Protein–RNA interactions for Protein: Q8WW32

HMGB4, High mobility group protein B4, humanhuman

Predictions only

Length 186 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
HMGB4Q8WW32 RNU1-129P-201ENST00000384064 167 ntBASIC16.94■□□□□ 0.3
HMGB4Q8WW32 SNCA-205ENST00000394991 1290 ntAPPRIS P1 TSL 1 (best) BASIC16.94■□□□□ 0.3
HMGB4Q8WW32 NDUFAF3-203ENST00000395458 808 ntTSL 2 BASIC16.94■□□□□ 0.3
HMGB4Q8WW32 CXCL12-206ENST00000395795 404 ntTSL 5 BASIC16.94■□□□□ 0.3
HMGB4Q8WW32 PSMA8-203ENST00000415576 1280 ntAPPRIS ALT2 TSL 1 (best) BASIC16.94■□□□□ 0.3
HMGB4Q8WW32 AC104135.1-201ENST00000418001 763 ntTSL 5 BASIC16.94■□□□□ 0.3
HMGB4Q8WW32 AC002472.2-201ENST00000442739 958 ntBASIC16.94■□□□□ 0.3
HMGB4Q8WW32 AC019103.1-201ENST00000503095 272 ntTSL 3 BASIC16.94■□□□□ 0.3
HMGB4Q8WW32 TERF1P3-201ENST00000505638 1227 ntBASIC16.94■□□□□ 0.3
HMGB4Q8WW32 TSC22D3-213ENST00000506081 956 ntTSL 5 BASIC16.94■□□□□ 0.3
HMGB4Q8WW32 POLD4-211ENST00000539074 714 ntTSL 3 BASIC16.94■□□□□ 0.3
HMGB4Q8WW32 AC090607.3-202ENST00000558971 383 ntTSL 3 BASIC16.94■□□□□ 0.3
HMGB4Q8WW32 U1.21-201ENST00000580816 167 ntBASIC16.94■□□□□ 0.3
HMGB4Q8WW32 ARHGEF18-201ENST00000319670 5212 ntAPPRIS P3 TSL 1 (best) BASIC16.94■□□□□ 0.3
HMGB4Q8WW32 LINC00671-201ENST00000301683 1958 ntTSL 2 BASIC16.94■□□□□ 0.3
HMGB4Q8WW32 ATP10A-201ENST00000356865 6680 ntAPPRIS P1 TSL 1 (best) BASIC16.94■□□□□ 0.3
HMGB4Q8WW32 AL354751.1-201ENST00000412768 1863 ntBASIC16.94■□□□□ 0.3
HMGB4Q8WW32 CD72-204ENST00000396757 2035 ntAPPRIS P2 TSL 5 BASIC16.94■□□□□ 0.3
HMGB4Q8WW32 C18orf8-208ENST00000590868 2002 ntTSL 2 BASIC16.94■□□□□ 0.3
HMGB4Q8WW32 SCARB2-201ENST00000264896 4792 ntAPPRIS P2 TSL 1 (best) BASIC16.94■□□□□ 0.3
HMGB4Q8WW32 LTBP4-205ENST00000396819 4764 ntAPPRIS ALT2 TSL 1 (best) BASIC16.94■□□□□ 0.3
HMGB4Q8WW32 PSENEN-202ENST00000587708 1661 ntAPPRIS P1 TSL 1 (best) BASIC16.94■□□□□ 0.3
HMGB4Q8WW32 ZBTB16-201ENST00000335953 2523 ntAPPRIS P1 TSL 1 (best) BASIC16.94■□□□□ 0.3
HMGB4Q8WW32 CLDN7-203ENST00000538261 1923 ntTSL 5 BASIC16.94■□□□□ 0.3
HMGB4Q8WW32 C2orf81-202ENST00000612891 1902 ntAPPRIS ALT2 TSL 5 BASIC16.94■□□□□ 0.3
HMGB4Q8WW32 EGFEM1P-202ENST00000431685 1563 ntBASIC16.94■□□□□ 0.3
HMGB4Q8WW32 FAM60A-203ENST00000454658 1555 ntAPPRIS P1 TSL 2 BASIC16.94■□□□□ 0.3
HMGB4Q8WW32 AC004951.4-201ENST00000454572 2076 ntTSL 1 (best) BASIC16.93■□□□□ 0.3
HMGB4Q8WW32 CLN3-229ENST00000567963 1452 ntTSL 5 BASIC16.93■□□□□ 0.3
HMGB4Q8WW32 OGG1-206ENST00000349503 1950 ntTSL 5 BASIC16.93■□□□□ 0.3
HMGB4Q8WW32 GNAS-203ENST00000306120 1878 ntBASIC16.93■□□□□ 0.3
HMGB4Q8WW32 PHKA1-201ENST00000339490 6121 ntAPPRIS ALT1 TSL 1 (best) BASIC16.93■□□□□ 0.3
HMGB4Q8WW32 ASB7-203ENST00000558747 2133 ntTSL 5 BASIC16.93■□□□□ 0.3
