Protein–RNA interactions for Protein: Q9BT23

LIMD2, LIM domain-containing protein 2, humanhuman

Predictions only

Length 127 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
LIMD2Q9BT23 POU2F2-208ENST00000529952 1716 ntAPPRIS ALT2 TSL 1 (best) BASIC14.15□□□□□ -0.14
LIMD2Q9BT23 NXPH3-201ENST00000328741 2179 ntAPPRIS P1 TSL 1 (best) BASIC14.15□□□□□ -0.15
LIMD2Q9BT23 STOML1-202ENST00000316911 1891 ntTSL 1 (best) BASIC14.14□□□□□ -0.15
LIMD2Q9BT23 CTDP1-208ENST00000613122 5866 ntAPPRIS P3 TSL 1 (best) BASIC14.14□□□□□ -0.15
LIMD2Q9BT23 GRIN1-208ENST00000371561 5149 ntTSL 1 (best) BASIC14.14□□□□□ -0.15
LIMD2Q9BT23 TMEM185A-208ENST00000611119 2662 ntTSL 2 BASIC14.14□□□□□ -0.15
LIMD2Q9BT23 BIN1-207ENST00000357970 2497 ntTSL 1 (best) BASIC14.14□□□□□ -0.15
LIMD2Q9BT23 C12orf75-201ENST00000443585 1366 ntAPPRIS P1 TSL 2 BASIC14.14□□□□□ -0.15
LIMD2Q9BT23 EPB41L4A-AS2-201ENST00000623705 1396 ntBASIC14.14□□□□□ -0.15
LIMD2Q9BT23 RINL-208ENST00000598904 1846 ntAPPRIS P3 TSL 5 BASIC14.14□□□□□ -0.15
LIMD2Q9BT23 FAM168B-201ENST00000389915 944 ntAPPRIS P1 TSL 3 BASIC14.14□□□□□ -0.15
LIMD2Q9BT23 PDK1-202ENST00000392571 1515 ntAPPRIS ALT2 TSL 1 (best) BASIC14.14□□□□□ -0.15
LIMD2Q9BT23 FLVCR1-201ENST00000366971 5939 ntAPPRIS P1 TSL 1 (best) BASIC14.14□□□□□ -0.15
LIMD2Q9BT23 ARL6IP4-211ENST00000454885 1318 ntAPPRIS ALT2 TSL 1 (best) BASIC14.14□□□□□ -0.15
LIMD2Q9BT23 AL359258.2-201ENST00000564063 1566 ntBASIC14.13□□□□□ -0.15
LIMD2Q9BT23 CDC42BPB-201ENST00000361246 6758 ntAPPRIS P1 TSL 1 (best) BASIC14.13□□□□□ -0.15
LIMD2Q9BT23 ARMC6-201ENST00000269932 2412 ntAPPRIS P1 TSL 5 BASIC14.13□□□□□ -0.15
LIMD2Q9BT23 ROCK2-202ENST00000315872 8292 ntAPPRIS P1 TSL 1 (best) BASIC14.13□□□□□ -0.15
LIMD2Q9BT23 NXNL1-201ENST00000301944 946 ntAPPRIS P1 TSL 1 (best) BASIC14.13□□□□□ -0.15
LIMD2Q9BT23 HLA-V-202ENST00000446817 847 ntBASIC14.13□□□□□ -0.15
LIMD2Q9BT23 AC016575.1-201ENST00000607026 382 ntBASIC14.13□□□□□ -0.15
LIMD2Q9BT23 POU2F2-215ENST00000560398 1788 ntTSL 5 BASIC14.13□□□□□ -0.15
LIMD2Q9BT23 ANKRD9-205ENST00000560748 1413 ntAPPRIS P1 TSL 2 BASIC14.13□□□□□ -0.15
LIMD2Q9BT23 FGF20-201ENST00000180166 1688 ntAPPRIS P1 TSL 1 (best) BASIC14.13□□□□□ -0.15
