308911 1335 ntBASIC15.21■□□□□ 0.03
CPNE4Q96A23 TUBB7P-202ENST00000428444 1305 ntBASIC15.21■□□□□ 0.03
CPNE4Q96A23 TUBB8P7-204ENST00000567960 1332 ntBASIC15.21■□□□□ 0.03
CPNE4Q96A23 HSP90B1-210ENST00000614327 1338 ntTSL 1 (best) BASIC15.21■□□□□ 0.03
CPNE4Q96A23 NSMCE3-201ENST00000332303 4838 ntAPPRIS P1 BASIC15.21■□□□□ 0.03
CPNE4Q96A23 PIGW-204ENST00000614443 2312 ntAPPRIS P1 TSL 1 (best) BASIC15.21■□□□□ 0.03
CPNE4Q96A23 LSP1-217ENST00000612798 1881 ntAPPRIS ALT2 TSL 2 BASIC15.21■□□□□ 0.03
CPNE4Q96A23 PIGT-257ENST00000640210 1715 ntTSL 5 BASIC15.21■□□□□ 0.03
CPNE4Q96A23 KDM4B-211ENST00000611640 5703 ntTSL 5 BASIC15.21■□□□□ 0.03
CPNE4Q96A23 NDUFA3-201ENST00000303553 379 ntTSL 2 BASIC15.21■□□□□ 0.03
CPNE4Q96A23 CCDC107-201ENST00000327351 804 ntAPPRIS ALT2 TSL 1 (best) BASIC15.21■□□□□ 0.03
CPNE4Q96A23 MYL6-202ENST00000348108 722 ntAPPRIS ALT1 TSL 3 BASIC15.21■□□□□ 0.03
CPNE4Q96A23 OTOS-202ENST00000391989 645 ntAPPRIS P1 TSL 3 BASIC15.21■□□□□ 0.03
CPNE4Q96A23 BX276092.7-202ENST00000422194 696 ntTSL 3 BASIC15.21■□□□□ 0.03
CPNE4Q96A23 Z97056.1-201ENST00000433230 556 ntTSL 2 BASIC15.21■□□□□ 0.03
CPNE4Q96A23 AL121672.1-201ENST00000439423 1181 ntTSL 1 (best) BASIC15.21■□□□□ 0.03
CPNE4Q96A23 AC012363.1-201ENST00000455707 575 ntTSL 4 BASIC15.21■□□□□ 0.03
CPNE4Q96A23 BX890604.1-208ENST00000490920 726 ntTSL 2 BASIC15.21■□□□□ 0.03
CPNE4Q96A23 CDKN2A-209ENST00000498628 926 ntTSL 2 BASIC15.21■□□□□ 0.03
CPNE4Q96A23 CXCL1P1-201ENST00000502804 216 ntBASIC15.21■□□□□ 0.03
CPNE4Q96A23 MOK-203ENST00000517966 1230 ntTSL 1 (best) BASIC15.21■□□□□ 0.03
CPNE4Q96A23 AC025162.1-201ENST00000554022 565 ntTSL 4 BASIC15.21■□□□□ 0.03
CPNE4Q96A23 LRRC28-210ENST00000558879 581 ntTSL 4 BASIC15.21■□□□□ 0.03
CPNE4Q96A23 TXNL4A-201ENST00000269601 3504 ntAPPRIS P1 TSL 1 (best) BASIC15.21■□□□□ 0.03
CPNE4Q96A23 PGAP3-203ENST00000378011 2533 ntTSL 2 BASIC15.21■□□□□ 0.03
CPNE4Q96A23 CCNYL1-201ENST00000295414 3767 ntTSL 5 BASIC15.21■□□□□ 0.03
CPNE4Q96A23 ZNF281-203ENST00000367353 3080 ntAPPRIS P3 TSL 1 (best) BASIC15.21■□□□□ 0.03
CPNE4Q96A23 DMRTC2-204ENST00000596827 1675 ntTSL 2 BASIC15.21■□□□□ 0.03
