Protein–RNA interactions for Protein: Q9BYB0

SHANK3, SH3 and multiple ankyrin repeat domains protein 3, humanhuman

Predictions only

Length 1,731 aa.

Download Table  
Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SHANK3Q9BYB0 SYCE1-204ENST00000432597 1254 ntAPPRIS ALT2 TSL 1 (best) BASIC31.79■■■□□ 2.68
SHANK3Q9BYB0 AC079305.3-201ENST00000455416 218 ntTSL 5 BASIC31.79■■■□□ 2.68
SHANK3Q9BYB0 CLIC3-203ENST00000494426 1017 ntAPPRIS P1 TSL 1 (best) BASIC31.79■■■□□ 2.68
SHANK3Q9BYB0 CHTF8-205ENST00000519520 856 ntTSL 2 BASIC31.79■■■□□ 2.68
SHANK3Q9BYB0 CTF1-201ENST00000279804 1664 ntAPPRIS P3 TSL 1 (best) BASIC31.79■■■□□ 2.68
SHANK3Q9BYB0 MXD3-201ENST00000423571 1534 ntTSL 2 BASIC31.79■■■□□ 2.68
SHANK3Q9BYB0 SLC25A1-202ENST00000451283 1514 ntTSL 2 BASIC31.79■■■□□ 2.68
SHANK3Q9BYB0 KRT125P-201ENST00000546827 989 ntBASIC31.78■■■□□ 2.68
SHANK3Q9BYB0 CASP9-201ENST00000333868 2019 ntAPPRIS P2 TSL 1 (best) BASIC31.78■■■□□ 2.68
SHANK3Q9BYB0 HMX3-201ENST00000357878 1173 ntAPPRIS P1 TSL 2 BASIC31.78■■■□□ 2.68
SHANK3Q9BYB0 COMMD7-201ENST00000278980 1900 ntAPPRIS P3 TSL 1 (best) BASIC31.77■■■□□ 2.68
SHANK3Q9BYB0 CPTP-201ENST00000343938 2190 ntAPPRIS P1 TSL 2 BASIC31.77■■■□□ 2.68
SHANK3Q9BYB0 BRI3-201ENST00000297290 780 ntAPPRIS P1 TSL 1 (best) BASIC31.77■■■□□ 2.68
SHANK3Q9BYB0 AC137630.3-201ENST00000607245 391 ntBASIC31.77■■■□□ 2.68
SHANK3Q9BYB0 HTRA2-202ENST00000352222 1450 ntTSL 1 (best) BASIC31.77■■■□□ 2.68
SHANK3Q9BYB0 LINC01003-201ENST00000564834 1764 ntBASIC31.77■■■□□ 2.68
SHANK3Q9BYB0 KRT18P24-201ENST00000344739 1156 ntBASIC31.76■■■□□ 2.67
SHANK3Q9BYB0 C11orf91-201ENST00000379011 811 ntAPPRIS P1 TSL 1 (best) BASIC31.76■■■□□ 2.67
SHANK3Q9BYB0 LTB4R-202ENST00000396782 1627 ntAPPRIS P1 TSL 1 (best) BASIC31.76■■■□□ 2.67
SHANK3Q9BYB0 MIR638-201ENST00000385237 100 ntBASIC31.75■■■□□ 2.67
SHANK3Q9BYB0 MAGI2-AS3-201ENST00000414797 1072 ntTSL 2 BASIC31.75■■■□□ 2.67
SHANK3Q9BYB0 ZNF263-204ENST00000573578 1636 ntTSL 5 BASIC31.75■■■□□ 2.67
SHANK3Q9BYB0 SHARPIN-202ENST00000398712 1765 ntAPPRIS P1 TSL 1 (best) BASIC31.75■■■□□ 2.67
