Protein–RNA interactions for Protein: Q9Y2R2

PTPN22, Tyrosine-protein phosphatase non-receptor type 22, humanhuman

Predictions only

Length 807 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
PTPN22Q9Y2R2 NECAB2-201ENST00000305202 1608 ntAPPRIS P1 TSL 1 (best) BASIC27.85■■■□□ 2.05
PTPN22Q9Y2R2 FAM173A-201ENST00000219535 806 ntAPPRIS ALT2 TSL 2 BASIC27.84■■■□□ 2.05
PTPN22Q9Y2R2 LIN7B-202ENST00000391864 582 ntTSL 3 BASIC27.84■■■□□ 2.05
PTPN22Q9Y2R2 TOLLIP-208ENST00000527938 549 ntTSL 4 BASIC27.84■■■□□ 2.05
PTPN22Q9Y2R2 AC133561.4-201ENST00000566112 224 ntBASIC27.84■■■□□ 2.05
PTPN22Q9Y2R2 AC092028.1-203ENST00000608262 953 ntBASIC27.84■■■□□ 2.05
PTPN22Q9Y2R2 PQLC1-203ENST00000397778 2555 ntAPPRIS P3 TSL 1 (best) BASIC27.84■■■□□ 2.05
PTPN22Q9Y2R2 AGAP1-202ENST00000336665 5427 ntAPPRIS P3 TSL 1 (best) BASIC27.83■■■□□ 2.05
PTPN22Q9Y2R2 FKBP1A-211ENST00000618612 1518 ntTSL 1 (best) BASIC27.83■■■□□ 2.05
PTPN22Q9Y2R2 GUK1-205ENST00000366722 850 ntTSL 3 BASIC27.82■■■□□ 2.04
PTPN22Q9Y2R2 AC092849.1-201ENST00000475250 303 ntTSL 4 BASIC27.82■■■□□ 2.04
PTPN22Q9Y2R2 NKIRAS2-209ENST00000479407 992 ntTSL 3 BASIC27.82■■■□□ 2.04
PTPN22Q9Y2R2 SHOX2-204ENST00000483851 1866 ntAPPRIS ALT2 TSL 2 BASIC27.81■■■□□ 2.04
PTPN22Q9Y2R2 EMC10-202ENST00000376918 2014 ntAPPRIS ALT2 TSL 1 (best) BASIC27.81■■■□□ 2.04
PTPN22Q9Y2R2 TNFRSF25-201ENST00000348333 1119 ntTSL 1 (best) BASIC27.81■■■□□ 2.04
PTPN22Q9Y2R2 TNFRSF25-202ENST00000351748 705 ntTSL 1 (best) BASIC27.81■■■□□ 2.04
PTPN22Q9Y2R2 ARPC4-208ENST00000498623 942 ntTSL 2 BASIC27.81■■■□□ 2.04
PTPN22Q9Y2R2 AL117332.1-201ENST00000622628 974 ntBASIC27.81■■■□□ 2.04
PTPN22Q9Y2R2 MYCL-202ENST00000372816 1688 ntAPPRIS P3 TSL 2 BASIC27.81■■■□□ 2.04
PTPN22Q9Y2R2 SLC52A2-201ENST00000329994 1896 ntAPPRIS P1 TSL 1 (best) BASIC27.81■■■□□ 2.04
PTPN22Q9Y2R2 ST7-AS1-201ENST00000456775 1889 ntBASIC27.81■■■□□ 2.04
PTPN22Q9Y2R2 VWA1-201ENST00000338660 2147 ntTSL 2 BASIC27.8■■■□□ 2.04
PTPN22Q9Y2R2 CTDSP2-203ENST00000547701 988 ntTSL 1 (best) BASIC27.8■■■□□ 2.04
PTPN22Q9Y2R2 ZNF180-205ENST00000587047 525 ntTSL 4 BASIC27.8■■■□□ 2.04