HMGB4Q8WW32 NF1-211ENST00000487476 2265 ntTSL 1 (best) BASIC16.93■□□□□ 0.3
HMGB4Q8WW32 CCDC28A-202ENST00000611852 1505 ntTSL 1 (best) BASIC16.93■□□□□ 0.3
HMGB4Q8WW32 PCDHA7-202ENST00000525929 5221 ntAPPRIS P2 TSL 1 (best) BASIC16.93■□□□□ 0.3
HMGB4Q8WW32 CSNK1G2-AS1-201ENST00000314315 1252 ntTSL 1 (best) BASIC16.93■□□□□ 0.3
HMGB4Q8WW32 POP5-202ENST00000357500 801 ntAPPRIS P1 TSL 1 (best) BASIC16.93■□□□□ 0.3
HMGB4Q8WW32 ITGA9-AS1-201ENST00000366441 895 ntTSL 3 BASIC16.93■□□□□ 0.3
HMGB4Q8WW32 TRAPPC3-203ENST00000373163 951 ntTSL 3 BASIC16.93■□□□□ 0.3
HMGB4Q8WW32 AC244107.1-201ENST00000442033 332 ntBASIC16.93■□□□□ 0.3
HMGB4Q8WW32 NAGK-205ENST00000443938 1221 ntAPPRIS ALT1 TSL 5 BASIC16.93■□□□□ 0.3
HMGB4Q8WW32 UGT1A2P-201ENST00000454886 866 ntBASIC16.93■□□□□ 0.3
HMGB4Q8WW32 AL512638.1-201ENST00000457493 794 ntBASIC16.93■□□□□ 0.3
HMGB4Q8WW32 OARD1-208ENST00000469104 704 ntTSL 2 BASIC16.93■□□□□ 0.3
HMGB4Q8WW32 AL391335.1-201ENST00000504583 535 ntTSL 4 BASIC16.93■□□□□ 0.3
HMGB4Q8WW32 SMCO4-204ENST00000527149 472 ntAPPRIS P1 TSL 5 BASIC16.93■□□□□ 0.3
HMGB4Q8WW32 ALG1L8P-201ENST00000533887 760 ntBASIC16.93■□□□□ 0.3
HMGB4Q8WW32 LINC01089-211ENST00000543334 1282 ntTSL 4 BASIC16.93■□□□□ 0.3
HMGB4Q8WW32 RN7SL204P-201ENST00000582831 262 ntBASIC16.93■□□□□ 0.3
HMGB4Q8WW32 IL11-202ENST00000585513 1201 ntAPPRIS P1 TSL 1 (best) BASIC16.93■□□□□ 0.3
HMGB4Q8WW32 AC027307.2-201ENST00000591252 911 ntBASIC16.93■□□□□ 0.3
HMGB4Q8WW32 OARD1-216ENST00000628419 1188 ntTSL 5 BASIC16.93■□□□□ 0.3
HMGB4Q8WW32 MBD1-206ENST00000382948 2434 ntAPPRIS P3 TSL 2 BASIC16.93■□□□□ 0.3
HMGB4Q8WW32 SLC29A1-202ENST00000371713 2168 ntAPPRIS P1 TSL 5 BASIC16.93■□□□□ 0.3
HMGB4Q8WW32 MAT2A-202ENST00000409017 1927 ntTSL 1 (best) BASIC16.93■□□□□ 0.3
HMGB4Q8WW32 PKP3-201ENST00000331563 2809 ntAPPRIS P1 TSL 1 (best) BASIC16.93■□□□□ 0.3
HMGB4Q8WW32 APOLD1-202ENST00000356591 4646 ntAPPRIS P1 TSL 1 (best) BASIC16.93■□□□□ 0.3
HMGB4Q8WW32 ZNF140-210ENST00000544426 2340 ntTSL 2 BASIC16.93■□□□□ 0.3
HMGB4Q8WW32 MATN3-202ENST00000421259 1443 ntAPPRIS ALT2 TSL 1 (best) BASIC16.93■□□□□ 0.3
HMGB4Q8WW32 ZNF395-211ENST00000523202 2068 ntAPPRIS P1 TSL 1 (best) BASIC16.93■□□□□ 0.3
HMGB4Q8WW32 ICA1-206ENST00000402384 2458 ntAPPRIS P3 TSL 2 BASIC16.93■□□□□ 0.3
HMGB4Q8WW32 CMPK2-201ENST00000256722 2884 ntAPPRIS P3 TSL 1 (best) BASIC16.93■□□□□ 0.3
HMGB4Q8WW32 NOMO3-201ENST00000263012 3911 ntAPPRIS ALT2 TSL 1 (best) BASIC16.93■□□□□ 0.3
HMGB4Q8WW32 CYP2D6-204ENST00000389970 1714 ntTSL 5 BASIC16.93■□□□□ 0.3
HMGB4Q8WW32 LINC01097-201ENST00000627163 2122 ntTSL 2 BASIC16.93■□□□□ 0.3
HMGB4Q8WW32 ASB13-201ENST00000357700 2699 ntAPPRIS P1 TSL 1 (best) BASIC16.93■□□□□ 0.3
