Protein–RNA interactions for Protein: Q02388

COL7A1, Collagen alpha-1(VII) chain, humanhuman

Predictions only

Length 2,944 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
COL7A1Q02388 OXLD1-203ENST00000571503 803 ntTSL 2 BASIC17.6■□□□□ 0.41
COL7A1Q02388 ANKRD9-204ENST00000559651 1444 ntAPPRIS P1 TSL 1 (best) BASIC17.6■□□□□ 0.41
COL7A1Q02388 CDPF1-201ENST00000314567 1875 ntAPPRIS P2 TSL 1 (best) BASIC17.6■□□□□ 0.41
COL7A1Q02388 AC090587.2-201ENST00000430222 527 ntTSL 2 BASIC17.6■□□□□ 0.41
COL7A1Q02388 AC004540.2-202ENST00000451264 508 ntTSL 2 BASIC17.6■□□□□ 0.41
COL7A1Q02388 AL117336.3-202ENST00000605499 489 ntTSL 3 BASIC17.6■□□□□ 0.41
COL7A1Q02388 MIR663AHG-227ENST00000608084 765 ntTSL 5 BASIC17.6■□□□□ 0.41
COL7A1Q02388 RFFL-206ENST00000447669 2030 ntAPPRIS P1 TSL 5 BASIC17.6■□□□□ 0.41
COL7A1Q02388 FOXF2-201ENST00000259806 2187 ntAPPRIS P1 TSL 1 (best) BASIC17.59■□□□□ 0.41
COL7A1Q02388 GJD3-201ENST00000578689 885 ntAPPRIS P1 BASIC17.59■□□□□ 0.41
COL7A1Q02388 HIST2H3C-201ENST00000369158 1656 ntAPPRIS P1 BASIC17.59■□□□□ 0.41
COL7A1Q02388 HIST2H3A-201ENST00000403683 1656 ntAPPRIS P1 BASIC17.59■□□□□ 0.41
COL7A1Q02388 PFN2-210ENST00000481767 1620 ntTSL 2 BASIC17.59■□□□□ 0.41
COL7A1Q02388 DCTPP1-201ENST00000319285 1222 ntAPPRIS P1 TSL 1 (best) BASIC17.58■□□□□ 0.41
COL7A1Q02388 EDA-209ENST00000525810 843 ntTSL 1 (best) BASIC17.58■□□□□ 0.41
COL7A1Q02388 TOLLIP-208ENST00000527938 549 ntTSL 4 BASIC17.58■□□□□ 0.41
COL7A1Q02388 AC009097.2-201ENST00000562763 465 ntTSL 2 BASIC17.58■□□□□ 0.41
COL7A1Q02388 MIR4281-201ENST00000580852 62 ntBASIC17.58■□□□□ 0.41
COL7A1Q02388 NELFB-202ENST00000634710 1887 ntAPPRIS P2 TSL 1 (best) BASIC17.58■□□□□ 0.41
COL7A1Q02388 NAA30-203ENST00000555166 1294 ntAPPRIS ALT2 TSL 2 BASIC17.58■□□□□ 0.4
COL7A1Q02388 ERO1A-211ENST00000629528 998 ntTSL 5 BASIC17.58■□□□□ 0.4
COL7A1Q02388 IGFBP7-203ENST00000514062 1251 ntAPPRIS ALT2 TSL 2 BASIC17.58■□□□□ 0.4
COL7A1Q02388 AC106739.1-201ENST00000617035 715 ntBASIC17.58■□□□□ 0.4
COL7A1Q02388 LSM4-201ENST00000252816 986 ntTSL 2 BASIC17.57■□□□□ 0.4
COL7A1Q02388 PPM1J-201ENST00000309276 1863 ntAPPRIS P1 TSL 1 (best) BASIC17.57■□□□□ 0.4
COL7A1Q02388 KDELR3-202ENST00000409006 931 ntTSL 1 (best) BASIC17.57■□□□□ 0.4
COL7A1Q02388 KRTAP5-4-202ENST00000616115 660 ntAPPRIS ALT2 TSL 5 BASIC17.57■□□□□ 0.4
COL7A1Q02388 FKBP8-213ENST00000608443 1849 ntAPPRIS P3 TSL 1 (best) BASIC17.57■□□□□ 0.4
COL7A1Q02388 TPM2-203ENST00000378292 2147 ntAPPRIS ALT1 TSL 1 (best) BASIC17.56■□□□□ 0.4
COL7A1Q02388 EPHB2-207ENST00000544305 1709 ntTSL 1 (best) BASIC17.56■□□□□ 0.4
COL7A1Q02388 MIR6724-1-201ENST00000616420 92 ntBASIC17.56■□□□□ 0.4
COL7A1Q02388 MIR6724-2-201ENST00000616483 92 ntBASIC17.56■□□□□ 0.4