SHANK3Q9BYB0 AC008406.3-201ENST00000620001 1374 ntBASIC31.75■■■□□ 2.67
SHANK3Q9BYB0 CTDSP2-203ENST00000547701 988 ntTSL 1 (best) BASIC31.75■■■□□ 2.67
SHANK3Q9BYB0 RMI2-201ENST00000312499 1457 ntAPPRIS P1 TSL 1 (best) BASIC31.74■■■□□ 2.67
SHANK3Q9BYB0 AC021242.3-201ENST00000607598 1377 ntBASIC31.74■■■□□ 2.67
SHANK3Q9BYB0 AC092849.1-201ENST00000475250 303 ntTSL 4 BASIC31.74■■■□□ 2.67
SHANK3Q9BYB0 ERO1A-211ENST00000629528 998 ntTSL 5 BASIC31.74■■■□□ 2.67
SHANK3Q9BYB0 RTN4R-201ENST00000043402 2157 ntAPPRIS P2 TSL 1 (best) BASIC31.74■■■□□ 2.67
SHANK3Q9BYB0 R3HCC1-202ENST00000411463 1467 ntAPPRIS P5 TSL 5 BASIC31.73■■■□□ 2.67
SHANK3Q9BYB0 RCC1L-202ENST00000614461 2419 ntTSL 1 (best) BASIC31.73■■■□□ 2.67
SHANK3Q9BYB0 NRARP-201ENST00000356628 1770 ntAPPRIS P1 BASIC31.73■■■□□ 2.67
SHANK3Q9BYB0 LRMDA-215ENST00000611255 1040 ntAPPRIS ALT2 TSL 5 BASIC31.73■■■□□ 2.67
SHANK3Q9BYB0 VEGFC-202ENST00000618562 2064 ntAPPRIS P1 TSL 1 (best) BASIC31.73■■■□□ 2.67
SHANK3Q9BYB0 HMGA2-202ENST00000393577 611 ntTSL 3 BASIC31.72■■■□□ 2.67
SHANK3Q9BYB0 TUBBP5-204ENST00000635438 565 ntTSL 4 BASIC31.72■■■□□ 2.67
SHANK3Q9BYB0 PXDC1-202ENST00000380283 2190 ntAPPRIS P1 TSL 1 (best) BASIC31.72■■■□□ 2.67
SHANK3Q9BYB0 C8orf58-202ENST00000409586 2021 ntAPPRIS ALT2 TSL 2 BASIC31.72■■■□□ 2.67
SHANK3Q9BYB0 RBM33-201ENST00000287912 1404 ntTSL 2 BASIC31.71■■■□□ 2.67
SHANK3Q9BYB0 CERS2-205ENST00000368954 2505 ntAPPRIS P1 TSL 1 (best) BASIC31.71■■■□□ 2.67
SHANK3Q9BYB0 ANKRD13D-211ENST00000511455 2139 ntAPPRIS P1 TSL 1 (best) BASIC31.71■■■□□ 2.67
SHANK3Q9BYB0 LRFN4-202ENST00000393952 1550 ntTSL 5 BASIC31.71■■■□□ 2.67
SHANK3Q9BYB0 RABL6-204ENST00000371671 1580 ntAPPRIS ALT2 TSL 1 (best) BASIC31.7■■■□□ 2.67
SHANK3Q9BYB0 DHRS13-201ENST00000378895 1921 ntAPPRIS P1 TSL 1 (best) BASIC31.7■■■□□ 2.66
SHANK3Q9BYB0 TNFRSF25-201ENST00000348333 1119 ntTSL 1 (best) BASIC31.69■■■□□ 2.66
SHANK3Q9BYB0 TNFRSF25-202ENST00000351748 705 ntTSL 1 (best) BASIC31.69■■■□□ 2.66
SHANK3Q9BYB0 ZNF180-205ENST00000587047 525 ntTSL 4 BASIC31.69■■■□□ 2.66