PTPN22Q9Y2R2 FP236240.1-201ENST00000619537 1116 ntAPPRIS P1 TSL 1 (best) BASIC27.8■■■□□ 2.04
PTPN22Q9Y2R2 SLC39A2-201ENST00000298681 1379 ntAPPRIS P1 TSL 1 (best) BASIC27.8■■■□□ 2.04
PTPN22Q9Y2R2 TSPAN33-201ENST00000486685 1863 ntAPPRIS P1 TSL 1 (best) BASIC27.8■■■□□ 2.04
PTPN22Q9Y2R2 FAM228B-208ENST00000613899 1238 ntAPPRIS ALT2 TSL 1 (best) BASIC27.79■■■□□ 2.04
PTPN22Q9Y2R2 CERS2-205ENST00000368954 2505 ntAPPRIS P1 TSL 1 (best) BASIC27.78■■■□□ 2.04
PTPN22Q9Y2R2 EBPL-204ENST00000378272 766 ntTSL 3 BASIC27.78■■■□□ 2.04
PTPN22Q9Y2R2 AC090587.2-201ENST00000430222 527 ntTSL 2 BASIC27.78■■■□□ 2.04
PTPN22Q9Y2R2 MIR3621-201ENST00000580529 85 ntBASIC27.78■■■□□ 2.04
PTPN22Q9Y2R2 PPP1R14A-204ENST00000591291 433 ntTSL 5 BASIC27.78■■■□□ 2.04
PTPN22Q9Y2R2 TMC6-218ENST00000591436 1155 ntTSL 1 (best) BASIC27.78■■■□□ 2.04
PTPN22Q9Y2R2 GAL3ST1-205ENST00000406361 1819 ntAPPRIS P1 TSL 2 BASIC27.78■■■□□ 2.04
PTPN22Q9Y2R2 PDPK1-203ENST00000389224 2416 ntTSL 2 BASIC27.78■■■□□ 2.04
PTPN22Q9Y2R2 TPRA1-209ENST00000489960 1903 ntAPPRIS P1 TSL 5 BASIC27.77■■■□□ 2.04
PTPN22Q9Y2R2 NAXE-201ENST00000368233 1012 ntTSL 2 BASIC27.77■■■□□ 2.04
PTPN22Q9Y2R2 ZNRF2P3-201ENST00000424200 374 ntBASIC27.77■■■□□ 2.04
PTPN22Q9Y2R2 SLC16A10-206ENST00000612036 1231 ntTSL 5 BASIC27.77■■■□□ 2.04
PTPN22Q9Y2R2 TM6SF1-202ENST00000322019 2074 ntAPPRIS P1 TSL 1 (best) BASIC27.77■■■□□ 2.04
PTPN22Q9Y2R2 RCCD1-206ENST00000556618 1556 ntAPPRIS P2 TSL 5 BASIC27.77■■■□□ 2.04
PTPN22Q9Y2R2 ARL8A-201ENST00000272217 1793 ntAPPRIS P1 TSL 1 (best) BASIC27.76■■■□□ 2.03
PTPN22Q9Y2R2 FZD2-201ENST00000315323 2112 ntAPPRIS P1 BASIC27.76■■■□□ 2.03
PTPN22Q9Y2R2 NAA30-203ENST00000555166 1294 ntAPPRIS ALT2 TSL 2 BASIC27.76■■■□□ 2.03
PTPN22Q9Y2R2 NEUROG3-201ENST00000242462 1376 ntAPPRIS P1 TSL 1 (best) BASIC27.75■■■□□ 2.03
PTPN22Q9Y2R2 CLDN15-201ENST00000308344 1370 ntAPPRIS P1 TSL 1 (best) BASIC27.75■■■□□ 2.03
PTPN22Q9Y2R2 TM6SF1-204ENST00000379390 1638 ntTSL 1 (best) BASIC27.75■■■□□ 2.03
PTPN22Q9Y2R2 LY6H-205ENST00000615409 980 ntAPPRIS P3 TSL 1 (best) BASIC27.75■■■□□ 2.03
