Protein–RNA interactions for Protein: Q8IWP9

CCDC28A, Coiled-coil domain-containing protein 28A, humanhuman

Predictions only

Length 274 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC28AQ8IWP9 INF2-204ENST00000398337 1689 ntTSL 1 (best) BASIC14.21□□□□□ -0.13
CCDC28AQ8IWP9 SPOCK3-201ENST00000357154 2986 ntAPPRIS ALT2 TSL 5 BASIC14.21□□□□□ -0.13
CCDC28AQ8IWP9 SLC25A35-201ENST00000380067 2785 ntTSL 2 BASIC14.21□□□□□ -0.13
CCDC28AQ8IWP9 SEC16A-202ENST00000290037 8982 ntAPPRIS ALT2 TSL 1 (best) BASIC14.21□□□□□ -0.13
CCDC28AQ8IWP9 DMTN-204ENST00000415253 2394 ntTSL 5 BASIC14.21□□□□□ -0.13
CCDC28AQ8IWP9 CLN3-206ENST00000360019 1840 ntTSL 2 BASIC14.21□□□□□ -0.13
CCDC28AQ8IWP9 TRAPPC5-201ENST00000317378 790 ntAPPRIS P1 TSL 1 (best) BASIC14.21□□□□□ -0.13
CCDC28AQ8IWP9 C10orf91-201ENST00000321248 1257 ntTSL 1 (best) BASIC14.21□□□□□ -0.13
CCDC28AQ8IWP9 PTPMT1-202ENST00000326674 768 ntAPPRIS P1 TSL 1 (best) BASIC14.21□□□□□ -0.13
CCDC28AQ8IWP9 EGFL7-202ENST00000371698 1282 ntAPPRIS P1 TSL 1 (best) BASIC14.21□□□□□ -0.13
CCDC28AQ8IWP9 HAGLROS-201ENST00000426615 1121 ntTSL 2 BASIC14.21□□□□□ -0.13
CCDC28AQ8IWP9 LINC01881-205ENST00000456398 1235 ntTSL 5 BASIC14.21□□□□□ -0.13
CCDC28AQ8IWP9 AC092849.2-201ENST00000492523 333 ntTSL 3 BASIC14.21□□□□□ -0.13
CCDC28AQ8IWP9 UNC93B4-201ENST00000505679 747 ntBASIC14.21□□□□□ -0.13
CCDC28AQ8IWP9 RNA5SP413-201ENST00000516373 109 ntBASIC14.21□□□□□ -0.13
CCDC28AQ8IWP9 LINC01578-208ENST00000557147 490 ntTSL 3 BASIC14.21□□□□□ -0.13
CCDC28AQ8IWP9 SEC23A-AS1-201ENST00000557350 500 ntTSL 3 BASIC14.21□□□□□ -0.13
CCDC28AQ8IWP9 PITPNM3-201ENST00000262483 7086 ntAPPRIS P3 TSL 1 (best) BASIC14.21□□□□□ -0.13
CCDC28AQ8IWP9 ZFY-201ENST00000155093 5239 ntAPPRIS P1 TSL 1 (best) BASIC14.21□□□□□ -0.13
CCDC28AQ8IWP9 FOLH1-202ENST00000340334 2697 ntTSL 1 (best) BASIC14.21□□□□□ -0.13
CCDC28AQ8IWP9 DMTN-214ENST00000519907 2658 ntTSL 5 BASIC14.21□□□□□ -0.13
CCDC28AQ8IWP9 SNCA-203ENST00000394986 1420 ntAPPRIS P1 TSL 1 (best) BASIC14.21□□□□□ -0.13
CCDC28AQ8IWP9 MPV17L2-204ENST00000599612 1408 ntAPPRIS P1 TSL 1 (best) BASIC14.21□□□□□ -0.13
CCDC28AQ8IWP9 KLHDC3-202ENST00000326974 1909 ntAPPRIS P1 TSL 1 (best) BASIC14.21□□□□□ -0.14
