Protein–RNA interactions for Protein: P51784

USP11, Ubiquitin carboxyl-terminal hydrolase 11, humanhuman

Predictions only

Length 963 aa.

Download Table  
Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
USP11P51784 ABTB1-201ENST00000232744 1965 ntAPPRIS P1 TSL 1 (best) BASIC19.09■□□□□ 0.65
USP11P51784 HOXB6-203ENST00000484302 1960 ntAPPRIS P1 TSL 2 BASIC19.09■□□□□ 0.65
USP11P51784 PTGES3-201ENST00000262033 1920 ntAPPRIS P1 TSL 1 (best) BASIC19.09■□□□□ 0.65
USP11P51784 SCARB2-223ENST00000640640 4608 ntTSL 5 BASIC19.09■□□□□ 0.65
USP11P51784 ASIC3-203ENST00000357922 2232 ntTSL 1 (best) BASIC19.09■□□□□ 0.65
USP11P51784 WDR45-234ENST00000634838 1545 ntTSL 5 BASIC19.09■□□□□ 0.65
USP11P51784 AL355987.4-201ENST00000415992 4244 ntTSL 2 BASIC19.09■□□□□ 0.65
USP11P51784 CCDC112-205ENST00000506442 2145 ntAPPRIS ALT2 TSL 2 BASIC19.09■□□□□ 0.65
USP11P51784 NINL-201ENST00000278886 4969 ntAPPRIS P3 TSL 1 (best) BASIC19.09■□□□□ 0.65
USP11P51784 OSBPL1A-204ENST00000399443 3317 ntTSL 1 (best) BASIC19.08■□□□□ 0.65
USP11P51784 ARHGAP9-204ENST00000430041 2323 ntAPPRIS ALT2 TSL 1 (best) BASIC19.08■□□□□ 0.65
USP11P51784 WDR90-209ENST00000547944 1672 ntTSL 2 BASIC19.08■□□□□ 0.65
USP11P51784 TTC24-202ENST00000368237 1969 ntAPPRIS P1 TSL 5 BASIC19.08■□□□□ 0.65
USP11P51784 CDIP1-207ENST00000564828 1636 ntTSL 1 (best) BASIC19.08■□□□□ 0.65
USP11P51784 WWC1-201ENST00000265293 7130 ntAPPRIS P3 TSL 1 (best) BASIC19.08■□□□□ 0.65
USP11P51784 KCTD2-201ENST00000322444 3635 ntAPPRIS P1 TSL 1 (best) BASIC19.08■□□□□ 0.65
USP11P51784 NAT9-201ENST00000357814 1875 ntTSL 1 (best) BASIC19.08■□□□□ 0.65
USP11P51784 OR6D1P-202ENST00000641007 5290 ntBASIC19.08■□□□□ 0.64
USP11P51784 PRCC-201ENST00000271526 2105 ntAPPRIS P1 TSL 1 (best) BASIC19.08■□□□□ 0.64
USP11P51784 SLC22A18-206ENST00000449793 1225 ntTSL 5 BASIC19.08■□□□□ 0.64
USP11P51784 CR559946.1-201ENST00000453835 531 ntTSL 4 BASIC19.08■□□□□ 0.64
USP11P51784 AC068137.2-201ENST00000605408 478 ntBASIC19.08■□□□□ 0.64
USP11P51784 SIRT1-201ENST00000212015 4094 ntAPPRIS P1 TSL 1 (best) BASIC19.08■□□□□ 0.64
USP11P51784 PDPK2P-201ENST00000382326 2387 ntTSL 1 (best) BASIC19.08■□□□□ 0.64
USP11P51784 FCHO1-201ENST00000252771 3118 ntAPPRIS P1 TSL 5 BASIC19.08■□□□□ 0.64
USP11P51784 ZNF57-201ENST00000306908 2003 ntAPPRIS P2 TSL 1 (best) BASIC19.08■□□□□ 0.64
USP11P51784 ZNF57-205ENST00000614108 2002 ntAPPRIS ALT2 TSL 5 BASIC19.08■□□□□ 0.64
USP11P51784 CNTNAP3-204ENST00000377656 4986 ntTSL 1 (best) BASIC19.08■□□□□ 0.64
USP11P51784 FBXO4-202ENST00000296812 1731 ntTSL 1 (best) BASIC19.08■□□□□ 0.64
USP11P51784 HNRNPLL-202ENST00000358367 2779 ntTSL 5 BASIC19.08■□□□□ 0.64
USP11P51784 PRODH-202ENST00000334029 1985 ntAPPRIS ALT2 TSL 1 (best) BASIC19.08■□□□□ 0.64
