Protein–RNA interactions for Protein: Q9Y5I1

PCDHA11, Protocadherin alpha-11, humanhuman

Predictions only

Length 949 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
PCDHA11Q9Y5I1 MAST4-206ENST00000406374 1066 ntTSL 1 (best) BASIC26.35■■□□□ 1.81
PCDHA11Q9Y5I1 NDUFA10-204ENST00000407129 699 ntTSL 1 (best) BASIC26.35■■□□□ 1.81
PCDHA11Q9Y5I1 FAM72B-203ENST00000452190 748 ntTSL 3 BASIC26.35■■□□□ 1.81
PCDHA11Q9Y5I1 F8A3-201ENST00000622749 1759 ntAPPRIS P1 BASIC26.35■■□□□ 1.81
PCDHA11Q9Y5I1 AC073111.5-204ENST00000498682 1167 ntAPPRIS P1 TSL 2 BASIC26.34■■□□□ 1.81
PCDHA11Q9Y5I1 AL117209.1-201ENST00000560931 828 ntTSL 3 BASIC26.34■■□□□ 1.81
PCDHA11Q9Y5I1 CABP1-202ENST00000316803 1658 ntTSL 1 (best) BASIC26.34■■□□□ 1.81
PCDHA11Q9Y5I1 PDK1-202ENST00000392571 1515 ntAPPRIS ALT2 TSL 1 (best) BASIC26.34■■□□□ 1.81
PCDHA11Q9Y5I1 LACTB-201ENST00000261893 1972 ntAPPRIS P1 TSL 1 (best) BASIC26.33■■□□□ 1.81
PCDHA11Q9Y5I1 GGH-201ENST00000260118 1607 ntAPPRIS P1 TSL 1 (best) BASIC26.33■■□□□ 1.81
PCDHA11Q9Y5I1 BRI3-201ENST00000297290 780 ntAPPRIS P1 TSL 1 (best) BASIC26.33■■□□□ 1.81
PCDHA11Q9Y5I1 CLTB-201ENST00000310418 1215 ntAPPRIS P4 TSL 1 (best) BASIC26.33■■□□□ 1.81
PCDHA11Q9Y5I1 KRT18P24-201ENST00000344739 1156 ntBASIC26.33■■□□□ 1.81
PCDHA11Q9Y5I1 CLTB-202ENST00000345807 1161 ntAPPRIS ALT1 TSL 1 (best) BASIC26.33■■□□□ 1.81
PCDHA11Q9Y5I1 CDKN2A-207ENST00000497750 565 ntTSL 4 BASIC26.33■■□□□ 1.81
PCDHA11Q9Y5I1 CALM1-203ENST00000544280 1064 ntTSL 1 (best) BASIC26.33■■□□□ 1.81
PCDHA11Q9Y5I1 CDKN2A-212ENST00000578845 678 ntTSL 2 BASIC26.33■■□□□ 1.81
PCDHA11Q9Y5I1 MTERF3-204ENST00000523821 1529 ntTSL 1 (best) BASIC26.33■■□□□ 1.81
PCDHA11Q9Y5I1 TM6SF1-204ENST00000379390 1638 ntTSL 1 (best) BASIC26.32■■□□□ 1.8
PCDHA11Q9Y5I1 SETBP1-202ENST00000426838 1785 ntAPPRIS ALT2 TSL 1 (best) BASIC26.31■■□□□ 1.8
PCDHA11Q9Y5I1 SAE1-209ENST00000598840 1831 ntTSL 5 BASIC26.31■■□□□ 1.8
PCDHA11Q9Y5I1 TMEM134-202ENST00000393877 823 ntTSL 1 (best) BASIC26.31■■□□□ 1.8
PCDHA11Q9Y5I1 AC137630.3-201ENST00000607245 391 ntBASIC26.31■■□□□ 1.8
