Protein–RNA interactions for Protein: P49917

LIG4, DNA ligase 4, humanhuman

Predictions only

Length 911 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
LIG4P49917 DUX4L18-201ENST00000553347 1267 ntBASIC26.37■■□□□ 1.81
LIG4P49917 RAB4B-203ENST00000594800 1173 ntAPPRIS P1 TSL 5 BASIC26.37■■□□□ 1.81
LIG4P49917 SHISA8-202ENST00000621082 1405 ntAPPRIS P2 TSL 5 BASIC26.37■■□□□ 1.81
LIG4P49917 RBM42-205ENST00000589871 1487 ntTSL 5 BASIC26.36■■□□□ 1.81
LIG4P49917 MSANTD2-201ENST00000239614 2495 ntTSL 2 BASIC26.36■■□□□ 1.81
LIG4P49917 ERN1-208ENST00000606895 2068 ntBASIC26.36■■□□□ 1.81
LIG4P49917 AC104002.3-202ENST00000557170 1100 ntTSL 3 BASIC26.36■■□□□ 1.81
LIG4P49917 BICDL2-203ENST00000572449 1984 ntAPPRIS P1 TSL 5 BASIC26.36■■□□□ 1.81
LIG4P49917 PEX26-202ENST00000399744 1672 ntAPPRIS P1 TSL 1 (best) BASIC26.35■■□□□ 1.81
LIG4P49917 AL033527.3-201ENST00000566366 1196 ntBASIC26.35■■□□□ 1.81
LIG4P49917 DLX2-202ENST00000466293 1852 ntTSL 2 BASIC26.34■■□□□ 1.81
LIG4P49917 DRAM2-211ENST00000539140 1883 ntAPPRIS P1 TSL 1 (best) BASIC26.34■■□□□ 1.81
LIG4P49917 AJAP1-201ENST00000378190 2383 ntAPPRIS P1 TSL 5 BASIC26.34■■□□□ 1.81
LIG4P49917 TMEM125-202ENST00000439858 1786 ntAPPRIS P1 TSL 2 BASIC26.34■■□□□ 1.81
LIG4P49917 LINC01233-202ENST00000598832 568 ntTSL 2 BASIC26.34■■□□□ 1.81
LIG4P49917 HNRNPUL1-221ENST00000617305 1018 ntTSL 1 (best) BASIC26.34■■□□□ 1.81
LIG4P49917 LYPLA1-215ENST00000618914 2482 ntTSL 5 BASIC26.34■■□□□ 1.81
LIG4P49917 ZNF219-201ENST00000360947 3071 ntAPPRIS P1 TSL 1 (best) BASIC26.34■■□□□ 1.81
LIG4P49917 C1QTNF1-206ENST00000579760 1672 ntAPPRIS P1 TSL 1 (best) BASIC26.34■■□□□ 1.81
LIG4P49917 AC011511.4-201ENST00000586529 1850 ntAPPRIS P1 TSL 5 BASIC26.34■■□□□ 1.81
LIG4P49917 CHKA-202ENST00000356135 1755 ntAPPRIS ALT2 TSL 1 (best) BASIC26.33■■□□□ 1.81
LIG4P49917 ATPAF1-213ENST00000574428 1760 ntTSL 1 (best) BASIC26.33■■□□□ 1.81
LIG4P49917 MAGI2-215ENST00000628980 6212 ntTSL 5 BASIC26.33■■□□□ 1.81
LIG4P49917 AC016910.1-201ENST00000422799 1046 ntTSL 1 (best) BASIC26.33■■□□□ 1.81
LIG4P49917 KLF16-204ENST00000617223 1133 ntAPPRIS P1 TSL 1 (best) BASIC26.33■■□□□ 1.81
LIG4P49917 BIN1-211ENST00000409400 2143 ntTSL 1 (best) BASIC26.33■■□□□ 1.81
LIG4P49917 PHF23-212ENST00000576955 1944 ntTSL 2 BASIC26.33■■□□□ 1.81