USP11P51784 CDK11B-207ENST00000626918 2457 ntTSL 5 BASIC19.08■□□□□ 0.64
USP11P51784 CDK11B-208ENST00000629289 2490 ntTSL 5 BASIC19.08■□□□□ 0.64
USP11P51784 CDK11B-209ENST00000629312 2496 ntTSL 5 BASIC19.08■□□□□ 0.64
USP11P51784 TADA1-201ENST00000367874 2159 ntAPPRIS P1 TSL 1 (best) BASIC19.08■□□□□ 0.64
USP11P51784 CHTOP-203ENST00000368690 2165 ntAPPRIS ALT1 TSL 1 (best) BASIC19.08■□□□□ 0.64
USP11P51784 COQ8A-201ENST00000366777 2872 ntAPPRIS P1 TSL 1 (best) BASIC19.07■□□□□ 0.64
USP11P51784 GPAT3-202ENST00000395226 2631 ntAPPRIS P1 TSL 1 (best) BASIC19.07■□□□□ 0.64
USP11P51784 PDE2A-226ENST00000544570 3119 ntTSL 5 BASIC19.07■□□□□ 0.64
USP11P51784 CD9-203ENST00000382518 1556 ntAPPRIS P1 TSL 5 BASIC19.07■□□□□ 0.64
USP11P51784 NSD3-201ENST00000316985 3995 ntTSL 1 (best) BASIC19.07■□□□□ 0.64
USP11P51784 RNF165-204ENST00000587853 2011 ntTSL 5 BASIC19.07■□□□□ 0.64
USP11P51784 ISLR2-201ENST00000361742 4817 ntAPPRIS P1 TSL 1 (best) BASIC19.07■□□□□ 0.64
USP11P51784 HSD17B6-203ENST00000554150 1547 ntAPPRIS P1 TSL 5 BASIC19.07■□□□□ 0.64
USP11P51784 TMEM143-202ENST00000377431 1960 ntTSL 1 (best) BASIC19.07■□□□□ 0.64
USP11P51784 SPACA4-201ENST00000321762 972 ntAPPRIS P1 BASIC19.07■□□□□ 0.64
USP11P51784 FAM19A5-204ENST00000406880 833 ntTSL 3 BASIC19.07■□□□□ 0.64
USP11P51784 DNAJB3-201ENST00000446806 729 ntBASIC19.07■□□□□ 0.64
USP11P51784 NECAP2-208ENST00000504551 768 ntTSL 5 BASIC19.07■□□□□ 0.64
USP11P51784 AC105202.1-202ENST00000522060 834 ntTSL 3 BASIC19.07■□□□□ 0.64
USP11P51784 AC116021.1-201ENST00000530049 653 ntTSL 3 BASIC19.07■□□□□ 0.64
USP11P51784 PTHLH-207ENST00000539239 890 ntAPPRIS ALT1 TSL 5 BASIC19.07■□□□□ 0.64
USP11P51784 AP002472.1-201ENST00000577490 586 ntBASIC19.07■□□□□ 0.64
USP11P51784 MIR3909-201ENST00000579518 119 ntBASIC19.07■□□□□ 0.64
USP11P51784 UBE3D-208ENST00000626828 114 ntTSL 5 BASIC19.07■□□□□ 0.64
USP11P51784 ACY1-212ENST00000635797 1294 ntTSL 5 BASIC19.07■□□□□ 0.64
USP11P51784 ZNF280D-205ENST00000559000 4726 ntAPPRIS ALT2 TSL 2 BASIC19.07■□□□□ 0.64
USP11P51784 MFSD2A-201ENST00000372809 2173 ntTSL 2 BASIC19.07■□□□□ 0.64
USP11P51784 N4BP3-201ENST00000274605 6080 ntAPPRIS P1 TSL 1 (best) BASIC19.07■□□□□ 0.64
USP11P51784 GYG1-201ENST00000296048 1890 ntAPPRIS P1 TSL 1 (best) BASIC19.07■□□□□ 0.64
USP11P51784 CD1D-201ENST00000368171 2253 ntAPPRIS P1 TSL 1 (best) BASIC19.07■□□□□ 0.64
USP11P51784 MIER1-206ENST00000371016 1802 ntTSL 1 (best) BASIC19.07■□□□□ 0.64
USP11P51784 FNDC8-201ENST00000158009 1388 ntAPPRIS P1 TSL 1 (best) BASIC19.06■□□□□ 0.64
USP11P51784 PSMD12-202ENST00000357146 2437 ntTSL 2 BASIC19.06■□□□□ 0.64
USP11P51784 TEX264-202ENST00000395057 1555 ntAPPRIS P3 TSL 1 (best) BASIC19.06■□□□□ 0.64
USP11P51784 TRIP10-201ENST00000313244 2153 ntTSL 1 (best) BASIC19.06■□□□□ 0.64