PCDHA11Q9Y5I1 NECAB2-201ENST00000305202 1608 ntAPPRIS P1 TSL 1 (best) BASIC26.31■■□□□ 1.8
PCDHA11Q9Y5I1 DRD5P2-201ENST00000421395 2012 ntBASIC26.31■■□□□ 1.8
PCDHA11Q9Y5I1 FKBP1A-211ENST00000618612 1518 ntTSL 1 (best) BASIC26.3■■□□□ 1.8
PCDHA11Q9Y5I1 CTAG1B-202ENST00000359887 998 ntTSL 2 BASIC26.3■■□□□ 1.8
PCDHA11Q9Y5I1 PCGF3-202ENST00000400151 1175 ntTSL 2 BASIC26.3■■□□□ 1.8
PCDHA11Q9Y5I1 TSPY9P-201ENST00000440215 945 ntBASIC26.3■■□□□ 1.8
PCDHA11Q9Y5I1 TSPY11P-201ENST00000442607 1045 ntBASIC26.3■■□□□ 1.8
PCDHA11Q9Y5I1 MNX1-201ENST00000252971 2174 ntAPPRIS P3 TSL 1 (best) BASIC26.3■■□□□ 1.8
PCDHA11Q9Y5I1 R3HCC1-202ENST00000411463 1467 ntAPPRIS P5 TSL 5 BASIC26.3■■□□□ 1.8
PCDHA11Q9Y5I1 WHAMMP3-201ENST00000611636 1609 ntBASIC26.29■■□□□ 1.8
PCDHA11Q9Y5I1 MIR663AHG-227ENST00000608084 765 ntTSL 5 BASIC26.29■■□□□ 1.8
PCDHA11Q9Y5I1 LINC01881-206ENST00000614114 957 ntTSL 2 BASIC26.29■■□□□ 1.8
PCDHA11Q9Y5I1 SLC39A2-201ENST00000298681 1379 ntAPPRIS P1 TSL 1 (best) BASIC26.29■■□□□ 1.8
PCDHA11Q9Y5I1 CCND3-203ENST00000372991 2085 ntAPPRIS P1 TSL 1 (best) BASIC26.29■■□□□ 1.8
PCDHA11Q9Y5I1 ADAMTSL5-202ENST00000395467 1533 ntTSL 5 BASIC26.29■■□□□ 1.8
PCDHA11Q9Y5I1 RCCD1-206ENST00000556618 1556 ntAPPRIS P2 TSL 5 BASIC26.29■■□□□ 1.8
PCDHA11Q9Y5I1 ZNF775-201ENST00000329630 2257 ntAPPRIS P1 TSL 1 (best) BASIC26.28■■□□□ 1.8
PCDHA11Q9Y5I1 SP8-202ENST00000418710 1618 ntAPPRIS ALT2 TSL 1 (best) BASIC26.28■■□□□ 1.8
PCDHA11Q9Y5I1 TMEM200C-201ENST00000383490 1920 ntAPPRIS P1 BASIC26.28■■□□□ 1.8
PCDHA11Q9Y5I1 CLK2-201ENST00000355560 2120 ntAPPRIS ALT1 TSL 5 BASIC26.28■■□□□ 1.8
PCDHA11Q9Y5I1 MDK-202ENST00000395565 951 ntAPPRIS P2 TSL 2 BASIC26.28■■□□□ 1.8
PCDHA11Q9Y5I1 AC131281.2-201ENST00000520478 145 ntBASIC26.28■■□□□ 1.8
PCDHA11Q9Y5I1 TRIR-202ENST00000588213 841 ntTSL 3 BASIC26.28■■□□□ 1.8
PCDHA11Q9Y5I1 PPP1R14A-205ENST00000591585 949 ntTSL 2 BASIC26.28■■□□□ 1.8
PCDHA11Q9Y5I1 ERO1A-211ENST00000629528 998 ntTSL 5 BASIC26.28■■□□□ 1.8
PCDHA11Q9Y5I1 PKIB-205ENST00000368452 1398 ntAPPRIS P1 TSL 1 (best) BASIC26.28■■□□□ 1.8
PCDHA11Q9Y5I1 KRT18P10-201ENST00000388836 1287 ntBASIC26.27■■□□□ 1.8
