Protein–RNA interactions for Protein: Q5VIR6

VPS53, Vacuolar protein sorting-associated protein 53 homolog, humanhuman

Predictions only

Length 699 aa.

Download Table  
Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
VPS53Q5VIR6 MRFAP1-205ENST00000617365 2112 ntTSL 5 BASIC20.47■□□□□ 0.87
VPS53Q5VIR6 SCNN1A-205ENST00000396966 2336 ntTSL 3 BASIC20.47■□□□□ 0.87
VPS53Q5VIR6 RECK-201ENST00000377966 4888 ntAPPRIS P1 TSL 1 (best) BASIC20.47■□□□□ 0.87
VPS53Q5VIR6 CHRNG-201ENST00000389492 1398 ntTSL 1 (best) BASIC20.46■□□□□ 0.87
VPS53Q5VIR6 TBC1D1-203ENST00000402522 1567 ntTSL 2 BASIC20.46■□□□□ 0.87
VPS53Q5VIR6 IL34-202ENST00000429149 1779 ntAPPRIS P2 TSL 5 BASIC20.46■□□□□ 0.87
VPS53Q5VIR6 RHBG-204ENST00000537040 1789 ntAPPRIS P1 TSL 1 (best) BASIC20.46■□□□□ 0.87
VPS53Q5VIR6 DOK4-201ENST00000340099 2772 ntAPPRIS P1 TSL 1 (best) BASIC20.46■□□□□ 0.87
VPS53Q5VIR6 ADGRG2-209ENST00000379876 4779 ntTSL 1 (best) BASIC20.46■□□□□ 0.87
VPS53Q5VIR6 KCNC1-202ENST00000379472 7965 ntTSL 1 (best) BASIC20.46■□□□□ 0.87
VPS53Q5VIR6 EWSR1-222ENST00000629659 2446 ntTSL 5 BASIC20.46■□□□□ 0.87
VPS53Q5VIR6 TPM1-205ENST00000357980 1800 ntTSL 2 BASIC20.46■□□□□ 0.87
VPS53Q5VIR6 SP3-203ENST00000418194 3937 ntAPPRIS ALT2 TSL 1 (best) BASIC20.46■□□□□ 0.87
VPS53Q5VIR6 ADARB1-202ENST00000360697 6604 ntTSL 1 (best) BASIC20.46■□□□□ 0.87
VPS53Q5VIR6 RHOT1-201ENST00000333942 3133 ntAPPRIS ALT1 TSL 1 (best) BASIC20.46■□□□□ 0.87
VPS53Q5VIR6 AC083864.1-201ENST00000381493 1497 ntTSL 1 (best) BASIC20.46■□□□□ 0.87
VPS53Q5VIR6 SLC29A1-208ENST00000393844 2326 ntAPPRIS P1 TSL 1 (best) BASIC20.46■□□□□ 0.87
VPS53Q5VIR6 PLGRKT-201ENST00000223864 932 ntAPPRIS P1 TSL 1 (best) BASIC20.46■□□□□ 0.87
VPS53Q5VIR6 MSANTD3-201ENST00000374885 786 ntTSL 2 BASIC20.46■□□□□ 0.87
VPS53Q5VIR6 NTMT1-205ENST00000459968 1123 ntTSL 2 BASIC20.46■□□□□ 0.87
VPS53Q5VIR6 NTMT1-207ENST00000482347 1072 ntTSL 2 BASIC20.46■□□□□ 0.87
VPS53Q5VIR6 SLC25A6P2-201ENST00000497974 877 ntBASIC20.46■□□□□ 0.87
VPS53Q5VIR6 AC091182.1-202ENST00000518765 713 ntTSL 2 BASIC20.46■□□□□ 0.87
