Protein–RNA interactions for Protein: Q53F19

NCBP3, Nuclear cap-binding protein subunit 3, humanhuman

Known RBP Predictions only

Length 620 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
NCBP3Q53F19 CTBP2-211ENST00000494626 2014 ntAPPRIS P1 TSL 1 (best) BASIC31.54■■■□□ 2.64
NCBP3Q53F19 SNHG7-204ENST00000447221 2157 ntTSL 2 BASIC31.54■■■□□ 2.64
NCBP3Q53F19 CAPN10-204ENST00000354082 1999 ntTSL 1 (best) BASIC31.54■■■□□ 2.64
NCBP3Q53F19 CHKA-202ENST00000356135 1755 ntAPPRIS ALT2 TSL 1 (best) BASIC31.54■■■□□ 2.64
NCBP3Q53F19 TST-202ENST00000403892 1797 ntAPPRIS P1 TSL 1 (best) BASIC31.54■■■□□ 2.64
NCBP3Q53F19 RIPPLY2-202ENST00000369689 664 ntAPPRIS P2 TSL 1 (best) BASIC31.54■■■□□ 2.64
NCBP3Q53F19 TSPY4-202ENST00000426950 1179 ntAPPRIS P5 TSL 5 BASIC31.54■■■□□ 2.64
NCBP3Q53F19 U85056.1-201ENST00000616429 682 ntBASIC31.54■■■□□ 2.64
NCBP3Q53F19 RRNAD1-201ENST00000368216 2254 ntAPPRIS P3 TSL 1 (best) BASIC31.54■■■□□ 2.64
NCBP3Q53F19 CPSF4-207ENST00000451876 1644 ntTSL 5 BASIC31.53■■■□□ 2.64
NCBP3Q53F19 MAD2L2-201ENST00000235310 1860 ntAPPRIS P1 TSL 2 BASIC31.53■■■□□ 2.64
NCBP3Q53F19 WTAP-207ENST00000631126 1430 ntTSL 3 BASIC31.53■■■□□ 2.64
NCBP3Q53F19 PSMG3-202ENST00000288607 1391 ntAPPRIS P1 TSL 1 (best) BASIC31.53■■■□□ 2.64
NCBP3Q53F19 PORCN-203ENST00000359882 1877 ntAPPRIS ALT1 TSL 5 BASIC31.52■■■□□ 2.64
NCBP3Q53F19 TMUB1-202ENST00000392818 1563 ntAPPRIS P1 TSL 1 (best) BASIC31.52■■■□□ 2.64
NCBP3Q53F19 C20orf24-201ENST00000342422 896 ntTSL 2 BASIC31.52■■■□□ 2.64
NCBP3Q53F19 C20orf24-202ENST00000344795 1114 ntAPPRIS P1 TSL 1 (best) BASIC31.52■■■□□ 2.64
NCBP3Q53F19 LIME1-206ENST00000487026 805 ntAPPRIS ALT2 TSL 5 BASIC31.52■■■□□ 2.64
NCBP3Q53F19 AL592293.1-201ENST00000502889 1188 ntBASIC31.52■■■□□ 2.64
NCBP3Q53F19 CACNG7-203ENST00000391767 2688 ntAPPRIS P1 TSL 5 BASIC31.52■■■□□ 2.64
NCBP3Q53F19 TMEM120A-214ENST00000493111 1456 ntAPPRIS P1 TSL 1 (best) BASIC31.52■■■□□ 2.64
NCBP3Q53F19 CAPZB-203ENST00000375142 1686 ntAPPRIS ALT1 TSL 5 BASIC31.51■■■□□ 2.64
NCBP3Q53F19 CHST13-201ENST00000319340 1789 ntAPPRIS P1 TSL 1 (best) BASIC31.51■■■□□ 2.63