PTPN22Q9Y2R2 MED22-201ENST00000343730 1437 ntAPPRIS P4 TSL 1 (best) BASIC27.75■■■□□ 2.03
PTPN22Q9Y2R2 AC105935.1-201ENST00000424174 422 ntTSL 3 BASIC27.74■■■□□ 2.03
PTPN22Q9Y2R2 TSPAN17-204ENST00000503045 1019 ntTSL 5 BASIC27.74■■■□□ 2.03
PTPN22Q9Y2R2 MMP25-AS1-209ENST00000576250 779 ntTSL 5 BASIC27.74■■■□□ 2.03
PTPN22Q9Y2R2 RTN4R-201ENST00000043402 2157 ntAPPRIS P2 TSL 1 (best) BASIC27.74■■■□□ 2.03
PTPN22Q9Y2R2 ZIC2-201ENST00000376335 2983 ntAPPRIS P1 TSL 1 (best) BASIC27.74■■■□□ 2.03
PTPN22Q9Y2R2 SECTM1-201ENST00000269389 2235 ntAPPRIS P2 TSL 1 (best) BASIC27.73■■■□□ 2.03
PTPN22Q9Y2R2 FHL2-202ENST00000344213 1769 ntTSL 1 (best) BASIC27.73■■■□□ 2.03
PTPN22Q9Y2R2 WDSUB1-205ENST00000409990 1920 ntAPPRIS P1 TSL 2 BASIC27.73■■■□□ 2.03
PTPN22Q9Y2R2 EMC9-201ENST00000216799 835 ntAPPRIS P1 TSL 1 (best) BASIC27.73■■■□□ 2.03
PTPN22Q9Y2R2 SENCR-201ENST00000526269 1298 ntTSL 1 (best) BASIC27.73■■■□□ 2.03
PTPN22Q9Y2R2 WHAMMP3-201ENST00000611636 1609 ntBASIC27.72■■■□□ 2.03
PTPN22Q9Y2R2 AC026271.2-201ENST00000428091 497 ntBASIC27.72■■■□□ 2.03
PTPN22Q9Y2R2 LINC00472-204ENST00000436803 667 ntTSL 5 BASIC27.72■■■□□ 2.03
PTPN22Q9Y2R2 AC120024.1-201ENST00000562672 995 ntBASIC27.72■■■□□ 2.03
PTPN22Q9Y2R2 MIR4466-201ENST00000606121 54 ntBASIC27.72■■■□□ 2.03
PTPN22Q9Y2R2 GBX1-201ENST00000297537 1092 ntAPPRIS P1 TSL 1 (best) BASIC27.71■■■□□ 2.03
PTPN22Q9Y2R2 PRELID1-201ENST00000303204 1261 ntAPPRIS P1 TSL 1 (best) BASIC27.71■■■□□ 2.03
PTPN22Q9Y2R2 YTHDF1-201ENST00000370334 747 ntTSL 3 BASIC27.71■■■□□ 2.03
PTPN22Q9Y2R2 AC104564.3-201ENST00000582367 638 ntBASIC27.71■■■□□ 2.03
PTPN22Q9Y2R2 PRSS21-201ENST00000005995 1101 ntAPPRIS P1 TSL 1 (best) BASIC27.71■■■□□ 2.03
PTPN22Q9Y2R2 RCC1L-201ENST00000610322 2300 ntAPPRIS P1 TSL 1 (best) BASIC27.71■■■□□ 2.03
PTPN22Q9Y2R2 HIST2H3C-201ENST00000369158 1656 ntAPPRIS P1 BASIC27.71■■■□□ 2.03
PTPN22Q9Y2R2 HIST2H3A-201ENST00000403683 1656 ntAPPRIS P1 BASIC27.71■■■□□ 2.03
PTPN22Q9Y2R2 CCDC88C-205ENST00000553403 1651 ntTSL 1 (best) BASIC27.71■■■□□ 2.03
PTPN22Q9Y2R2 PDK1-202ENST00000392571 1515 ntAPPRIS ALT2 TSL 1 (best) BASIC27.71■■■□□ 2.03