VPS53Q5VIR6 RNASEK-203ENST00000549393 783 ntTSL 3 BASIC20.46■□□□□ 0.87
VPS53Q5VIR6 AC009061.1-201ENST00000567261 475 ntTSL 3 BASIC20.46■□□□□ 0.87
VPS53Q5VIR6 HMGN3-203ENST00000620514 1010 ntTSL 3 BASIC20.46■□□□□ 0.87
VPS53Q5VIR6 AC004790.2-201ENST00000623588 572 ntBASIC20.46■□□□□ 0.87
VPS53Q5VIR6 PSMA6-216ENST00000627895 484 ntTSL 5 BASIC20.46■□□□□ 0.87
VPS53Q5VIR6 MAT2A-202ENST00000409017 1927 ntTSL 1 (best) BASIC20.46■□□□□ 0.87
VPS53Q5VIR6 CCDC142-201ENST00000290418 2835 ntAPPRIS P2 TSL 2 BASIC20.46■□□□□ 0.87
VPS53Q5VIR6 PCDHA2-201ENST00000378132 2626 ntAPPRIS ALT2 BASIC20.46■□□□□ 0.87
VPS53Q5VIR6 ZNF79-204ENST00000617266 1969 ntTSL 3 BASIC20.46■□□□□ 0.87
VPS53Q5VIR6 ZNF561-AS1-204ENST00000587536 1799 ntTSL 2 BASIC20.46■□□□□ 0.87
VPS53Q5VIR6 ZBTB16-202ENST00000392996 2287 ntAPPRIS P1 TSL 1 (best) BASIC20.46■□□□□ 0.87
VPS53Q5VIR6 PRPF31-203ENST00000419967 2269 ntTSL 5 BASIC20.46■□□□□ 0.87
VPS53Q5VIR6 HS6ST2-203ENST00000406696 1818 ntAPPRIS P1 TSL 1 (best) BASIC20.46■□□□□ 0.87
VPS53Q5VIR6 TMEM177-201ENST00000272521 1394 ntAPPRIS P1 TSL 1 (best) BASIC20.46■□□□□ 0.87
VPS53Q5VIR6 ZNF517-202ENST00000525105 1383 ntTSL 1 (best) BASIC20.46■□□□□ 0.87
VPS53Q5VIR6 MTDH-201ENST00000336273 6177 ntAPPRIS P1 TSL 1 (best) BASIC20.45■□□□□ 0.86
VPS53Q5VIR6 AC104109.2-201ENST00000602919 1418 ntBASIC20.45■□□□□ 0.86
VPS53Q5VIR6 PDZD8-201ENST00000334464 9699 ntAPPRIS P1 TSL 1 (best) BASIC20.45■□□□□ 0.86
VPS53Q5VIR6 GCAT-201ENST00000248924 1497 ntAPPRIS P1 TSL 1 (best) BASIC20.45■□□□□ 0.86
VPS53Q5VIR6 AC062028.1-203ENST00000447433 1472 ntTSL 1 (best) BASIC20.45■□□□□ 0.86
VPS53Q5VIR6 ENC1-207ENST00000618628 5657 ntAPPRIS P1 TSL 5 BASIC20.45■□□□□ 0.86
VPS53Q5VIR6 RBPJL-201ENST00000343694 2489 ntAPPRIS P3 TSL 1 (best) BASIC20.45■□□□□ 0.86
VPS53Q5VIR6 HGS-201ENST00000329138 2970 ntAPPRIS P1 TSL 1 (best) BASIC20.45■□□□□ 0.86
VPS53Q5VIR6 MTCL1-205ENST00000517570 6009 ntAPPRIS ALT2 TSL 1 (best) BASIC20.45■□□□□ 0.86
VPS53Q5VIR6 CDIPT-209ENST00000569956 1532 ntAPPRIS P1 TSL 5 BASIC20.45■□□□□ 0.86
VPS53Q5VIR6 MAP3K6-202ENST00000374040 4309 ntTSL 1 (best) BASIC20.45■□□□□ 0.86