PCDHA11Q9Y5I1 EGFL8-219ENST00000333845 1310 ntAPPRIS P1 TSL 1 (best) BASIC26.27■■□□□ 1.8
PCDHA11Q9Y5I1 AC021242.3-201ENST00000607598 1377 ntBASIC26.27■■□□□ 1.8
PCDHA11Q9Y5I1 TBCC-201ENST00000372876 1616 ntAPPRIS P1 BASIC26.27■■□□□ 1.8
PCDHA11Q9Y5I1 ST6GALNAC6-205ENST00000373146 2460 ntAPPRIS P3 TSL 1 (best) BASIC26.26■■□□□ 1.79
PCDHA11Q9Y5I1 COMMD7-201ENST00000278980 1900 ntAPPRIS P3 TSL 1 (best) BASIC26.26■■□□□ 1.79
PCDHA11Q9Y5I1 RALY-201ENST00000246194 1789 ntAPPRIS P4 TSL 1 (best) BASIC26.26■■□□□ 1.79
PCDHA11Q9Y5I1 VSTM2L-201ENST00000373459 831 ntTSL 3 BASIC26.26■■□□□ 1.79
PCDHA11Q9Y5I1 MAST4-205ENST00000406039 717 ntTSL 1 (best) BASIC26.26■■□□□ 1.79
PCDHA11Q9Y5I1 TMEM187-201ENST00000369982 1880 ntAPPRIS P1 TSL 1 (best) BASIC26.25■■□□□ 1.79
PCDHA11Q9Y5I1 NFYB-205ENST00000551727 1727 ntAPPRIS P1 TSL 3 BASIC26.25■■□□□ 1.79
PCDHA11Q9Y5I1 RUNX1-205ENST00000399240 1590 ntTSL 3 BASIC26.25■■□□□ 1.79
PCDHA11Q9Y5I1 FEZ1-202ENST00000366139 1053 ntTSL 2 BASIC26.25■■□□□ 1.79
PCDHA11Q9Y5I1 GUCD1-202ENST00000402766 865 ntTSL 2 BASIC26.25■■□□□ 1.79
PCDHA11Q9Y5I1 RPP21-222ENST00000433076 577 ntTSL 2 BASIC26.25■■□□□ 1.79
PCDHA11Q9Y5I1 SERTAD4-AS1-202ENST00000475406 591 ntTSL 2 BASIC26.25■■□□□ 1.79
PCDHA11Q9Y5I1 ERGIC1-206ENST00000519860 1000 ntTSL 3 BASIC26.25■■□□□ 1.79
PCDHA11Q9Y5I1 GSX1-201ENST00000302945 1663 ntAPPRIS P1 TSL 1 (best) BASIC26.25■■□□□ 1.79
PCDHA11Q9Y5I1 MTNR1B-201ENST00000257068 1565 ntAPPRIS P1 TSL 1 (best) BASIC26.24■■□□□ 1.79
PCDHA11Q9Y5I1 PPAN-202ENST00000393793 1575 ntTSL 5 BASIC26.24■■□□□ 1.79
PCDHA11Q9Y5I1 LDLRAD3-203ENST00000528989 1879 ntTSL 1 (best) BASIC26.24■■□□□ 1.79
PCDHA11Q9Y5I1 RBFA-201ENST00000262197 1219 ntTSL 1 (best) BASIC26.24■■□□□ 1.79
PCDHA11Q9Y5I1 C4orf36-201ENST00000295898 881 ntAPPRIS P1 TSL 1 (best) BASIC26.24■■□□□ 1.79
PCDHA11Q9Y5I1 PYCARD-202ENST00000350605 696 ntTSL 1 (best) BASIC26.24■■□□□ 1.79
PCDHA11Q9Y5I1 SRR-208ENST00000576848 588 ntTSL 4 BASIC26.24■■□□□ 1.79
PCDHA11Q9Y5I1 FP236240.1-201ENST00000619537 1116 ntAPPRIS P1 TSL 1 (best) BASIC26.24■■□□□ 1.79