NCBP3Q53F19 AC138647.1-201ENST00000427937 648 ntAPPRIS P1 TSL 5 BASIC31.5■■■□□ 2.63
NCBP3Q53F19 UBE2I-213ENST00000566587 1098 ntAPPRIS P1 TSL 2 BASIC31.5■■■□□ 2.63
NCBP3Q53F19 FKBP8-213ENST00000608443 1849 ntAPPRIS P3 TSL 1 (best) BASIC31.49■■■□□ 2.63
NCBP3Q53F19 MPC1-201ENST00000341756 976 ntTSL 1 (best) BASIC31.49■■■□□ 2.63
NCBP3Q53F19 TRIM52-AS1-202ENST00000507434 672 ntTSL 1 (best) BASIC31.49■■■□□ 2.63
NCBP3Q53F19 MPC1-206ENST00000621630 977 ntAPPRIS ALT1 TSL 5 BASIC31.49■■■□□ 2.63
NCBP3Q53F19 MPC1-207ENST00000621685 1192 ntTSL 5 BASIC31.49■■■□□ 2.63
NCBP3Q53F19 SNAI3-AS1-204ENST00000567997 2048 ntBASIC31.49■■■□□ 2.63
NCBP3Q53F19 EPCAM-201ENST00000263735 1724 ntAPPRIS P1 TSL 1 (best) BASIC31.49■■■□□ 2.63
NCBP3Q53F19 CEND1-201ENST00000330106 1649 ntAPPRIS P1 TSL 1 (best) BASIC31.49■■■□□ 2.63
NCBP3Q53F19 PURG-201ENST00000339382 2693 ntTSL 1 (best) BASIC31.49■■■□□ 2.63
NCBP3Q53F19 GSK3A-201ENST00000222330 2188 ntAPPRIS P2 TSL 1 (best) BASIC31.49■■■□□ 2.63
NCBP3Q53F19 CIC-201ENST00000160740 6111 ntAPPRIS ALT1 TSL 5 BASIC31.48■■■□□ 2.63
NCBP3Q53F19 SP5-201ENST00000375281 2033 ntAPPRIS P1 TSL 1 (best) BASIC31.48■■■□□ 2.63
NCBP3Q53F19 C20orf24-203ENST00000373852 1059 ntTSL 1 (best) BASIC31.48■■■□□ 2.63
NCBP3Q53F19 LTB4R-202ENST00000396782 1627 ntAPPRIS P1 TSL 1 (best) BASIC31.48■■■□□ 2.63
NCBP3Q53F19 KRT72-202ENST00000354310 1764 ntTSL 2 BASIC31.48■■■□□ 2.63
NCBP3Q53F19 FAM98C-202ENST00000343358 1006 ntTSL 1 (best) BASIC31.47■■■□□ 2.63
NCBP3Q53F19 SLC52A2-208ENST00000527078 1790 ntAPPRIS P1 TSL 5 BASIC31.47■■■□□ 2.63
NCBP3Q53F19 RRP9-201ENST00000232888 1578 ntAPPRIS P1 TSL 1 (best) BASIC31.47■■■□□ 2.63
NCBP3Q53F19 SYT7-202ENST00000535826 1621 ntTSL 5 BASIC31.46■■■□□ 2.63
NCBP3Q53F19 NTF6A-201ENST00000591175 560 ntBASIC31.46■■■□□ 2.63
NCBP3Q53F19 DGAT1-201ENST00000332324 1473 ntTSL 5 BASIC31.46■■■□□ 2.63
NCBP3Q53F19 TTBK2-207ENST00000567840 1961 ntTSL 1 (best) BASIC31.45■■■□□ 2.63
NCBP3Q53F19 MAGI2-211ENST00000535697 6146 ntTSL 5 BASIC31.45■■■□□ 2.63
NCBP3Q53F19 PLGRKT-201ENST00000223864 932 ntAPPRIS P1 TSL 1 (best) BASIC31.45■■■□□ 2.63