CCDC28AQ8IWP9 EID1-201ENST00000530028 2298 ntAPPRIS P1 BASIC14.21□□□□□ -0.14
CCDC28AQ8IWP9 RIPK1-201ENST00000259808 4160 ntAPPRIS P1 TSL 5 BASIC14.21□□□□□ -0.14
CCDC28AQ8IWP9 QRFPR-202ENST00000394427 1708 ntAPPRIS P1 TSL 1 (best) BASIC14.21□□□□□ -0.14
CCDC28AQ8IWP9 NKIRAS2-201ENST00000307641 2948 ntAPPRIS P1 TSL 1 (best) BASIC14.21□□□□□ -0.14
CCDC28AQ8IWP9 LINC01782-201ENST00000591212 2908 ntTSL 1 (best) BASIC14.21□□□□□ -0.14
CCDC28AQ8IWP9 EIF4G1-203ENST00000350481 4990 ntTSL 1 (best) BASIC14.21□□□□□ -0.14
CCDC28AQ8IWP9 KCP-203ENST00000610776 5108 ntTSL 5 BASIC14.21□□□□□ -0.14
CCDC28AQ8IWP9 SLC2A9-201ENST00000264784 1850 ntAPPRIS P4 TSL 1 (best) BASIC14.21□□□□□ -0.14
CCDC28AQ8IWP9 CEP164-201ENST00000278935 5630 ntAPPRIS P2 TSL 1 (best) BASIC14.21□□□□□ -0.14
CCDC28AQ8IWP9 LINC00304-203ENST00000565008 1864 ntBASIC14.21□□□□□ -0.14
CCDC28AQ8IWP9 NWD2-201ENST00000309447 8325 ntAPPRIS P1 TSL 5 BASIC14.21□□□□□ -0.14
CCDC28AQ8IWP9 PRDM4-201ENST00000228437 4210 ntAPPRIS P1 TSL 2 BASIC14.2□□□□□ -0.14
CCDC28AQ8IWP9 PAK6-203ENST00000542403 2540 ntAPPRIS P1 TSL 1 (best) BASIC14.2□□□□□ -0.14
CCDC28AQ8IWP9 RAPGEF1-202ENST00000372190 6045 ntAPPRIS P4 TSL 1 (best) BASIC14.2□□□□□ -0.14
CCDC28AQ8IWP9 SLC38A8-201ENST00000299709 1308 ntAPPRIS P1 TSL 5 BASIC14.2□□□□□ -0.14
CCDC28AQ8IWP9 AC083805.3-201ENST00000619560 1315 ntTSL 3 BASIC14.2□□□□□ -0.14
CCDC28AQ8IWP9 DGKZ-205ENST00000456247 3482 ntAPPRIS ALT2 TSL 1 (best) BASIC14.2□□□□□ -0.14
CCDC28AQ8IWP9 PLIN2-201ENST00000276914 1972 ntAPPRIS P1 TSL 1 (best) BASIC14.2□□□□□ -0.14
CCDC28AQ8IWP9 DDIT4L-201ENST00000273990 2604 ntAPPRIS P1 TSL 1 (best) BASIC14.2□□□□□ -0.14
CCDC28AQ8IWP9 RCAN3-207ENST00000538532 2640 ntAPPRIS P1 TSL 1 (best) BASIC14.2□□□□□ -0.14
CCDC28AQ8IWP9 PTGER3-203ENST00000354608 1470 ntAPPRIS ALT2 TSL 5 BASIC14.2□□□□□ -0.14
CCDC28AQ8IWP9 SIGLEC10-205ENST00000439889 2126 ntTSL 1 (best) BASIC14.2□□□□□ -0.14
CCDC28AQ8IWP9 PPRC1-203ENST00000413464 4580 ntTSL 2 BASIC14.2□□□□□ -0.14
CCDC28AQ8IWP9 GCK-202ENST00000345378 2421 ntTSL 2 BASIC14.2□□□□□ -0.14
CCDC28AQ8IWP9 TSPAN5-201ENST00000305798 3365 ntAPPRIS P1 TSL 1 (best) BASIC14.2□□□□□ -0.14