SHANK3Q9BYB0 VSTM2L-202ENST00000373461 1959 ntAPPRIS P1 TSL 1 (best) BASIC31.69■■■□□ 2.66
SHANK3Q9BYB0 WDSUB1-205ENST00000409990 1920 ntAPPRIS P1 TSL 2 BASIC31.69■■■□□ 2.66
SHANK3Q9BYB0 AC090587.2-201ENST00000430222 527 ntTSL 2 BASIC31.69■■■□□ 2.66
SHANK3Q9BYB0 NKIRAS2-209ENST00000479407 992 ntTSL 3 BASIC31.69■■■□□ 2.66
SHANK3Q9BYB0 AC120024.1-201ENST00000562672 995 ntBASIC31.68■■■□□ 2.66
SHANK3Q9BYB0 MIR663AHG-233ENST00000609248 830 ntTSL 5 BASIC31.68■■■□□ 2.66
SHANK3Q9BYB0 AC009690.3-201ENST00000569547 1902 ntAPPRIS P1 TSL 2 BASIC31.68■■■□□ 2.66
SHANK3Q9BYB0 ST7-205ENST00000393446 2114 ntTSL 5 BASIC31.67■■■□□ 2.66
SHANK3Q9BYB0 GBX1-201ENST00000297537 1092 ntAPPRIS P1 TSL 1 (best) BASIC31.67■■■□□ 2.66
SHANK3Q9BYB0 CFAP77-202ENST00000393215 901 ntAPPRIS ALT2 TSL 5 BASIC31.67■■■□□ 2.66
SHANK3Q9BYB0 RPL31-208ENST00000409733 825 ntAPPRIS P3 TSL 1 (best) BASIC31.67■■■□□ 2.66
SHANK3Q9BYB0 SENP5-202ENST00000419026 973 ntTSL 3 BASIC31.67■■■□□ 2.66
SHANK3Q9BYB0 CDKN2A-207ENST00000497750 565 ntTSL 4 BASIC31.67■■■□□ 2.66
SHANK3Q9BYB0 CDKN2A-212ENST00000578845 678 ntTSL 2 BASIC31.67■■■□□ 2.66
SHANK3Q9BYB0 SEPT3-203ENST00000396426 2586 ntAPPRIS P4 TSL 1 (best) BASIC31.67■■■□□ 2.66
SHANK3Q9BYB0 KRT18P10-201ENST00000388836 1287 ntBASIC31.66■■■□□ 2.66
SHANK3Q9BYB0 MRPS34-202ENST00000397375 1024 ntAPPRIS P1 TSL 1 (best) BASIC31.66■■■□□ 2.66
SHANK3Q9BYB0 C11orf80-218ENST00000540737 1786 ntAPPRIS ALT2 TSL 2 BASIC31.66■■■□□ 2.66
SHANK3Q9BYB0 AC142472.1-201ENST00000612013 1741 ntBASIC31.66■■■□□ 2.66
SHANK3Q9BYB0 ST7-202ENST00000323984 2142 ntTSL 5 BASIC31.66■■■□□ 2.66
SHANK3Q9BYB0 ST7-207ENST00000393449 2127 ntTSL 5 BASIC31.66■■■□□ 2.66
SHANK3Q9BYB0 ANKRD16-202ENST00000380092 1646 ntAPPRIS P1 TSL 1 (best) BASIC31.66■■■□□ 2.66
SHANK3Q9BYB0 PEMT-206ENST00000435340 960 ntTSL 5 BASIC31.66■■■□□ 2.66
SHANK3Q9BYB0 TOMM40-203ENST00000426677 1725 ntAPPRIS P2 TSL 1 (best) BASIC31.65■■■□□ 2.66
SHANK3Q9BYB0 CUEDC1-201ENST00000360238 2193 ntAPPRIS P1 TSL 2 BASIC31.65■■■□□ 2.66
SHANK3Q9BYB0 TRIR-202ENST00000588213 841 ntTSL 3 BASIC31.65■■■□□ 2.66