LIMD2Q9BT23 PRKAR1B-203ENST00000403562 1917 ntAPPRIS P1 TSL 1 (best) BASIC14.13□□□□□ -0.15
LIMD2Q9BT23 TSEN34-204ENST00000429671 1912 ntTSL 2 BASIC14.13□□□□□ -0.15
LIMD2Q9BT23 NELFB-201ENST00000343053 2698 ntAPPRIS ALT2 TSL 1 (best) BASIC14.13□□□□□ -0.15
LIMD2Q9BT23 QKI-201ENST00000275262 6964 ntTSL 1 (best) BASIC14.13□□□□□ -0.15
LIMD2Q9BT23 GATA2-AS1-202ENST00000468377 1578 ntTSL 2 BASIC14.13□□□□□ -0.15
LIMD2Q9BT23 KIF13A-207ENST00000502704 1330 ntTSL 1 (best) BASIC14.13□□□□□ -0.15
LIMD2Q9BT23 C19orf47-202ENST00000392035 2126 ntAPPRIS ALT2 TSL 1 (best) BASIC14.12□□□□□ -0.15
LIMD2Q9BT23 AC093323.1-202ENST00000635031 2045 ntBASIC14.12□□□□□ -0.15
LIMD2Q9BT23 TAF10-201ENST00000299424 1215 ntAPPRIS P1 TSL 1 (best) BASIC14.12□□□□□ -0.15
LIMD2Q9BT23 PLEKHF2-202ENST00000519516 1144 ntAPPRIS P1 TSL 3 BASIC14.12□□□□□ -0.15
LIMD2Q9BT23 DCAF15-201ENST00000254337 2278 ntAPPRIS P1 TSL 1 (best) BASIC14.12□□□□□ -0.15
LIMD2Q9BT23 CTF1-202ENST00000395019 1617 ntAPPRIS ALT1 TSL 1 (best) BASIC14.12□□□□□ -0.15
LIMD2Q9BT23 SKI-201ENST00000378536 5613 ntAPPRIS P1 TSL 1 (best) BASIC14.11□□□□□ -0.15
LIMD2Q9BT23 RFLNA-205ENST00000546355 2354 ntAPPRIS ALT1 TSL 1 (best) BASIC14.11□□□□□ -0.15
LIMD2Q9BT23 LSM7-201ENST00000252622 529 ntAPPRIS P1 TSL 1 (best) BASIC14.11□□□□□ -0.15
LIMD2Q9BT23 BAX-202ENST00000345358 793 ntAPPRIS P1 TSL 1 (best) BASIC14.11□□□□□ -0.15
LIMD2Q9BT23 WNT5A-AS1-201ENST00000469484 500 ntTSL 3 BASIC14.11□□□□□ -0.15
LIMD2Q9BT23 FEZ2-204ENST00000405912 1931 ntTSL 1 (best) BASIC14.11□□□□□ -0.15
LIMD2Q9BT23 FSD1-201ENST00000221856 1831 ntAPPRIS P1 TSL 1 (best) BASIC14.11□□□□□ -0.15
LIMD2Q9BT23 U2AF1-204ENST00000459639 1675 ntTSL 1 (best) BASIC14.1□□□□□ -0.15
LIMD2Q9BT23 U2AF1L5-204ENST00000623375 1675 ntTSL 1 (best) BASIC14.1□□□□□ -0.15
LIMD2Q9BT23 SOX10-202ENST00000396884 2879 ntAPPRIS P1 TSL 1 (best) BASIC14.1□□□□□ -0.15
LIMD2Q9BT23 KRT18-201ENST00000388835 1562 ntAPPRIS P1 TSL 1 (best) BASIC14.1□□□□□ -0.15
LIMD2Q9BT23 KLC1-225ENST00000557575 2188 ntTSL 5 BASIC14.1□□□□□ -0.15
LIMD2Q9BT23 COMT-204ENST00000403710 1548 ntAPPRIS P3 TSL 5 BASIC14.1□□□□□ -0.15