HMGB4Q8WW32 TINF2-201ENST00000267415 1852 ntAPPRIS P4 TSL 1 (best) BASIC16.93■□□□□ 0.3
HMGB4Q8WW32 MOAP1-201ENST00000298894 2441 ntAPPRIS P1 TSL 1 (best) BASIC16.92■□□□□ 0.3
HMGB4Q8WW32 SDK1-202ENST00000404826 10397 ntAPPRIS P2 TSL 1 (best) BASIC16.92■□□□□ 0.3
HMGB4Q8WW32 STX3-201ENST00000337979 3299 ntAPPRIS P1 TSL 1 (best) BASIC16.92■□□□□ 0.3
HMGB4Q8WW32 KRT6A-201ENST00000330722 2310 ntAPPRIS P1 TSL 1 (best) BASIC16.92■□□□□ 0.3
HMGB4Q8WW32 TEX19-201ENST00000333437 1936 ntAPPRIS P1 TSL 1 (best) BASIC16.92■□□□□ 0.3
HMGB4Q8WW32 TOP3BP1-201ENST00000420768 1380 ntBASIC16.92■□□□□ 0.3
HMGB4Q8WW32 SDHA-204ENST00000504309 2067 ntTSL 5 BASIC16.92■□□□□ 0.3
HMGB4Q8WW32 CDIPT-209ENST00000569956 1532 ntAPPRIS P1 TSL 5 BASIC16.92■□□□□ 0.3
HMGB4Q8WW32 SLC35F3-201ENST00000366617 2762 ntAPPRIS ALT1 TSL 1 (best) BASIC16.92■□□□□ 0.3
HMGB4Q8WW32 SPSB4-201ENST00000310546 2908 ntAPPRIS P1 TSL 1 (best) BASIC16.92■□□□□ 0.3
HMGB4Q8WW32 CACNA1A-253ENST00000637927 6847 ntAPPRIS ALT2 TSL 5 BASIC16.92■□□□□ 0.3
HMGB4Q8WW32 PPAN-P2RY11-201ENST00000393796 2385 ntAPPRIS P1 TSL 1 (best) BASIC16.92■□□□□ 0.3
HMGB4Q8WW32 TMEM270-201ENST00000320531 854 ntAPPRIS P1 TSL 1 (best) BASIC16.92■□□□□ 0.3
HMGB4Q8WW32 TSPO-202ENST00000337554 881 ntAPPRIS P1 TSL 1 (best) BASIC16.92■□□□□ 0.3
HMGB4Q8WW32 NME1-NME2-202ENST00000393193 1021 ntAPPRIS P2 TSL 2 BASIC16.92■□□□□ 0.3
HMGB4Q8WW32 SELENOM-201ENST00000400299 694 ntAPPRIS P2 TSL 1 (best) BASIC16.92■□□□□ 0.3
HMGB4Q8WW32 CRIP1-203ENST00000409393 677 ntAPPRIS P1 TSL 3 BASIC16.92■□□□□ 0.3
HMGB4Q8WW32 ZDHHC20-IT1-201ENST00000417513 440 ntTSL 3 BASIC16.92■□□□□ 0.3
HMGB4Q8WW32 AC015922.1-201ENST00000421102 1152 ntBASIC16.92■□□□□ 0.3
HMGB4Q8WW32 CDH23-AS1-201ENST00000428918 378 ntTSL 2 BASIC16.92■□□□□ 0.3
HMGB4Q8WW32 C3orf14-202ENST00000462069 631 ntAPPRIS P1 TSL 1 (best) BASIC16.92■□□□□ 0.3
HMGB4Q8WW32 AC055854.1-201ENST00000523627 570 ntTSL 4 BASIC16.92■□□□□ 0.3
HMGB4Q8WW32 ZNF606-202ENST00000546715 636 ntTSL 4 BASIC16.92■□□□□ 0.3
HMGB4Q8WW32 NDUFA4L2-202ENST00000554503 1177 ntAPPRIS P1 TSL 1 (best) BASIC16.92■□□□□ 0.3
HMGB4Q8WW32 AC087641.1-201ENST00000557561 1021 ntBASIC16.92■□□□□ 0.3
HMGB4Q8WW32 GABARAP-205ENST00000573928 476 ntTSL 1 (best) BASIC16.92■□□□□ 0.3
HMGB4Q8WW32 AC091167.2-201ENST00000579581 588 ntBASIC16.92■□□□□ 0.3
HMGB4Q8WW32 PRR29-209ENST00000582540 967 ntTSL 2 BASIC16.92■□□□□ 0.3
HMGB4Q8WW32 AC008267.7-201ENST00000624570 1194 ntBASIC16.92■□□□□ 0.3
HMGB4Q8WW32 AP001350.2-201ENST00000625104 1094 ntBASIC16.92■□□□□ 0.3
HMGB4Q8WW32 AC020934.3-201ENST00000639810 348 ntAPPRIS P1 TSL 3 BASIC16.92■□□□□ 0.3
HMGB4Q8WW32 AF228730.6-201ENST00000641497 218 ntBASIC16.92■□□□□ 0.3
Retrieved 100 of 98,524 protein–RNA pairs in 32.5 ms