Protein–RNA interactions for Protein: P09341

CXCL1, Growth-regulated alpha protein, humanhuman

Predictions only

Length 107 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CXCL1P09341 PPP1R16B-201ENST00000299824 6251 ntAPPRIS P1 TSL 1 (best) BASIC13.19□□□□□ -0.3
CXCL1P09341 POLR2B-205ENST00000441246 3839 ntTSL 2 BASIC13.19□□□□□ -0.3
CXCL1P09341 SHH-201ENST00000297261 4454 ntAPPRIS P1 TSL 1 (best) BASIC13.19□□□□□ -0.3
CXCL1P09341 CCNY-202ENST00000339497 4630 ntTSL 1 (best) BASIC13.19□□□□□ -0.3
CXCL1P09341 MRPL57-201ENST00000309594 2246 ntAPPRIS P1 TSL 1 (best) BASIC13.19□□□□□ -0.3
CXCL1P09341 CLEC18A-209ENST00000615430 2215 ntAPPRIS P2 TSL 5 BASIC13.19□□□□□ -0.3
CXCL1P09341 CLEC18C-211ENST00000618957 2215 ntAPPRIS P2 TSL 5 BASIC13.19□□□□□ -0.3
CXCL1P09341 CLEC18B-205ENST00000619275 2215 ntAPPRIS ALT2 TSL 5 BASIC13.19□□□□□ -0.3
CXCL1P09341 TRAPPC11-202ENST00000357207 4435 ntTSL 1 (best) BASIC13.19□□□□□ -0.3
CXCL1P09341 C19orf48-201ENST00000345523 1503 ntAPPRIS P1 TSL 2 BASIC13.18□□□□□ -0.3
CXCL1P09341 ATG13-216ENST00000530500 2030 ntTSL 2 BASIC13.18□□□□□ -0.3
CXCL1P09341 APOPT1-201ENST00000409074 2523 ntAPPRIS P1 TSL 1 (best) BASIC13.18□□□□□ -0.3
CXCL1P09341 AL139300.1-201ENST00000472726 2505 ntAPPRIS P1 TSL 2 BASIC13.18□□□□□ -0.3
CXCL1P09341 TCP1-203ENST00000420894 1671 ntTSL 5 BASIC13.18□□□□□ -0.3
CXCL1P09341 STXBP5-207ENST00000546097 2160 ntTSL 1 (best) BASIC13.18□□□□□ -0.3
CXCL1P09341 PDE4C-207ENST00000594617 4655 ntAPPRIS P3 TSL 1 (best) BASIC13.18□□□□□ -0.3
CXCL1P09341 TMCO3-207ENST00000474393 2843 ntTSL 2 BASIC13.18□□□□□ -0.3
CXCL1P09341 ITGB2-206ENST00000397852 2769 ntAPPRIS P1 TSL 1 (best) BASIC13.18□□□□□ -0.3
CXCL1P09341 NRN1-201ENST00000244766 1624 ntAPPRIS P1 TSL 1 (best) BASIC13.18□□□□□ -0.3
CXCL1P09341 CYB561-219ENST00000584031 3200 ntTSL 2 BASIC13.18□□□□□ -0.3
CXCL1P09341 ADORA1-201ENST00000309502 2896 ntAPPRIS P1 TSL 1 (best) BASIC13.18□□□□□ -0.3
CXCL1P09341 CD1E-211ENST00000368166 1271 ntTSL 1 (best) BASIC13.18□□□□□ -0.3
CXCL1P09341 PMVK-201ENST00000368467 1280 ntAPPRIS P1 TSL 1 (best) BASIC13.18□□□□□ -0.3
CXCL1P09341 LCE2B-201ENST00000368780 612 ntAPPRIS P1 TSL 1 (best) BASIC13.18□□□□□ -0.3
CXCL1P09341 TSPAN4-209ENST00000409543 1031 ntAPPRIS P1 TSL 5 BASIC13.18□□□□□ -0.3
CXCL1P09341 CT47A4-201ENST00000415858 1298 ntAPPRIS P1 TSL 1 (best) BASIC13.18□□□□□ -0.3
CXCL1P09341 CT47A9-201ENST00000417256 1298 ntAPPRIS P1 TSL 1 (best) BASIC13.18□□□□□ -0.3
CXCL1P09341 CT47A6-201ENST00000419194 1298 ntAPPRIS P1 TSL 5 BASIC13.18□□□□□ -0.3
CXCL1P09341 LTB-210ENST00000429299 897 ntAPPRIS P1 TSL 1 (best) BASIC13.18□□□□□ -0.3
CXCL1P09341 CT47A10-201ENST00000430448 1298 ntAPPRIS P1 TSL 1 (best) BASIC13.18□□□□□ -0.3
CXCL1P09341 CT47A5-201ENST00000439466 1298 ntAPPRIS P1 TSL 1 (best) BASIC13.18□□□□□ -0.3