LIMD2Q9BT23 NRG2-203ENST00000340391 1944 ntTSL 5 BASIC14.09□□□□□ -0.15
LIMD2Q9BT23 VRK2-202ENST00000412104 1916 ntTSL 1 (best) BASIC14.09□□□□□ -0.15
LIMD2Q9BT23 HSF1-204ENST00000528838 2142 ntAPPRIS P1 TSL 1 (best) BASIC14.09□□□□□ -0.15
LIMD2Q9BT23 BICRA-204ENST00000614245 5697 ntAPPRIS ALT2 TSL 5 BASIC14.09□□□□□ -0.15
LIMD2Q9BT23 SLC22A23-205ENST00000436008 6641 ntAPPRIS ALT2 TSL 5 BASIC14.09□□□□□ -0.15
LIMD2Q9BT23 MAZ-202ENST00000322945 2532 ntAPPRIS ALT2 TSL 1 (best) BASIC14.09□□□□□ -0.15
LIMD2Q9BT23 CAPN10-204ENST00000354082 1999 ntTSL 1 (best) BASIC14.09□□□□□ -0.15
LIMD2Q9BT23 BTBD6-204ENST00000463376 2195 ntAPPRIS ALT2 TSL 2 BASIC14.09□□□□□ -0.15
LIMD2Q9BT23 LAMC3-202ENST00000361069 6133 ntAPPRIS P1 TSL 2 BASIC14.09□□□□□ -0.15
LIMD2Q9BT23 METRNL-202ENST00000570778 967 ntTSL 5 BASIC14.09□□□□□ -0.15
LIMD2Q9BT23 MMP24-201ENST00000246186 4414 ntAPPRIS P1 TSL 1 (best) BASIC14.09□□□□□ -0.15
LIMD2Q9BT23 TRAPPC5-204ENST00000596148 5498 ntAPPRIS P1 TSL 1 (best) BASIC14.09□□□□□ -0.15
LIMD2Q9BT23 KREMEN2-204ENST00000572045 2339 ntAPPRIS ALT2 TSL 1 (best) BASIC14.09□□□□□ -0.15
LIMD2Q9BT23 ZDHHC17-201ENST00000426126 5259 ntAPPRIS P1 TSL 1 (best) BASIC14.09□□□□□ -0.15
LIMD2Q9BT23 R3HCC1-201ENST00000265806 1773 ntAPPRIS ALT2 TSL 1 (best) BASIC14.09□□□□□ -0.15
LIMD2Q9BT23 CACNA1B-204ENST00000371357 9642 ntAPPRIS ALT2 TSL 5 BASIC14.09□□□□□ -0.15
LIMD2Q9BT23 KMT5B-201ENST00000304363 5837 ntAPPRIS P1 TSL 5 BASIC14.08□□□□□ -0.16
LIMD2Q9BT23 KLF9-201ENST00000377126 5175 ntAPPRIS P1 TSL 1 (best) BASIC14.08□□□□□ -0.16
LIMD2Q9BT23 CAMK1D-203ENST00000615792 1725 ntTSL 5 BASIC14.08□□□□□ -0.16
LIMD2Q9BT23 HSD17B12-202ENST00000395700 994 ntTSL 1 (best) BASIC14.08□□□□□ -0.16
LIMD2Q9BT23 VSTM2L-202ENST00000373461 1959 ntAPPRIS P1 TSL 1 (best) BASIC14.08□□□□□ -0.16
LIMD2Q9BT23 AC145676.1-201ENST00000514988 2004 ntBASIC14.08□□□□□ -0.16
LIMD2Q9BT23 YBX2-201ENST00000007699 1590 ntAPPRIS P1 TSL 1 (best) BASIC14.08□□□□□ -0.16
LIMD2Q9BT23 HTRA1-201ENST00000368984 2120 ntAPPRIS P1 TSL 1 (best) BASIC14.08□□□□□ -0.16
LIMD2Q9BT23 ST8SIA2-201ENST00000268164 5708 ntAPPRIS P1 TSL 1 (best) BASIC14.08□□□□□ -0.16