USP11P51784 FOSB-209ENST00000590335 2170 ntTSL 1 (best) BASIC19.06■□□□□ 0.64
USP11P51784 IFFO1-211ENST00000615885 2775 ntTSL 5 BASIC19.06■□□□□ 0.64
USP11P51784 STEAP3-204ENST00000409811 2103 ntTSL 1 (best) BASIC19.06■□□□□ 0.64
USP11P51784 CRTC3-201ENST00000268184 2537 ntAPPRIS P3 TSL 1 (best) BASIC19.06■□□□□ 0.64
USP11P51784 UBN1-201ENST00000262376 6252 ntAPPRIS P1 TSL 1 (best) BASIC19.06■□□□□ 0.64
USP11P51784 LINC00595-204ENST00000434974 2692 ntTSL 2 BASIC19.06■□□□□ 0.64
USP11P51784 RGN-203ENST00000397180 2257 ntAPPRIS P1 TSL 5 BASIC19.06■□□□□ 0.64
USP11P51784 TMEM42-201ENST00000302392 1026 ntAPPRIS P1 TSL 1 (best) BASIC19.06■□□□□ 0.64
USP11P51784 SMN1-201ENST00000351205 900 ntAPPRIS P3 TSL 1 (best) BASIC19.06■□□□□ 0.64
USP11P51784 SMN2-201ENST00000380741 900 ntAPPRIS P4 TSL 1 (best) BASIC19.06■□□□□ 0.64
USP11P51784 PMS2P4-201ENST00000412466 1052 ntBASIC19.06■□□□□ 0.64
USP11P51784 AL354836.1-201ENST00000414042 681 ntTSL 2 BASIC19.06■□□□□ 0.64
USP11P51784 PLA2G16-203ENST00000415826 1099 ntAPPRIS P1 TSL 2 BASIC19.06■□□□□ 0.64
USP11P51784 BX842568.4-201ENST00000421222 227 ntBASIC19.06■□□□□ 0.64
USP11P51784 RPP21-221ENST00000428040 594 ntTSL 2 BASIC19.06■□□□□ 0.64
USP11P51784 AP000695.1-201ENST00000429588 893 ntTSL 3 BASIC19.06■□□□□ 0.64
USP11P51784 RPP21-224ENST00000442966 525 ntAPPRIS P1 TSL 1 (best) BASIC19.06■□□□□ 0.64
USP11P51784 SIGLEC29P-201ENST00000599873 1114 ntBASIC19.06■□□□□ 0.64
USP11P51784 HOTTIP_1.1-201ENST00000620415 57 ntBASIC19.06■□□□□ 0.64
USP11P51784 C20orf181-201ENST00000623918 480 ntBASIC19.06■□□□□ 0.64
USP11P51784 SMN2-216ENST00000638794 846 ntAPPRIS ALT2 TSL 5 BASIC19.06■□□□□ 0.64
USP11P51784 PLA2G16-206ENST00000639271 957 ntTSL 5 BASIC19.06■□□□□ 0.64
USP11P51784 FBXW11-202ENST00000296933 4539 ntAPPRIS P1 TSL 1 (best) BASIC19.06■□□□□ 0.64
USP11P51784 CKMT2-202ENST00000424301 1637 ntAPPRIS P1 TSL 1 (best) BASIC19.06■□□□□ 0.64
USP11P51784 SDCBP-201ENST00000260130 2167 ntAPPRIS P3 TSL 1 (best) BASIC19.06■□□□□ 0.64
USP11P51784 SLC35E2B-204ENST00000614300 2156 ntTSL 1 (best) BASIC19.06■□□□□ 0.64
USP11P51784 SPECC1-203ENST00000395525 2536 ntTSL 1 (best) BASIC19.06■□□□□ 0.64
USP11P51784 AC022211.2-201ENST00000585075 2527 ntBASIC19.06■□□□□ 0.64
USP11P51784 SNX33P1-201ENST00000592116 1762 ntBASIC19.06■□□□□ 0.64
USP11P51784 FBXL7-202ENST00000504595 4562 ntAPPRIS P1 TSL 1 (best) BASIC19.06■□□□□ 0.64
USP11P51784 ACBD3-201ENST00000366812 3573 ntAPPRIS P1 TSL 1 (best) BASIC19.06■□□□□ 0.64
USP11P51784 GGT7-201ENST00000336431 2642 ntAPPRIS P1 TSL 1 (best) BASIC19.05■□□□□ 0.64
USP11P51784 CRKL-201ENST00000354336 5325 ntAPPRIS P1 TSL 1 (best) BASIC19.05■□□□□ 0.64
USP11P51784 TRPV4-205ENST00000537083 2436 ntTSL 1 (best) BASIC19.05■□□□□ 0.64
Retrieved 100 of 98,524 protein–RNA pairs in 29.2 ms