CXCL1P09341 DDX43P3-201ENST00000441064 443 ntBASIC13.18□□□□□ -0.3
CXCL1P09341 CT47A3-201ENST00000441330 1298 ntAPPRIS P1 TSL 1 (best) BASIC13.18□□□□□ -0.3
CXCL1P09341 AL445472.1-201ENST00000452532 1007 ntTSL 2 BASIC13.18□□□□□ -0.3
CXCL1P09341 AC013402.1-201ENST00000456999 561 ntTSL 4 BASIC13.18□□□□□ -0.3
CXCL1P09341 CT47A8-201ENST00000457977 1298 ntAPPRIS P1 TSL 1 (best) BASIC13.18□□□□□ -0.3
CXCL1P09341 CT47A2-201ENST00000458218 1298 ntAPPRIS P1 TSL 1 (best) BASIC13.18□□□□□ -0.3
CXCL1P09341 AC097488.1-201ENST00000507834 756 ntBASIC13.18□□□□□ -0.3
CXCL1P09341 MVB12A-204ENST00000528515 686 ntTSL 5 BASIC13.18□□□□□ -0.3
CXCL1P09341 AC027451.1-201ENST00000530667 553 ntTSL 4 BASIC13.18□□□□□ -0.3
CXCL1P09341 AC103855.2-201ENST00000533315 573 ntTSL 4 BASIC13.18□□□□□ -0.3
CXCL1P09341 NDUFS3-212ENST00000534208 583 ntTSL 4 BASIC13.18□□□□□ -0.3
CXCL1P09341 SIVA1-207ENST00000556195 674 ntTSL 3 BASIC13.18□□□□□ -0.3
CXCL1P09341 AC112497.1-201ENST00000624824 639 ntBASIC13.18□□□□□ -0.3
CXCL1P09341 C14orf93-202ENST00000341470 2221 ntTSL 1 (best) BASIC13.18□□□□□ -0.3
CXCL1P09341 PRX-201ENST00000291825 5502 ntAPPRIS P1 TSL 1 (best) BASIC13.18□□□□□ -0.3
CXCL1P09341 HES1-201ENST00000232424 1578 ntAPPRIS P1 TSL 1 (best) BASIC13.18□□□□□ -0.3
CXCL1P09341 PLXNB3-201ENST00000361971 6146 ntAPPRIS P3 TSL 1 (best) BASIC13.18□□□□□ -0.3
CXCL1P09341 CNOT6-207ENST00000618123 6250 ntAPPRIS P1 TSL 1 (best) BASIC13.18□□□□□ -0.3
CXCL1P09341 GRK6P1-201ENST00000400595 1711 ntBASIC13.18□□□□□ -0.3
CXCL1P09341 EVA1A-205ENST00000410113 1747 ntAPPRIS P2 TSL 3 BASIC13.18□□□□□ -0.3
CXCL1P09341 AHDC1-202ENST00000374011 6438 ntAPPRIS P1 TSL 5 BASIC13.18□□□□□ -0.3
CXCL1P09341 RNH1-204ENST00000397614 1864 ntAPPRIS P1 TSL 5 BASIC13.18□□□□□ -0.3
CXCL1P09341 POP4-201ENST00000221770 2321 ntTSL 1 (best) BASIC13.18□□□□□ -0.3
CXCL1P09341 DLX6-202ENST00000518156 2304 ntAPPRIS P2 TSL 1 (best) BASIC13.18□□□□□ -0.3
CXCL1P09341 ATP2A3-204ENST00000397035 4182 ntTSL 5 BASIC13.18□□□□□ -0.3
CXCL1P09341 APBB1-221ENST00000609360 2642 ntAPPRIS ALT1 TSL 5 BASIC13.18□□□□□ -0.3
CXCL1P09341 OR4D1-202ENST00000641449 4925 ntAPPRIS P1 BASIC13.18□□□□□ -0.3
CXCL1P09341 TMEM19-201ENST00000266673 5656 ntAPPRIS P1 TSL 1 (best) BASIC13.18□□□□□ -0.3
CXCL1P09341 RNASET2-214ENST00000620173 1391 ntTSL 5 BASIC13.18□□□□□ -0.3
CXCL1P09341 PM20D2-201ENST00000275072 4708 ntAPPRIS P1 TSL 1 (best) BASIC13.18□□□□□ -0.3
CXCL1P09341 TIMM8A-201ENST00000372902 1664 ntAPPRIS P1 TSL 1 (best) BASIC13.18□□□□□ -0.3
CXCL1P09341 TGIF1-205ENST00000401449 1670 ntTSL 2 BASIC13.18□□□□□ -0.3
CXCL1P09341 SLC39A6-202ENST00000440549 1657 ntAPPRIS ALT2 TSL 1 (best) BASIC13.18□□□□□ -0.3
CXCL1P09341 MCM3AP-AS1-203ENST00000421927 2280 ntTSL 2 BASIC13.18□□□□□ -0.3
CXCL1P09341 AL137784.3-201ENST00000623858 2288 ntBASIC13.18□□□□□ -0.3