LIMD2Q9BT23 FAM43A-201ENST00000329759 2494 ntAPPRIS P1 BASIC14.07□□□□□ -0.16
LIMD2Q9BT23 PABPN1-202ENST00000397276 2768 ntAPPRIS ALT1 TSL 1 (best) BASIC14.07□□□□□ -0.16
LIMD2Q9BT23 FUT4-201ENST00000358752 6059 ntAPPRIS P1 BASIC14.07□□□□□ -0.16
LIMD2Q9BT23 SOX11-201ENST00000322002 8719 ntAPPRIS P1 BASIC14.07□□□□□ -0.16
LIMD2Q9BT23 VEGFA-202ENST00000324450 954 ntTSL 1 (best) BASIC14.07□□□□□ -0.16
LIMD2Q9BT23 VEGFA-203ENST00000372055 1286 ntTSL 1 (best) BASIC14.07□□□□□ -0.16
LIMD2Q9BT23 VEGFA-208ENST00000417285 1081 ntAPPRIS ALT2 TSL 1 (best) BASIC14.07□□□□□ -0.16
LIMD2Q9BT23 BOK-AS1-201ENST00000434306 643 ntTSL 1 (best) BASIC14.07□□□□□ -0.16
LIMD2Q9BT23 VEGFA-213ENST00000482630 1146 ntTSL 1 (best) BASIC14.07□□□□□ -0.16
LIMD2Q9BT23 RPS20-211ENST00000524349 752 ntTSL 1 (best) BASIC14.07□□□□□ -0.16
LIMD2Q9BT23 VEGFA-227ENST00000615393 984 ntTSL 1 (best) BASIC14.07□□□□□ -0.16
LIMD2Q9BT23 VEGFA-228ENST00000617771 1116 ntTSL 1 (best) BASIC14.07□□□□□ -0.16
LIMD2Q9BT23 VEGFA-229ENST00000621747 1116 ntAPPRIS ALT2 TSL 1 (best) BASIC14.07□□□□□ -0.16
LIMD2Q9BT23 VEGFA-230ENST00000640482 1065 ntAPPRIS ALT2 TSL 1 (best) BASIC14.07□□□□□ -0.16
LIMD2Q9BT23 VEGFA-232ENST00000640653 1170 ntAPPRIS ALT2 TSL 1 (best) BASIC14.07□□□□□ -0.16
LIMD2Q9BT23 DLX2-202ENST00000466293 1852 ntTSL 2 BASIC14.07□□□□□ -0.16
LIMD2Q9BT23 ALG2-203ENST00000476832 1880 ntAPPRIS P1 TSL 1 (best) BASIC14.07□□□□□ -0.16
LIMD2Q9BT23 TP53I3-201ENST00000238721 1998 ntAPPRIS P1 TSL 1 (best) BASIC14.07□□□□□ -0.16
LIMD2Q9BT23 NRM-201ENST00000259953 1755 ntAPPRIS P2 TSL 2 BASIC14.06□□□□□ -0.16
LIMD2Q9BT23 PDE10A-205ENST00000616273 2118 ntTSL 2 BASIC14.06□□□□□ -0.16
LIMD2Q9BT23 TSPAN10-203ENST00000574882 1837 ntAPPRIS P2 TSL 1 (best) BASIC14.06□□□□□ -0.16
LIMD2Q9BT23 MXD3-201ENST00000423571 1534 ntTSL 2 BASIC14.06□□□□□ -0.16
LIMD2Q9BT23 CEBPB-AS1-201ENST00000613921 2648 ntTSL 3 BASIC14.06□□□□□ -0.16
LIMD2Q9BT23 CASP9-202ENST00000348549 1621 ntTSL 1 (best) BASIC14.06□□□□□ -0.16
LIMD2Q9BT23 MAP4K3-211ENST00000484274 407 ntTSL 2 BASIC14.06□□□□□ -0.16
LIMD2Q9BT23 ABHD17C-201ENST00000258884 2368 ntAPPRIS P1 TSL 1 (best) BASIC14.06□□□□□ -0.16
Retrieved 100 of 98,524 protein–RNA pairs in 14 ms