Protein–RNA interactions for Protein: P55317

FOXA1, Hepatocyte nuclear factor 3-alpha, humanhuman

Predictions only

Length 472 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
FOXA1P55317 AC132008.2-207ENST00000454517 770 ntBASIC16.43■□□□□ 0.22
FOXA1P55317 HOXB-AS4-202ENST00000480386 566 ntTSL 4 BASIC16.43■□□□□ 0.22
FOXA1P55317 KRT18P35-201ENST00000510488 1269 ntBASIC16.43■□□□□ 0.22
FOXA1P55317 CTDNEP1-207ENST00000572043 857 ntTSL 3 BASIC16.43■□□□□ 0.22
FOXA1P55317 AC016876.1-204ENST00000573187 679 ntTSL 3 BASIC16.43■□□□□ 0.22
FOXA1P55317 AC064862.7-201ENST00000604520 867 ntBASIC16.43■□□□□ 0.22
FOXA1P55317 AL353135.1-201ENST00000606729 504 ntBASIC16.43■□□□□ 0.22
FOXA1P55317 AC010331.1-201ENST00000611423 582 ntBASIC16.43■□□□□ 0.22
FOXA1P55317 DNASE1L2-206ENST00000613572 1260 ntAPPRIS P1 TSL 5 BASIC16.43■□□□□ 0.22
FOXA1P55317 AC132872.3-201ENST00000620937 629 ntTSL 5 BASIC16.43■□□□□ 0.22
FOXA1P55317 AC005906.2-206ENST00000638180 1029 ntTSL 5 BASIC16.43■□□□□ 0.22
FOXA1P55317 CCDC40-201ENST00000269318 1970 ntTSL 2 BASIC16.43■□□□□ 0.22
FOXA1P55317 DDX42-208ENST00000578681 4337 ntAPPRIS P1 TSL 1 (best) BASIC16.43■□□□□ 0.22
FOXA1P55317 EPHA10-203ENST00000427468 3167 ntAPPRIS ALT2 TSL 5 BASIC16.43■□□□□ 0.22
FOXA1P55317 ASAH1-231ENST00000636577 2129 ntTSL 5 BASIC16.43■□□□□ 0.22
FOXA1P55317 ADCY6-202ENST00000357869 5748 ntTSL 2 BASIC16.43■□□□□ 0.22
FOXA1P55317 POTEE-204ENST00000613282 1926 ntTSL 5 BASIC16.43■□□□□ 0.22
FOXA1P55317 POTEI-202ENST00000615053 1926 ntTSL 5 BASIC16.43■□□□□ 0.22
FOXA1P55317 FAM76B-201ENST00000358780 3952 ntAPPRIS P3 TSL 1 (best) BASIC16.43■□□□□ 0.22
FOXA1P55317 RFWD2-204ENST00000367669 3033 ntAPPRIS P1 TSL 1 (best) BASIC16.43■□□□□ 0.22
FOXA1P55317 CD9-203ENST00000382518 1556 ntAPPRIS P1 TSL 5 BASIC16.43■□□□□ 0.22
FOXA1P55317 PPAN-P2RY11-202ENST00000428358 2661 ntTSL 2 BASIC16.42■□□□□ 0.22
FOXA1P55317 CYB5R3-204ENST00000407332 1849 ntTSL 1 (best) BASIC16.42■□□□□ 0.22
FOXA1P55317 REPS1-201ENST00000258062 3161 ntAPPRIS P3 TSL 1 (best) BASIC16.42■□□□□ 0.22
FOXA1P55317 PLCG1-202ENST00000373271 7395 ntAPPRIS ALT1 TSL 1 (best) BASIC16.42■□□□□ 0.22
FOXA1P55317 MIOS-202ENST00000405785 3095 ntAPPRIS P1 TSL 5 BASIC16.42■□□□□ 0.22
FOXA1P55317 MIER1-205ENST00000371014 1728 ntTSL 2 BASIC16.42■□□□□ 0.22
FOXA1P55317 C2orf54-203ENST00000402775 1958 ntAPPRIS ALT2 TSL 2 BASIC16.42■□□□□ 0.22
FOXA1P55317 CTSD-213ENST00000637915 1982 ntAPPRIS ALT2 TSL 5 BASIC16.42■□□□□ 0.22
FOXA1P55317 ATP6V0E2-AS1-201ENST00000461019 2973 ntTSL 1 (best) BASIC16.42■□□□□ 0.22
FOXA1P55317 BSG-202ENST00000346916 1605 ntTSL 1 (best) BASIC16.42■□□□□ 0.22
FOXA1P55317 AFTPH-202ENST00000238856 4040 ntAPPRIS P3 TSL 1 (best) BASIC16.42■□□□□ 0.22
FOXA1P55317 EFEMP1-202ENST00000394555 3024 ntAPPRIS P1 TSL 1 (best) BASIC16.42■□□□□ 0.22