CXCL1P09341 PPP1R37-201ENST00000221462 3163 ntAPPRIS P1 TSL 5 BASIC13.18□□□□□ -0.3
CXCL1P09341 VARS2-201ENST00000321897 4073 ntTSL 1 (best) BASIC13.18□□□□□ -0.3
CXCL1P09341 RBPJ-205ENST00000355476 5990 ntAPPRIS P3 TSL 1 (best) BASIC13.17□□□□□ -0.3
CXCL1P09341 ZNF713-202ENST00000429591 4339 ntAPPRIS P2 TSL 5 BASIC13.17□□□□□ -0.3
CXCL1P09341 GRSF1-208ENST00000545193 2682 ntTSL 2 BASIC13.17□□□□□ -0.3
CXCL1P09341 ACOX3-202ENST00000413009 2374 ntTSL 1 (best) BASIC13.17□□□□□ -0.3
CXCL1P09341 SOX14-201ENST00000306087 2055 ntAPPRIS P1 BASIC13.17□□□□□ -0.3
CXCL1P09341 RAP1GDS1-203ENST00000380158 2085 ntTSL 1 (best) BASIC13.17□□□□□ -0.3
CXCL1P09341 SBSN-201ENST00000452271 1945 ntAPPRIS ALT2 TSL 1 (best) BASIC13.17□□□□□ -0.3
CXCL1P09341 WDR6-222ENST00000615452 1949 ntTSL 5 BASIC13.17□□□□□ -0.3
CXCL1P09341 RBM12-201ENST00000359646 5332 ntAPPRIS P1 TSL 1 (best) BASIC13.17□□□□□ -0.3
CXCL1P09341 GATA3-202ENST00000379328 3078 ntAPPRIS ALT1 TSL 1 (best) BASIC13.17□□□□□ -0.3
CXCL1P09341 CCHCR1-201ENST00000376266 2625 ntAPPRIS P3 TSL 1 (best) BASIC13.17□□□□□ -0.3
CXCL1P09341 GRB7-205ENST00000445327 2197 ntTSL 2 BASIC13.17□□□□□ -0.3
CXCL1P09341 KATNBL1-201ENST00000256544 2723 ntAPPRIS P1 TSL 1 (best) BASIC13.17□□□□□ -0.3
CXCL1P09341 AC079781.5-202ENST00000641784 3743 ntBASIC13.17□□□□□ -0.3
CXCL1P09341 CASC3-201ENST00000264645 4116 ntAPPRIS P1 TSL 1 (best) BASIC13.17□□□□□ -0.3
CXCL1P09341 MRPL54-201ENST00000330133 626 ntAPPRIS P1 TSL 1 (best) BASIC13.17□□□□□ -0.3
CXCL1P09341 MRPL53-202ENST00000409710 386 ntTSL 2 BASIC13.17□□□□□ -0.3
CXCL1P09341 SMIM13-202ENST00000416247 4688 ntAPPRIS P1 TSL 1 (best) BASIC13.17□□□□□ -0.3
CXCL1P09341 NUDT16P1-203ENST00000513809 620 ntBASIC13.17□□□□□ -0.3
CXCL1P09341 AP005242.2-201ENST00000580065 1175 ntBASIC13.17□□□□□ -0.3
CXCL1P09341 CIRBP-217ENST00000588230 1013 ntTSL 5 BASIC13.17□□□□□ -0.3
CXCL1P09341 ATP5D-207ENST00000591660 637 ntAPPRIS P1 TSL 3 BASIC13.17□□□□□ -0.3
CXCL1P09341 GRAMD4P8-201ENST00000605465 1115 ntBASIC13.17□□□□□ -0.3
CXCL1P09341 RHOXF1P3-203ENST00000640298 2668 ntTSL 5 BASIC13.17□□□□□ -0.3
CXCL1P09341 PSD-209ENST00000611678 3382 ntTSL 1 (best) BASIC13.17□□□□□ -0.3
CXCL1P09341 UBAP1-202ENST00000359544 2535 ntAPPRIS P1 TSL 1 (best) BASIC13.17□□□□□ -0.3
CXCL1P09341 PAK6-203ENST00000542403 2540 ntAPPRIS P1 TSL 1 (best) BASIC13.17□□□□□ -0.3
CXCL1P09341 AP000439.3-201ENST00000545202 2376 ntTSL 2 BASIC13.17□□□□□ -0.3
CXCL1P09341 ARC-201ENST00000356613 2948 ntAPPRIS P1 TSL 1 (best) BASIC13.17□□□□□ -0.3
CXCL1P09341 STARD10-218ENST00000543304 1513 ntAPPRIS P1 TSL 1 (best) BASIC13.17□□□□□ -0.3
CXCL1P09341 MLLT10-203ENST00000377072 5126 ntAPPRIS P3 TSL 1 (best) BASIC13.17□□□□□ -0.3
CXCL1P09341 TTBK1-201ENST00000259750 6932 ntAPPRIS P1 TSL 1 (best) BASIC13.17□□□□□ -0.3
Retrieved 100 of 98,524 protein–RNA pairs in 30.7 ms