VPS53Q5VIR6 CTSG-201ENST00000216336 886 ntAPPRIS P1 TSL 1 (best) BASIC20.45■□□□□ 0.86
VPS53Q5VIR6 CCDC107-201ENST00000327351 804 ntAPPRIS ALT2 TSL 1 (best) BASIC20.45■□□□□ 0.86
VPS53Q5VIR6 RESP18-201ENST00000333527 795 ntAPPRIS P2 TSL 1 (best) BASIC20.45■□□□□ 0.86
VPS53Q5VIR6 YIF1B-203ENST00000339413 1225 ntAPPRIS P1 TSL 1 (best) BASIC20.45■□□□□ 0.86
VPS53Q5VIR6 HYAL1-206ENST00000447605 666 ntTSL 1 (best) BASIC20.45■□□□□ 0.86
VPS53Q5VIR6 PRSS21-202ENST00000450020 1106 ntTSL 1 (best) BASIC20.45■□□□□ 0.86
VPS53Q5VIR6 RPL13AP23-201ENST00000480739 586 ntBASIC20.45■□□□□ 0.86
VPS53Q5VIR6 AC034105.1-201ENST00000563488 319 ntBASIC20.45■□□□□ 0.86
VPS53Q5VIR6 BABAM1-206ENST00000595632 966 ntAPPRIS ALT2 TSL 5 BASIC20.45■□□□□ 0.86
VPS53Q5VIR6 CRB3-204ENST00000600229 1078 ntAPPRIS ALT2 TSL 2 BASIC20.45■□□□□ 0.86
VPS53Q5VIR6 HIST1H2AK-201ENST00000618958 393 ntAPPRIS P1 BASIC20.45■□□□□ 0.86
VPS53Q5VIR6 PIGX-202ENST00000392391 3057 ntAPPRIS ALT2 TSL 1 (best) BASIC20.45■□□□□ 0.86
VPS53Q5VIR6 L1CAM-203ENST00000370055 4655 ntTSL 5 BASIC20.45■□□□□ 0.86
VPS53Q5VIR6 TTC13-202ENST00000366662 3112 ntAPPRIS ALT2 TSL 1 (best) BASIC20.45■□□□□ 0.86
VPS53Q5VIR6 LINC02415-201ENST00000508505 1315 ntTSL 1 (best) BASIC20.45■□□□□ 0.86
VPS53Q5VIR6 AES-201ENST00000221561 1884 ntTSL 1 (best) BASIC20.45■□□□□ 0.86
VPS53Q5VIR6 NKIRAS1-202ENST00000412028 1605 ntAPPRIS ALT1 TSL 5 BASIC20.45■□□□□ 0.86
VPS53Q5VIR6 JPT1-209ENST00000482348 1614 ntTSL 1 (best) BASIC20.45■□□□□ 0.86
VPS53Q5VIR6 ADAM10-205ENST00000461408 1932 ntTSL 2 BASIC20.45■□□□□ 0.86
VPS53Q5VIR6 GRB7-201ENST00000309156 2243 ntAPPRIS P1 TSL 1 (best) BASIC20.45■□□□□ 0.86
VPS53Q5VIR6 AXIN1-201ENST00000262320 3643 ntAPPRIS P4 TSL 1 (best) BASIC20.45■□□□□ 0.86
VPS53Q5VIR6 CDK8-201ENST00000381527 3055 ntAPPRIS P1 TSL 1 (best) BASIC20.45■□□□□ 0.86
VPS53Q5VIR6 SHANK3-201ENST00000262795 7091 ntAPPRIS P5 TSL 5 BASIC20.45■□□□□ 0.86
VPS53Q5VIR6 FCHO1-201ENST00000252771 3118 ntAPPRIS P1 TSL 5 BASIC20.44■□□□□ 0.86
VPS53Q5VIR6 SNTG2-202ENST00000407292 1436 ntTSL 1 (best) BASIC20.44■□□□□ 0.86
VPS53Q5VIR6 AC124067.4-201ENST00000519691 2379 ntBASIC20.44■□□□□ 0.86