NCBP3Q53F19 PTCH1-210ENST00000468211 1254 ntTSL 1 (best) BASIC31.45■■■□□ 2.63
NCBP3Q53F19 SLC39A3-201ENST00000269740 1502 ntAPPRIS P1 TSL 1 (best) BASIC31.44■■■□□ 2.62
NCBP3Q53F19 ANKRD53-201ENST00000272421 2185 ntAPPRIS P3 TSL 1 (best) BASIC31.44■■■□□ 2.62
NCBP3Q53F19 TMEM104-205ENST00000582773 1740 ntTSL 2 BASIC31.44■■■□□ 2.62
NCBP3Q53F19 PSMG4-207ENST00000451246 824 ntTSL 3 BASIC31.44■■■□□ 2.62
NCBP3Q53F19 AC018755.3-201ENST00000598755 664 ntTSL 2 BASIC31.44■■■□□ 2.62
NCBP3Q53F19 GGH-201ENST00000260118 1607 ntAPPRIS P1 TSL 1 (best) BASIC31.44■■■□□ 2.62
NCBP3Q53F19 POU3F3-201ENST00000361360 3064 ntAPPRIS P1 BASIC31.44■■■□□ 2.62
NCBP3Q53F19 SPCS2P3-201ENST00000500401 656 ntBASIC31.43■■■□□ 2.62
NCBP3Q53F19 AC097639.1-201ENST00000565519 1891 ntBASIC31.43■■■□□ 2.62
NCBP3Q53F19 TSPAN13-201ENST00000262067 2093 ntAPPRIS P1 TSL 1 (best) BASIC31.43■■■□□ 2.62
NCBP3Q53F19 GPR150-201ENST00000380007 2065 ntAPPRIS P1 BASIC31.43■■■□□ 2.62
NCBP3Q53F19 OSCAR-202ENST00000351806 1375 ntAPPRIS ALT2 TSL 1 (best) BASIC31.43■■■□□ 2.62
NCBP3Q53F19 RABL6-202ENST00000357466 1820 ntAPPRIS ALT2 TSL 1 (best) BASIC31.42■■■□□ 2.62
NCBP3Q53F19 KRT18P60-201ENST00000312876 1297 ntBASIC31.42■■■□□ 2.62
NCBP3Q53F19 TLE6-201ENST00000246112 2100 ntAPPRIS ALT2 TSL 1 (best) BASIC31.42■■■□□ 2.62
NCBP3Q53F19 THAP4-204ENST00000407315 2367 ntAPPRIS P1 TSL 1 (best) BASIC31.42■■■□□ 2.62
NCBP3Q53F19 TAZ-205ENST00000475699 1862 ntTSL 1 (best) BASIC31.42■■■□□ 2.62
NCBP3Q53F19 ANKS3-204ENST00000585773 1946 ntTSL 2 BASIC31.41■■■□□ 2.62
NCBP3Q53F19 RINL-202ENST00000591812 1910 ntAPPRIS ALT2 TSL 2 BASIC31.41■■■□□ 2.62
NCBP3Q53F19 MEIS3-204ENST00000558555 1715 ntAPPRIS ALT2 TSL 5 BASIC31.41■■■□□ 2.62
NCBP3Q53F19 CASTOR2-201ENST00000616305 1257 ntAPPRIS P1 TSL 1 (best) BASIC31.41■■■□□ 2.62
NCBP3Q53F19 IL15RA-214ENST00000525219 1850 ntAPPRIS ALT2 TSL 1 (best) BASIC31.41■■■□□ 2.62
NCBP3Q53F19 KIAA1456-206ENST00000528753 2392 ntTSL 2 BASIC31.41■■■□□ 2.62
NCBP3Q53F19 RHOF-203ENST00000537171 1485 ntTSL 1 (best) BASIC31.4■■■□□ 2.62
NCBP3Q53F19 CCDC106-202ENST00000586790 2162 ntAPPRIS P1 TSL 1 (best) BASIC31.4■■■□□ 2.62