PTPN22Q9Y2R2 AGFG1-205ENST00000409979 2089 ntAPPRIS ALT1 TSL 5 BASIC27.71■■■□□ 2.03
PTPN22Q9Y2R2 TNFRSF25-205ENST00000377782 1632 ntAPPRIS P4 TSL 1 (best) BASIC27.7■■■□□ 2.03
PTPN22Q9Y2R2 SP8-202ENST00000418710 1618 ntAPPRIS ALT2 TSL 1 (best) BASIC27.7■■■□□ 2.03
PTPN22Q9Y2R2 AP002414.2-202ENST00000590929 1450 ntBASIC27.7■■■□□ 2.03
PTPN22Q9Y2R2 CBR3-201ENST00000290354 1169 ntAPPRIS P1 TSL 1 (best) BASIC27.7■■■□□ 2.02
PTPN22Q9Y2R2 HTR6-201ENST00000289753 1984 ntAPPRIS P1 TSL 1 (best) BASIC27.69■■■□□ 2.02
PTPN22Q9Y2R2 CABP1-202ENST00000316803 1658 ntTSL 1 (best) BASIC27.69■■■□□ 2.02
PTPN22Q9Y2R2 ATF4-201ENST00000337304 2019 ntAPPRIS P1 TSL 1 (best) BASIC27.69■■■□□ 2.02
PTPN22Q9Y2R2 RBFA-201ENST00000262197 1219 ntTSL 1 (best) BASIC27.69■■■□□ 2.02
PTPN22Q9Y2R2 AP2S1-201ENST00000263270 935 ntAPPRIS P3 TSL 1 (best) BASIC27.69■■■□□ 2.02
PTPN22Q9Y2R2 RNF225-201ENST00000601382 990 ntAPPRIS P1 BASIC27.69■■■□□ 2.02
PTPN22Q9Y2R2 AL117336.3-202ENST00000605499 489 ntTSL 3 BASIC27.69■■■□□ 2.02
PTPN22Q9Y2R2 AC010997.5-201ENST00000609182 354 ntBASIC27.69■■■□□ 2.02
PTPN22Q9Y2R2 RUNX1-205ENST00000399240 1590 ntTSL 3 BASIC27.69■■■□□ 2.02
PTPN22Q9Y2R2 PPP1CC-208ENST00000551676 1581 ntTSL 2 BASIC27.69■■■□□ 2.02
PTPN22Q9Y2R2 CPSF4-207ENST00000451876 1644 ntTSL 5 BASIC27.68■■■□□ 2.02
PTPN22Q9Y2R2 NEUROG2-201ENST00000313341 2287 ntAPPRIS P1 TSL 1 (best) BASIC27.68■■■□□ 2.02
PTPN22Q9Y2R2 P2RX2-202ENST00000348800 1222 ntAPPRIS ALT2 TSL 1 (best) BASIC27.68■■■□□ 2.02
PTPN22Q9Y2R2 P2RX2-204ENST00000351222 1140 ntTSL 1 (best) BASIC27.68■■■□□ 2.02
PTPN22Q9Y2R2 EIF6-201ENST00000374436 1252 ntAPPRIS P1 TSL 1 (best) BASIC27.68■■■□□ 2.02
PTPN22Q9Y2R2 FAM136A-202ENST00000430566 885 ntTSL 3 BASIC27.68■■■□□ 2.02
PTPN22Q9Y2R2 P2RX2-207ENST00000449132 1113 ntTSL 1 (best) BASIC27.68■■■□□ 2.02
PTPN22Q9Y2R2 MIR6724-1-201ENST00000616420 92 ntBASIC27.68■■■□□ 2.02
PTPN22Q9Y2R2 MIR6724-2-201ENST00000616483 92 ntBASIC27.68■■■□□ 2.02
PTPN22Q9Y2R2 MIR6724-4-201ENST00000617390 92 ntBASIC27.68■■■□□ 2.02
Retrieved 100 of 98,524 protein–RNA pairs in 129.1 ms