COL7A1Q02388 MIR6724-4-201ENST00000617390 92 ntBASIC17.56■□□□□ 0.4
COL7A1Q02388 FKBP1A-211ENST00000618612 1518 ntTSL 1 (best) BASIC17.56■□□□□ 0.4
COL7A1Q02388 MIR6724-3-201ENST00000622482 92 ntBASIC17.56■□□□□ 0.4
COL7A1Q02388 AC005551.1-201ENST00000641816 493 ntAPPRIS P1 BASIC17.56■□□□□ 0.4
COL7A1Q02388 NEDD4L-237ENST00000617539 728 ntTSL 2 BASIC17.56■□□□□ 0.4
COL7A1Q02388 UBE2J2-202ENST00000349431 1733 ntAPPRIS P1 TSL 1 (best) BASIC17.55■□□□□ 0.4
COL7A1Q02388 MBOAT7-202ENST00000338624 2076 ntTSL 2 BASIC17.55■□□□□ 0.4
COL7A1Q02388 HTR6-201ENST00000289753 1984 ntAPPRIS P1 TSL 1 (best) BASIC17.55■□□□□ 0.4
COL7A1Q02388 SENP5-202ENST00000419026 973 ntTSL 3 BASIC17.55■□□□□ 0.4
COL7A1Q02388 LGR4-203ENST00000480977 492 ntTSL 2 BASIC17.55■□□□□ 0.4
COL7A1Q02388 CPTP-201ENST00000343938 2190 ntAPPRIS P1 TSL 2 BASIC17.55■□□□□ 0.4
COL7A1Q02388 MDK-202ENST00000395565 951 ntAPPRIS P2 TSL 2 BASIC17.54■□□□□ 0.4
COL7A1Q02388 HNRNPAB-208ENST00000515193 1595 ntAPPRIS ALT2 TSL 5 BASIC17.54■□□□□ 0.4
COL7A1Q02388 CARD19-201ENST00000375464 855 ntAPPRIS P1 TSL 1 (best) BASIC17.54■□□□□ 0.4
COL7A1Q02388 SAE1-209ENST00000598840 1831 ntTSL 5 BASIC17.54■□□□□ 0.4
COL7A1Q02388 UBP1-201ENST00000283628 2074 ntAPPRIS P3 TSL 2 BASIC17.54■□□□□ 0.4
COL7A1Q02388 SDCCAG3-201ENST00000298537 2314 ntTSL 1 (best) BASIC17.53■□□□□ 0.4
COL7A1Q02388 MPST-203ENST00000401419 1345 ntAPPRIS P1 TSL 1 (best) BASIC17.53■□□□□ 0.4
COL7A1Q02388 WBP1-203ENST00000409737 1110 ntAPPRIS ALT1 TSL 5 BASIC17.53■□□□□ 0.4
COL7A1Q02388 EMC9-201ENST00000216799 835 ntAPPRIS P1 TSL 1 (best) BASIC17.53■□□□□ 0.4
COL7A1Q02388 LBX2-202ENST00000377566 1186 ntAPPRIS P1 TSL 1 (best) BASIC17.53■□□□□ 0.4
COL7A1Q02388 AL031432.3-201ENST00000607698 485 ntBASIC17.53■□□□□ 0.4
COL7A1Q02388 DPF1-204ENST00000416611 2341 ntTSL 5 BASIC17.53■□□□□ 0.4
COL7A1Q02388 CCDC136-202ENST00000378685 1689 ntAPPRIS ALT2 TSL 2 BASIC17.53■□□□□ 0.4
COL7A1Q02388 CHST14-202ENST00000559991 1968 ntTSL 5 BASIC17.53■□□□□ 0.4
COL7A1Q02388 LAT-201ENST00000354453 1713 ntAPPRIS ALT2 TSL 5 BASIC17.52■□□□□ 0.4
COL7A1Q02388 CAMK1D-203ENST00000615792 1725 ntTSL 5 BASIC17.52■□□□□ 0.4
COL7A1Q02388 MIR5787-201ENST00000611784 55 ntBASIC17.52■□□□□ 0.4
COL7A1Q02388 PDK1-202ENST00000392571 1515 ntAPPRIS ALT2 TSL 1 (best) BASIC17.52■□□□□ 0.4
COL7A1Q02388 JMJD8-201ENST00000412368 2038 ntAPPRIS P2 TSL 1 (best) BASIC17.52■□□□□ 0.4
COL7A1Q02388 AC008105.3-203ENST00000591365 2238 ntTSL 2 BASIC17.52■□□□□ 0.4
COL7A1Q02388 H1FX-AS1-204ENST00000511998 917 ntTSL 5 BASIC17.52■□□□□ 0.4
COL7A1Q02388 ZNF263-204ENST00000573578 1636 ntTSL 5 BASIC17.52■□□□□ 0.39
COL7A1Q02388 ANGPTL6-201ENST00000253109 1900 ntAPPRIS P1 TSL 1 (best) BASIC17.52■□□□□ 0.39
COL7A1Q02388 PCMT1-201ENST00000367378 1293 ntAPPRIS P3 TSL 1 (best) BASIC17.51■□□□□ 0.39