FOXA1P55317 CNGA3-205ENST00000436404 2504 ntAPPRIS ALT2 TSL 1 (best) BASIC16.42■□□□□ 0.22
FOXA1P55317 CHAT-203ENST00000351556 2286 ntAPPRIS ALT2 TSL 5 BASIC16.42■□□□□ 0.22
FOXA1P55317 BCAT2-202ENST00000402551 2041 ntTSL 2 BASIC16.42■□□□□ 0.22
FOXA1P55317 TVP23C-201ENST00000225576 1527 ntTSL 1 (best) BASIC16.42■□□□□ 0.22
FOXA1P55317 SNX19-207ENST00000528555 1506 ntTSL 2 BASIC16.42■□□□□ 0.22
FOXA1P55317 PSME3-202ENST00000441946 2944 ntTSL 2 BASIC16.42■□□□□ 0.22
FOXA1P55317 DGKZ-202ENST00000343674 3816 ntAPPRIS P3 TSL 2 BASIC16.42■□□□□ 0.22
FOXA1P55317 CDKN1C-201ENST00000380725 1220 ntAPPRIS ALT2 TSL 2 BASIC16.42■□□□□ 0.22
FOXA1P55317 GNB1L-203ENST00000405009 1076 ntTSL 1 (best) BASIC16.42■□□□□ 0.22
FOXA1P55317 ISOC2-202ENST00000425675 998 ntAPPRIS P1 TSL 1 (best) BASIC16.42■□□□□ 0.22
FOXA1P55317 TUBB3-205ENST00000554336 903 ntTSL 3 BASIC16.42■□□□□ 0.22
FOXA1P55317 ZFPM1-205ENST00000569086 563 ntTSL 2 BASIC16.42■□□□□ 0.22
FOXA1P55317 IGHV3OR16-7-201ENST00000604106 360 ntBASIC16.42■□□□□ 0.22
FOXA1P55317 AC008567.3-202ENST00000619671 859 ntTSL 1 (best) BASIC16.42■□□□□ 0.22
FOXA1P55317 MUL1-201ENST00000264198 2438 ntAPPRIS P1 TSL 1 (best) BASIC16.42■□□□□ 0.22
FOXA1P55317 CHN1-205ENST00000409900 2447 ntAPPRIS P1 TSL 1 (best) BASIC16.42■□□□□ 0.22
FOXA1P55317 TMEM161A-201ENST00000162044 1820 ntAPPRIS P1 TSL 1 (best) BASIC16.42■□□□□ 0.22
FOXA1P55317 AIFM1-202ENST00000319908 2248 ntAPPRIS ALT2 TSL 1 (best) BASIC16.42■□□□□ 0.22
FOXA1P55317 FRMD6-AS1-201ENST00000617151 2229 ntBASIC16.42■□□□□ 0.22
FOXA1P55317 NPNT-201ENST00000305572 3003 ntTSL 1 (best) BASIC16.42■□□□□ 0.22
FOXA1P55317 PPP1R21-206ENST00000449090 3049 ntTSL 1 (best) BASIC16.42■□□□□ 0.22
FOXA1P55317 UCKL1-203ENST00000369908 1954 ntAPPRIS P1 TSL 2 BASIC16.42■□□□□ 0.22
FOXA1P55317 LINC00887-203ENST00000429578 1717 ntTSL 2 BASIC16.42■□□□□ 0.22
FOXA1P55317 DAPK1-207ENST00000469640 5899 ntTSL 5 BASIC16.42■□□□□ 0.22
FOXA1P55317 RNF31-201ENST00000324103 3627 ntAPPRIS P1 TSL 1 (best) BASIC16.42■□□□□ 0.22
FOXA1P55317 CROCC2-201ENST00000443866 5382 ntAPPRIS P1 TSL 5 BASIC16.41■□□□□ 0.22
FOXA1P55317 ACTN4-201ENST00000252699 4963 ntAPPRIS P1 TSL 1 (best) BASIC16.41■□□□□ 0.22
FOXA1P55317 NR2C2-201ENST00000323373 2406 ntTSL 1 (best) BASIC16.41■□□□□ 0.22
FOXA1P55317 DHX36-202ENST00000329463 2985 ntAPPRIS ALT2 TSL 1 (best) BASIC16.41■□□□□ 0.22
FOXA1P55317 SCYL1-214ENST00000533862 2570 ntTSL 5 BASIC16.41■□□□□ 0.22
FOXA1P55317 AC136759.1-201ENST00000534201 2163 ntTSL 2 BASIC16.41■□□□□ 0.22
FOXA1P55317 TPD52L2-209ENST00000611972 2197 ntTSL 3 BASIC16.41■□□□□ 0.22
FOXA1P55317 AL021920.2-201ENST00000624828 1351 ntBASIC16.41■□□□□ 0.22
FOXA1P55317 ZBP1-202ENST00000395822 2073 ntTSL 2 BASIC16.41■□□□□ 0.22