CCDC28AQ8IWP9 AC079447.1-201ENST00000424491 1947 ntAPPRIS P1 TSL 2 BASIC14.2□□□□□ -0.14
CCDC28AQ8IWP9 CELF4-223ENST00000603232 1906 ntAPPRIS ALT1 TSL 1 (best) BASIC14.2□□□□□ -0.14
CCDC28AQ8IWP9 RABGGTA-201ENST00000216840 2088 ntAPPRIS P1 TSL 1 (best) BASIC14.2□□□□□ -0.14
CCDC28AQ8IWP9 THAP7-201ENST00000215742 1213 ntAPPRIS P1 TSL 1 (best) BASIC14.2□□□□□ -0.14
CCDC28AQ8IWP9 CKLF-201ENST00000264001 669 ntAPPRIS P4 TSL 1 (best) BASIC14.2□□□□□ -0.14
CCDC28AQ8IWP9 IZUMO2-201ENST00000293405 728 ntAPPRIS P2 TSL 1 (best) BASIC14.2□□□□□ -0.14
CCDC28AQ8IWP9 AC016876.1-201ENST00000415124 352 ntTSL 3 BASIC14.2□□□□□ -0.14
CCDC28AQ8IWP9 KRT17P3-201ENST00000420566 1262 ntBASIC14.2□□□□□ -0.14
CCDC28AQ8IWP9 GCC2-AS1-202ENST00000440975 574 ntTSL 4 BASIC14.2□□□□□ -0.14
CCDC28AQ8IWP9 PDCD10-202ENST00000461494 934 ntAPPRIS P1 TSL 3 BASIC14.2□□□□□ -0.14
CCDC28AQ8IWP9 SLC29A4P2-201ENST00000504749 1089 ntBASIC14.2□□□□□ -0.14
CCDC28AQ8IWP9 C5orf49-202ENST00000509627 1020 ntAPPRIS ALT2 TSL 1 (best) BASIC14.2□□□□□ -0.14
CCDC28AQ8IWP9 CYB561-214ENST00000582034 1193 ntTSL 2 BASIC14.2□□□□□ -0.14
CCDC28AQ8IWP9 CYP27B1-201ENST00000228606 2540 ntAPPRIS P1 TSL 1 (best) BASIC14.2□□□□□ -0.14
CCDC28AQ8IWP9 C1RL-210ENST00000544702 1569 ntTSL 1 (best) BASIC14.2□□□□□ -0.14
CCDC28AQ8IWP9 GPR161-204ENST00000367838 2676 ntAPPRIS P1 TSL 1 (best) BASIC14.2□□□□□ -0.14
CCDC28AQ8IWP9 PDZD3-212ENST00000531114 2996 ntTSL 2 BASIC14.2□□□□□ -0.14
CCDC28AQ8IWP9 ATP1B1-201ENST00000367815 1883 ntAPPRIS P1 TSL 1 (best) BASIC14.2□□□□□ -0.14
CCDC28AQ8IWP9 ANXA8L1-203ENST00000613703 1874 ntTSL 2 BASIC14.2□□□□□ -0.14
CCDC28AQ8IWP9 CYP4F22-201ENST00000269703 2641 ntAPPRIS P1 TSL 2 BASIC14.2□□□□□ -0.14
CCDC28AQ8IWP9 SLC43A3-203ENST00000395124 2617 ntAPPRIS P3 TSL 1 (best) BASIC14.2□□□□□ -0.14
CCDC28AQ8IWP9 ZNF326-202ENST00000361911 1538 ntTSL 1 (best) BASIC14.2□□□□□ -0.14
CCDC28AQ8IWP9 KRT8P41-201ENST00000533985 1514 ntBASIC14.2□□□□□ -0.14
CCDC28AQ8IWP9 TIMP4-201ENST00000287814 1650 ntAPPRIS P1 TSL 1 (best) BASIC14.2□□□□□ -0.14
CCDC28AQ8IWP9 TMEM63C-201ENST00000298351 5334 ntAPPRIS P1 TSL 1 (best) BASIC14.2□□□□□ -0.14
CCDC28AQ8IWP9 NF2-205ENST00000361452 5884 ntTSL 1 (best) BASIC14.2□□□□□ -0.14