PCDHA11Q9Y5I1 GABRA5-203ENST00000400081 2761 ntAPPRIS P1 TSL 5 BASIC26.24■■□□□ 1.79
PCDHA11Q9Y5I1 SLC35A1-203ENST00000369557 1653 ntTSL 2 BASIC26.24■■□□□ 1.79
PCDHA11Q9Y5I1 RMI2-201ENST00000312499 1457 ntAPPRIS P1 TSL 1 (best) BASIC26.23■■□□□ 1.79
PCDHA11Q9Y5I1 KAZN-207ENST00000503743 1475 ntTSL 1 (best) BASIC26.23■■□□□ 1.79
PCDHA11Q9Y5I1 EFEMP2-201ENST00000307998 2034 ntAPPRIS P1 TSL 1 (best) BASIC26.23■■□□□ 1.79
PCDHA11Q9Y5I1 MED22-201ENST00000343730 1437 ntAPPRIS P4 TSL 1 (best) BASIC26.22■■□□□ 1.79
PCDHA11Q9Y5I1 CHST14-202ENST00000559991 1968 ntTSL 5 BASIC26.22■■□□□ 1.79
PCDHA11Q9Y5I1 CACNG6-203ENST00000352529 1635 ntTSL 5 BASIC26.22■■□□□ 1.79
PCDHA11Q9Y5I1 HOOK2-201ENST00000264827 2603 ntAPPRIS P1 TSL 1 (best) BASIC26.22■■□□□ 1.79
PCDHA11Q9Y5I1 SDCCAG3-201ENST00000298537 2314 ntTSL 1 (best) BASIC26.22■■□□□ 1.79
PCDHA11Q9Y5I1 HTRA2-202ENST00000352222 1450 ntTSL 1 (best) BASIC26.22■■□□□ 1.79
PCDHA11Q9Y5I1 F8A1-201ENST00000610495 1713 ntAPPRIS P1 BASIC26.22■■□□□ 1.79
PCDHA11Q9Y5I1 FAM117A-201ENST00000240364 2365 ntAPPRIS P2 TSL 1 (best) BASIC26.21■■□□□ 1.79
PCDHA11Q9Y5I1 NELFB-202ENST00000634710 1887 ntAPPRIS P2 TSL 1 (best) BASIC26.21■■□□□ 1.79
PCDHA11Q9Y5I1 AL136116.3-201ENST00000402907 1138 ntBASIC26.21■■□□□ 1.79
PCDHA11Q9Y5I1 CTDSP2-203ENST00000547701 988 ntTSL 1 (best) BASIC26.21■■□□□ 1.79
PCDHA11Q9Y5I1 CDH24-206ENST00000610348 2037 ntTSL 1 (best) BASIC26.21■■□□□ 1.79
PCDHA11Q9Y5I1 KRTAP5-1-201ENST00000382171 942 ntAPPRIS P1 BASIC26.2■■□□□ 1.78
PCDHA11Q9Y5I1 HMGA2-202ENST00000393577 611 ntTSL 3 BASIC26.2■■□□□ 1.78
PCDHA11Q9Y5I1 FAM136A-202ENST00000430566 885 ntTSL 3 BASIC26.2■■□□□ 1.78
PCDHA11Q9Y5I1 AC092849.1-201ENST00000475250 303 ntTSL 4 BASIC26.2■■□□□ 1.78
PCDHA11Q9Y5I1 AC092028.1-203ENST00000608262 953 ntBASIC26.2■■□□□ 1.78
PCDHA11Q9Y5I1 CPSF4-207ENST00000451876 1644 ntTSL 5 BASIC26.2■■□□□ 1.78
PCDHA11Q9Y5I1 HOMER3-203ENST00000433218 1418 ntAPPRIS ALT1 TSL 5 BASIC26.2■■□□□ 1.78
PCDHA11Q9Y5I1 ZNF180-205ENST00000587047 525 ntTSL 4 BASIC26.19■■□□□ 1.78
Retrieved 100 of 98,524 protein–RNA pairs in 19.9 ms