CPNE4Q96A23 RABGGTA-201ENST00000216840 2088 ntAPPRIS P1 TSL 1 (best) BASIC15.21■□□□□ 0.03
CPNE4Q96A23 SYT6-205ENST00000609117 4424 ntTSL 5 BASIC15.21■□□□□ 0.03
CPNE4Q96A23 TMEM155-202ENST00000394394 1753 ntAPPRIS P2 TSL 3 BASIC15.21■□□□□ 0.02
CPNE4Q96A23 DPEP3-201ENST00000268793 2018 ntAPPRIS P1 TSL 1 (best) BASIC15.21■□□□□ 0.02
CPNE4Q96A23 LOXL3-205ENST00000409986 2005 ntTSL 2 BASIC15.21■□□□□ 0.02
CPNE4Q96A23 BCAR1-201ENST00000162330 3221 ntAPPRIS P3 TSL 1 (best) BASIC15.21■□□□□ 0.02
CPNE4Q96A23 CSNK2A1-203ENST00000400217 1451 ntTSL 2 BASIC15.2■□□□□ 0.02
CPNE4Q96A23 KLHL33-201ENST00000344581 1863 ntTSL 5 BASIC15.2■□□□□ 0.02
CPNE4Q96A23 PDCD1-201ENST00000334409 2114 ntAPPRIS P1 TSL 1 (best) BASIC15.2■□□□□ 0.02
CPNE4Q96A23 ADM5-201ENST00000420022 1718 ntAPPRIS P1 TSL 1 (best) BASIC15.2■□□□□ 0.02
CPNE4Q96A23 CTSB-232ENST00000534510 1989 ntAPPRIS P1 TSL 5 BASIC15.2■□□□□ 0.02
CPNE4Q96A23 DKK3-201ENST00000326932 2636 ntAPPRIS P1 TSL 1 (best) BASIC15.2■□□□□ 0.02
CPNE4Q96A23 TNIP1-221ENST00000610874 2629 ntTSL 5 BASIC15.2■□□□□ 0.02
CPNE4Q96A23 B3GNT3-201ENST00000318683 2226 ntAPPRIS P1 TSL 1 (best) BASIC15.2■□□□□ 0.02
CPNE4Q96A23 PCDHA6-202ENST00000527624 2231 ntTSL 1 (best) BASIC15.2■□□□□ 0.02
CPNE4Q96A23 HSPA8-224ENST00000534624 2463 ntAPPRIS P1 TSL 1 (best) BASIC15.2■□□□□ 0.02
CPNE4Q96A23 FGFR4-203ENST00000393648 2733 ntAPPRIS ALT2 TSL 2 BASIC15.2■□□□□ 0.02
CPNE4Q96A23 GYPC-202ENST00000356887 2067 ntAPPRIS ALT2 TSL 1 (best) BASIC15.2■□□□□ 0.02
CPNE4Q96A23 SDCBP-202ENST00000413219 2086 ntAPPRIS P3 TSL 2 BASIC15.2■□□□□ 0.02
CPNE4Q96A23 CCDC94-201ENST00000262962 1434 ntAPPRIS P1 TSL 1 (best) BASIC15.2■□□□□ 0.02
CPNE4Q96A23 RER1-202ENST00000378512 1404 ntTSL 1 (best) BASIC15.2■□□□□ 0.02
CPNE4Q96A23 PRDM5-203ENST00000428209 2338 ntTSL 1 (best) BASIC15.2■□□□□ 0.02
CPNE4Q96A23 ATAD3A-207ENST00000536055 2332 ntTSL 2 BASIC15.2■□□□□ 0.02
CPNE4Q96A23 MFSD2A-202ENST00000372811 2154 ntAPPRIS P1 TSL 1 (best) BASIC15.2■□□□□ 0.02
CPNE4Q96A23 HIST1H2BL-201ENST00000377401 488 ntAPPRIS P1 BASIC15.2■□□□□ 0.02
Retrieved 100 of 98,524 protein–RNA pairs in 51.5 ms