CCDC28AQ8IWP9 SRD5A2-201ENST00000622030 4648 ntAPPRIS P1 TSL 1 (best) BASIC14.19□□□□□ -0.14
CCDC28AQ8IWP9 RPH3AL-201ENST00000323434 2809 ntTSL 1 (best) BASIC14.19□□□□□ -0.14
CCDC28AQ8IWP9 LYSMD4-204ENST00000409796 2672 ntAPPRIS P1 TSL 1 (best) BASIC14.19□□□□□ -0.14
CCDC28AQ8IWP9 PPT1-215ENST00000641471 2368 ntBASIC14.19□□□□□ -0.14
CCDC28AQ8IWP9 GSDMD-201ENST00000262580 1762 ntAPPRIS P2 TSL 1 (best) BASIC14.19□□□□□ -0.14
CCDC28AQ8IWP9 RFC2-213ENST00000621097 1635 ntTSL 5 BASIC14.19□□□□□ -0.14
CCDC28AQ8IWP9 BTG3-201ENST00000339775 1485 ntTSL 1 (best) BASIC14.19□□□□□ -0.14
CCDC28AQ8IWP9 CGB7-203ENST00000597853 3386 ntAPPRIS P1 TSL 2 BASIC14.19□□□□□ -0.14
CCDC28AQ8IWP9 ACE-204ENST00000428043 5120 ntTSL 2 BASIC14.19□□□□□ -0.14
CCDC28AQ8IWP9 SEMA4F-201ENST00000339773 2177 ntTSL 1 (best) BASIC14.19□□□□□ -0.14
CCDC28AQ8IWP9 TCP10-210ENST00000617120 2182 ntAPPRIS ALT2 TSL 5 BASIC14.19□□□□□ -0.14
CCDC28AQ8IWP9 UBXN11-206ENST00000374222 2043 ntAPPRIS P4 TSL 5 BASIC14.19□□□□□ -0.14
CCDC28AQ8IWP9 ZNF662-201ENST00000328199 3186 ntAPPRIS P1 TSL 5 BASIC14.19□□□□□ -0.14
CCDC28AQ8IWP9 LPAR3-201ENST00000370611 1720 ntAPPRIS P1 TSL 1 (best) BASIC14.19□□□□□ -0.14
CCDC28AQ8IWP9 CD40-202ENST00000372285 1729 ntAPPRIS P1 TSL 1 (best) BASIC14.19□□□□□ -0.14
CCDC28AQ8IWP9 SERPINE2-206ENST00000447280 1716 ntTSL 2 BASIC14.19□□□□□ -0.14
CCDC28AQ8IWP9 ASIC4-202ENST00000358078 2741 ntAPPRIS ALT2 TSL 5 BASIC14.19□□□□□ -0.14
CCDC28AQ8IWP9 CAMK1D-204ENST00000619168 8153 ntAPPRIS P4 TSL 1 (best) BASIC14.19□□□□□ -0.14
CCDC28AQ8IWP9 MYLKP1-201ENST00000509077 1580 ntBASIC14.19□□□□□ -0.14
CCDC28AQ8IWP9 NPIPA8-201ENST00000525596 1565 ntAPPRIS P1 TSL 1 (best) BASIC14.19□□□□□ -0.14
CCDC28AQ8IWP9 FDFT1-209ENST00000525900 1596 ntTSL 5 BASIC14.19□□□□□ -0.14
CCDC28AQ8IWP9 TSPAN3-210ENST00000561277 1592 ntTSL 5 BASIC14.19□□□□□ -0.14
CCDC28AQ8IWP9 NTMT1-209ENST00000611055 1562 ntAPPRIS P1 TSL 3 BASIC14.19□□□□□ -0.14
CCDC28AQ8IWP9 GSAP-201ENST00000257626 3251 ntAPPRIS P1 TSL 1 (best) BASIC14.19□□□□□ -0.14
CCDC28AQ8IWP9 MRAP-201ENST00000303645 935 ntAPPRIS P4 TSL 1 (best) BASIC14.19□□□□□ -0.14
Retrieved 100 of 98,524 protein–RNA pairs in 24.3 ms