SHANK3Q9BYB0 RNF130-205ENST00000521389 2263 ntAPPRIS P1 TSL 1 (best) BASIC31.65■■■□□ 2.66
SHANK3Q9BYB0 CD6-206ENST00000452451 1782 ntAPPRIS ALT2 TSL 1 (best) BASIC31.64■■■□□ 2.66
SHANK3Q9BYB0 FEZ1-202ENST00000366139 1053 ntTSL 2 BASIC31.64■■■□□ 2.66
SHANK3Q9BYB0 NDUFA10-204ENST00000407129 699 ntTSL 1 (best) BASIC31.64■■■□□ 2.66
SHANK3Q9BYB0 ARHGAP22-202ENST00000374170 2107 ntTSL 5 BASIC31.64■■■□□ 2.66
SHANK3Q9BYB0 YPEL1-202ENST00000403503 466 ntTSL 3 BASIC31.63■■■□□ 2.65
SHANK3Q9BYB0 TSPAN17-204ENST00000503045 1019 ntTSL 5 BASIC31.63■■■□□ 2.65
SHANK3Q9BYB0 IGFBP7-203ENST00000514062 1251 ntAPPRIS ALT2 TSL 2 BASIC31.63■■■□□ 2.65
SHANK3Q9BYB0 BCKDHB-202ENST00000356489 1514 ntAPPRIS P1 TSL 1 (best) BASIC31.63■■■□□ 2.65
SHANK3Q9BYB0 PI4KAP2-202ENST00000450651 2294 ntTSL 5 BASIC31.63■■■□□ 2.65
SHANK3Q9BYB0 C15orf59-201ENST00000379822 1342 ntAPPRIS P1 TSL 1 (best) BASIC31.63■■■□□ 2.65
SHANK3Q9BYB0 C4orf36-201ENST00000295898 881 ntAPPRIS P1 TSL 1 (best) BASIC31.62■■■□□ 2.65
SHANK3Q9BYB0 ARPC4-208ENST00000498623 942 ntTSL 2 BASIC31.62■■■□□ 2.65
SHANK3Q9BYB0 UBALD2-201ENST00000327490 1593 ntAPPRIS P1 TSL 1 (best) BASIC31.62■■■□□ 2.65
SHANK3Q9BYB0 GUCD1-202ENST00000402766 865 ntTSL 2 BASIC31.61■■■□□ 2.65
SHANK3Q9BYB0 SLC35A2-207ENST00000445167 1739 ntTSL 1 (best) BASIC31.61■■■□□ 2.65
SHANK3Q9BYB0 TMEM134-202ENST00000393877 823 ntTSL 1 (best) BASIC31.61■■■□□ 2.65
SHANK3Q9BYB0 HM13-AS1-201ENST00000412178 489 ntTSL 3 BASIC31.61■■■□□ 2.65
SHANK3Q9BYB0 SLC35B2-204ENST00000537814 1715 ntTSL 2 BASIC31.6■■■□□ 2.65
SHANK3Q9BYB0 NFU1-203ENST00000410022 1467 ntAPPRIS P3 TSL 1 (best) BASIC31.6■■■□□ 2.65
SHANK3Q9BYB0 REXO4-201ENST00000371935 1899 ntTSL 3 BASIC31.6■■■□□ 2.65
SHANK3Q9BYB0 BX255925.1-201ENST00000566954 1854 ntBASIC31.6■■■□□ 2.65
SHANK3Q9BYB0 MDK-202ENST00000395565 951 ntAPPRIS P2 TSL 2 BASIC31.6■■■□□ 2.65
SHANK3Q9BYB0 MIR663AHG-227ENST00000608084 765 ntTSL 5 BASIC31.6■■■□□ 2.65
SHANK3Q9BYB0 SLC16A10-206ENST00000612036 1231 ntTSL 5 BASIC31.6■■■□□ 2.65
SHANK3Q9BYB0 AL117332.1-201ENST00000622628 974 ntBASIC31.6■■■□□ 2.65
Retrieved 100 of 98,524 protein–RNA pairs in 31.4 ms