COL7A1Q02388 NRL-205ENST00000560550 788 ntTSL 1 (best) BASIC17.51■□□□□ 0.39
COL7A1Q02388 ATP10A-207ENST00000619904 988 ntTSL 5 BASIC17.51■□□□□ 0.39
COL7A1Q02388 RASSF1-AS1-201ENST00000629828 790 ntBASIC17.51■□□□□ 0.39
COL7A1Q02388 RHOF-203ENST00000537171 1485 ntTSL 1 (best) BASIC17.51■□□□□ 0.39
COL7A1Q02388 FOSL1-202ENST00000448083 1427 ntTSL 2 BASIC17.51■□□□□ 0.39
COL7A1Q02388 ADRM1-205ENST00000620230 1361 ntTSL 5 BASIC17.51■□□□□ 0.39
COL7A1Q02388 CDKN2D-201ENST00000335766 1086 ntAPPRIS P1 TSL 1 (best) BASIC17.51■□□□□ 0.39
COL7A1Q02388 YTHDF1-201ENST00000370334 747 ntTSL 3 BASIC17.51■□□□□ 0.39
COL7A1Q02388 PRSS21-201ENST00000005995 1101 ntAPPRIS P1 TSL 1 (best) BASIC17.51■□□□□ 0.39
COL7A1Q02388 NDUFS3-206ENST00000528192 561 ntTSL 5 BASIC17.5■□□□□ 0.39
COL7A1Q02388 PABPN1-207ENST00000556821 1220 ntTSL 2 BASIC17.5■□□□□ 0.39
COL7A1Q02388 KLHL26-202ENST00000595182 522 ntTSL 4 BASIC17.5■□□□□ 0.39
COL7A1Q02388 LTB4R-202ENST00000396782 1627 ntAPPRIS P1 TSL 1 (best) BASIC17.5■□□□□ 0.39
COL7A1Q02388 COL13A1-210ENST00000517713 2007 ntAPPRIS ALT2 TSL 5 BASIC17.5■□□□□ 0.39
COL7A1Q02388 AP002414.2-202ENST00000590929 1450 ntBASIC17.5■□□□□ 0.39
COL7A1Q02388 ALKAL2-204ENST00000403610 1389 ntAPPRIS P1 TSL 1 (best) BASIC17.5■□□□□ 0.39
COL7A1Q02388 FAM162B-201ENST00000368557 1036 ntAPPRIS P1 TSL 1 (best) BASIC17.5■□□□□ 0.39
COL7A1Q02388 RSPH1-201ENST00000291536 1430 ntAPPRIS P1 TSL 1 (best) BASIC17.5■□□□□ 0.39
COL7A1Q02388 JMJD1C-AS1-201ENST00000609436 1335 ntBASIC17.5■□□□□ 0.39
COL7A1Q02388 PRICKLE4-201ENST00000394259 939 ntAPPRIS ALT2 TSL 5 BASIC17.49■□□□□ 0.39
COL7A1Q02388 CLIC3-203ENST00000494426 1017 ntAPPRIS P1 TSL 1 (best) BASIC17.49■□□□□ 0.39
COL7A1Q02388 TSPAN33-201ENST00000486685 1863 ntAPPRIS P1 TSL 1 (best) BASIC17.49■□□□□ 0.39
COL7A1Q02388 KRAS-204ENST00000557334 1052 ntTSL 5 BASIC17.49■□□□□ 0.39
COL7A1Q02388 SPATA5L1-208ENST00000638607 1863 ntTSL 2 BASIC17.49■□□□□ 0.39
COL7A1Q02388 SUMF1-202ENST00000383843 1447 ntTSL 2 BASIC17.48■□□□□ 0.39
COL7A1Q02388 RBFA-201ENST00000262197 1219 ntTSL 1 (best) BASIC17.48■□□□□ 0.39
COL7A1Q02388 CTF1-201ENST00000279804 1664 ntAPPRIS P3 TSL 1 (best) BASIC17.48■□□□□ 0.39
COL7A1Q02388 F8A1-201ENST00000610495 1713 ntAPPRIS P1 BASIC17.48■□□□□ 0.39
COL7A1Q02388 SETBP1-202ENST00000426838 1785 ntAPPRIS ALT2 TSL 1 (best) BASIC17.48■□□□□ 0.39
COL7A1Q02388 EMID1-202ENST00000404755 2049 ntTSL 5 BASIC17.48■□□□□ 0.39
COL7A1Q02388 PSKH1-202ENST00000570631 1509 ntTSL 1 (best) BASIC17.48■□□□□ 0.39
COL7A1Q02388 PARD6B-202ENST00000396039 522 ntTSL 1 (best) BASIC17.48■□□□□ 0.39
COL7A1Q02388 PRELID2-204ENST00000505416 738 ntAPPRIS P2 TSL 3 BASIC17.48■□□□□ 0.39
Retrieved 100 of 98,524 protein–RNA pairs in 141.3 ms