VPS53Q5VIR6 COL4A3BP-203ENST00000380494 5651 ntTSL 2 BASIC20.44■□□□□ 0.86
VPS53Q5VIR6 ZBTB11-202ENST00000461821 2115 ntTSL 1 (best) BASIC20.44■□□□□ 0.86
VPS53Q5VIR6 LRRC3-201ENST00000291592 5869 ntAPPRIS P1 TSL 1 (best) BASIC20.44■□□□□ 0.86
VPS53Q5VIR6 ADGRG2-208ENST00000379873 4698 ntTSL 1 (best) BASIC20.44■□□□□ 0.86
VPS53Q5VIR6 TBC1D7-202ENST00000356436 1116 ntAPPRIS P1 TSL 1 (best) BASIC20.44■□□□□ 0.86
VPS53Q5VIR6 ADIPOR1-202ENST00000367254 1116 ntTSL 1 (best) BASIC20.44■□□□□ 0.86
VPS53Q5VIR6 TBC1D7-204ENST00000379300 1276 ntAPPRIS P1 TSL 1 (best) BASIC20.44■□□□□ 0.86
VPS53Q5VIR6 YDJC-202ENST00000398873 1066 ntTSL 1 (best) BASIC20.44■□□□□ 0.86
VPS53Q5VIR6 AC087163.2-201ENST00000457299 853 ntBASIC20.44■□□□□ 0.86
VPS53Q5VIR6 AC108751.1-201ENST00000490852 363 ntBASIC20.44■□□□□ 0.86
VPS53Q5VIR6 AC034213.1-201ENST00000507681 806 ntTSL 3 BASIC20.44■□□□□ 0.86
VPS53Q5VIR6 LDLRAD2-203ENST00000543870 1180 ntAPPRIS P1 TSL 1 (best) BASIC20.44■□□□□ 0.86
VPS53Q5VIR6 LINC00596-201ENST00000559615 937 ntTSL 5 BASIC20.44■□□□□ 0.86
VPS53Q5VIR6 CLEC18C-201ENST00000314151 1934 ntAPPRIS P2 TSL 1 (best) BASIC20.44■□□□□ 0.86
VPS53Q5VIR6 CLEC18A-208ENST00000568461 1934 ntAPPRIS P2 TSL 1 (best) BASIC20.44■□□□□ 0.86
VPS53Q5VIR6 C9orf62-201ENST00000623103 1924 ntTSL 1 (best) BASIC20.44■□□□□ 0.86
VPS53Q5VIR6 NKAIN1-201ENST00000373736 2589 ntAPPRIS P1 TSL 2 BASIC20.44■□□□□ 0.86
VPS53Q5VIR6 RUNX1-203ENST00000358356 2720 ntTSL 1 (best) BASIC20.44■□□□□ 0.86
VPS53Q5VIR6 HFE2-204ENST00000475797 1381 ntTSL 2 BASIC20.44■□□□□ 0.86
VPS53Q5VIR6 SRSF2-205ENST00000508921 1390 ntTSL 2 BASIC20.44■□□□□ 0.86
VPS53Q5VIR6 CCDC28B-202ENST00000421922 1415 ntTSL 1 (best) BASIC20.44■□□□□ 0.86
VPS53Q5VIR6 AL365277.1-202ENST00000331856 2241 ntTSL 2 BASIC20.43■□□□□ 0.86
VPS53Q5VIR6 MREG-205ENST00000620139 2618 ntAPPRIS P1 TSL 2 BASIC20.43■□□□□ 0.86
VPS53Q5VIR6 AC021148.1-201ENST00000513652 1532 ntTSL 1 (best) BASIC20.43■□□□□ 0.86
VPS53Q5VIR6 SYVN1-203ENST00000377190 3052 ntTSL 1 (best) BASIC20.43■□□□□ 0.86
Retrieved 100 of 98,524 protein–RNA pairs in 32.5 ms