NCBP3Q53F19 IDNK-203ENST00000405990 629 ntTSL 2 BASIC31.4■■■□□ 2.62
NCBP3Q53F19 FAM222B-205ENST00000577682 549 ntTSL 4 BASIC31.4■■■□□ 2.62
NCBP3Q53F19 PNCK-204ENST00000370150 1612 ntAPPRIS P1 TSL 5 BASIC31.39■■■□□ 2.62
NCBP3Q53F19 ARRB2-210ENST00000572457 1660 ntTSL 5 BASIC31.39■■■□□ 2.62
NCBP3Q53F19 RBFA-201ENST00000262197 1219 ntTSL 1 (best) BASIC31.39■■■□□ 2.62
NCBP3Q53F19 RFWD2-201ENST00000308769 2124 ntTSL 1 (best) BASIC31.39■■■□□ 2.61
NCBP3Q53F19 FBXL6-202ENST00000455319 1727 ntAPPRIS ALT2 TSL 1 (best) BASIC31.38■■■□□ 2.61
NCBP3Q53F19 MROH6-210ENST00000533679 1921 ntAPPRIS ALT2 TSL 1 (best) BASIC31.38■■■□□ 2.61
NCBP3Q53F19 KREMEN2-205ENST00000575769 1922 ntAPPRIS ALT2 TSL 1 (best) BASIC31.38■■■□□ 2.61
NCBP3Q53F19 AC129492.7-201ENST00000622992 756 ntBASIC31.38■■■□□ 2.61
NCBP3Q53F19 KAT8-206ENST00000543774 1846 ntAPPRIS P1 TSL 5 BASIC31.38■■■□□ 2.61
NCBP3Q53F19 PPP1R14A-201ENST00000301242 777 ntAPPRIS P1 TSL 1 (best) BASIC31.37■■■□□ 2.61
NCBP3Q53F19 MLST8-219ENST00000565250 1588 ntAPPRIS P3 TSL 3 BASIC31.37■■■□□ 2.61
NCBP3Q53F19 LYPLA1-215ENST00000618914 2482 ntTSL 5 BASIC31.37■■■□□ 2.61
NCBP3Q53F19 BCL7C-202ENST00000380317 2409 ntTSL 1 (best) BASIC31.36■■■□□ 2.61
NCBP3Q53F19 PTPA-202ENST00000347048 1989 ntTSL 1 (best) BASIC31.36■■■□□ 2.61
NCBP3Q53F19 GNB2-203ENST00000393926 1641 ntAPPRIS P1 TSL 5 BASIC31.36■■■□□ 2.61
NCBP3Q53F19 PPP4C-201ENST00000279387 1407 ntAPPRIS P1 TSL 1 (best) BASIC31.36■■■□□ 2.61
NCBP3Q53F19 PLEK2-201ENST00000216446 1549 ntAPPRIS P1 TSL 1 (best) BASIC31.35■■■□□ 2.61
NCBP3Q53F19 RBM42-205ENST00000589871 1487 ntTSL 5 BASIC31.35■■■□□ 2.61
NCBP3Q53F19 LMO2-201ENST00000257818 2294 ntTSL 1 (best) BASIC31.35■■■□□ 2.61
NCBP3Q53F19 DNAH9-209ENST00000579828 1986 ntTSL 2 BASIC31.35■■■□□ 2.61
NCBP3Q53F19 PAOX-203ENST00000357296 1633 ntTSL 1 (best) BASIC31.35■■■□□ 2.61
NCBP3Q53F19 PTPMT1-205ENST00000534775 1611 ntTSL 1 (best) BASIC31.35■■■□□ 2.61
NCBP3Q53F19 ANKRD9-204ENST00000559651 1444 ntAPPRIS P1 TSL 1 (best) BASIC31.34■■■□□ 2.61
Retrieved 100 of 98,524 protein–RNA pairs in 9.9 ms