FOXA1P55317 AC132872.4-202ENST00000622924 2756 ntBASIC16.41■□□□□ 0.22
FOXA1P55317 CLCF1-201ENST00000312438 1844 ntAPPRIS P3 TSL 1 (best) BASIC16.41■□□□□ 0.22
FOXA1P55317 RCOR3-204ENST00000452621 1827 ntTSL 2 BASIC16.41■□□□□ 0.22
FOXA1P55317 SIN3A-203ENST00000394949 4930 ntAPPRIS P1 TSL 1 (best) BASIC16.41■□□□□ 0.22
FOXA1P55317 KRT23-201ENST00000209718 1987 ntAPPRIS P1 TSL 1 (best) BASIC16.41■□□□□ 0.22
FOXA1P55317 ATPIF1-201ENST00000335514 494 ntAPPRIS P1 TSL 1 (best) BASIC16.41■□□□□ 0.22
FOXA1P55317 SLC2A1-204ENST00000460369 541 ntTSL 2 BASIC16.41■□□□□ 0.22
FOXA1P55317 DZIP1L-204ENST00000469243 2107 ntAPPRIS ALT2 TSL 2 BASIC16.41■□□□□ 0.22
FOXA1P55317 LINC02237-202ENST00000521904 477 ntTSL 3 BASIC16.41■□□□□ 0.22
FOXA1P55317 SRSF1-209ENST00000585096 568 ntTSL 4 BASIC16.41■□□□□ 0.22
FOXA1P55317 TMEM114-203ENST00000620492 945 ntAPPRIS P1 TSL 2 BASIC16.41■□□□□ 0.22
FOXA1P55317 DHRS4L2-211ENST00000621761 1049 ntTSL 5 BASIC16.41■□□□□ 0.22
FOXA1P55317 SCUBE2-207ENST00000520467 3148 ntAPPRIS P1 TSL 2 BASIC16.41■□□□□ 0.22
FOXA1P55317 AZIN2-203ENST00000373441 1443 ntTSL 1 (best) BASIC16.41■□□□□ 0.22
FOXA1P55317 KRT8P49-201ENST00000604166 1432 ntBASIC16.41■□□□□ 0.22
FOXA1P55317 NR4A2-203ENST00000409108 1735 ntTSL 5 BASIC16.41■□□□□ 0.22
FOXA1P55317 CD72-204ENST00000396757 2035 ntAPPRIS P2 TSL 5 BASIC16.41■□□□□ 0.22
FOXA1P55317 SYDE2-202ENST00000341460 5512 ntAPPRIS P1 TSL 5 BASIC16.41■□□□□ 0.22
FOXA1P55317 TM9SF1-201ENST00000261789 2452 ntAPPRIS P1 TSL 1 (best) BASIC16.41■□□□□ 0.22
FOXA1P55317 MELTF-201ENST00000296350 3963 ntAPPRIS P1 TSL 1 (best) BASIC16.41■□□□□ 0.22
FOXA1P55317 BRI3BP-201ENST00000341446 6648 ntAPPRIS P1 TSL 1 (best) BASIC16.41■□□□□ 0.22
FOXA1P55317 CCDC90B-203ENST00000525503 1919 ntTSL 1 (best) BASIC16.41■□□□□ 0.22
FOXA1P55317 ACOT12-201ENST00000307624 2086 ntAPPRIS P1 TSL 1 (best) BASIC16.41■□□□□ 0.22
FOXA1P55317 TAF1B-201ENST00000263663 2387 ntAPPRIS P1 TSL 1 (best) BASIC16.41■□□□□ 0.22
FOXA1P55317 DNM2-203ENST00000389253 3581 ntTSL 5 BASIC16.41■□□□□ 0.22
FOXA1P55317 CTPS2-201ENST00000359276 3629 ntAPPRIS P1 TSL 1 (best) BASIC16.4■□□□□ 0.22
FOXA1P55317 BX088651.4-201ENST00000435586 2579 ntTSL 2 BASIC16.4■□□□□ 0.22
FOXA1P55317 DEF6-201ENST00000316637 2262 ntAPPRIS P1 TSL 1 (best) BASIC16.4■□□□□ 0.22
FOXA1P55317 FBXO4-201ENST00000281623 1682 ntAPPRIS P1 TSL 1 (best) BASIC16.4■□□□□ 0.22
FOXA1P55317 RASL11A-201ENST00000241463 1543 ntAPPRIS P1 TSL 1 (best) BASIC16.4■□□□□ 0.22
FOXA1P55317 SDC4-201ENST00000372733 2613 ntAPPRIS P1 TSL 1 (best) BASIC16.4■□□□□ 0.22
FOXA1P55317 TRIP10-201ENST00000313244 2153 ntTSL 1 (best) BASIC16.4■□□□□ 0.22
FOXA1P55317 C7orf31-201ENST00000283905 2673 ntAPPRIS P1 TSL 1 (best) BASIC16.4■□□□□ 0.22
Retrieved 100 of 98,524 protein–RNA pairs in 34.7 ms