LIG4P49917 CCDC71L-201ENST00000315965 1575 ntAPPRIS ALT2 TSL 5 BASIC26.33■■□□□ 1.8
LIG4P49917 OSCAR-202ENST00000351806 1375 ntAPPRIS ALT2 TSL 1 (best) BASIC26.33■■□□□ 1.8
LIG4P49917 OTUD5-208ENST00000610466 2487 ntTSL 5 BASIC26.32■■□□□ 1.8
LIG4P49917 DGAT1-201ENST00000332324 1473 ntTSL 5 BASIC26.32■■□□□ 1.8
LIG4P49917 ABHD17B-202ENST00000377041 1312 ntAPPRIS P4 TSL 1 (best) BASIC26.32■■□□□ 1.8
LIG4P49917 AC091060.1-201ENST00000623524 1766 ntBASIC26.31■■□□□ 1.8
LIG4P49917 LY6H-201ENST00000342752 951 ntAPPRIS ALT2 TSL 1 (best) BASIC26.31■■□□□ 1.8
LIG4P49917 LY6H-202ENST00000414417 1056 ntAPPRIS ALT2 TSL 1 (best) BASIC26.31■■□□□ 1.8
LIG4P49917 LY6H-203ENST00000430474 925 ntAPPRIS P3 TSL 3 BASIC26.31■■□□□ 1.8
LIG4P49917 UBALD2-201ENST00000327490 1593 ntAPPRIS P1 TSL 1 (best) BASIC26.31■■□□□ 1.8
LIG4P49917 KAZALD1-201ENST00000370200 1913 ntAPPRIS P1 TSL 1 (best) BASIC26.31■■□□□ 1.8
LIG4P49917 NAT14-201ENST00000205194 1536 ntAPPRIS P1 TSL 1 (best) BASIC26.3■■□□□ 1.8
LIG4P49917 C17orf49-201ENST00000439424 850 ntAPPRIS P3 TSL 1 (best) BASIC26.3■■□□□ 1.8
LIG4P49917 BSCL2-205ENST00000403550 1693 ntAPPRIS P3 TSL 5 BASIC26.3■■□□□ 1.8
LIG4P49917 CCND3-203ENST00000372991 2085 ntAPPRIS P1 TSL 1 (best) BASIC26.3■■□□□ 1.8
LIG4P49917 AKAP17A-202ENST00000381261 2187 ntAPPRIS ALT2 TSL 1 (best) BASIC26.3■■□□□ 1.8
LIG4P49917 P2RX4-203ENST00000359949 1836 ntTSL 5 BASIC26.3■■□□□ 1.8
LIG4P49917 PARL-202ENST00000317096 1414 ntAPPRIS P1 TSL 1 (best) BASIC26.3■■□□□ 1.8
LIG4P49917 CDK2AP1-201ENST00000261692 1625 ntAPPRIS P1 TSL 1 (best) BASIC26.29■■□□□ 1.8
LIG4P49917 LTB4R-202ENST00000396782 1627 ntAPPRIS P1 TSL 1 (best) BASIC26.29■■□□□ 1.8
LIG4P49917 PAIP1-208ENST00000514514 1603 ntTSL 5 BASIC26.29■■□□□ 1.8
LIG4P49917 TWF2-201ENST00000305533 1718 ntAPPRIS P1 TSL 1 (best) BASIC26.29■■□□□ 1.8
LIG4P49917 RBFA-201ENST00000262197 1219 ntTSL 1 (best) BASIC26.29■■□□□ 1.8
LIG4P49917 TNFRSF12A-201ENST00000326577 1033 ntAPPRIS P1 TSL 1 (best) BASIC26.29■■□□□ 1.8
LIG4P49917 CCDC37-AS1-202ENST00000506660 986 ntTSL 1 (best) BASIC26.29■■□□□ 1.8
LIG4P49917 AC010501.1-201ENST00000606270 1962 ntBASIC26.29■■□□□ 1.8
LIG4P49917 CADPS-215ENST00000490353 2669 ntTSL 5 BASIC26.29■■□□□ 1.8
LIG4P49917 AHSA2-201ENST00000357022 2437 ntTSL 1 (best) BASIC26.28■■□□□ 1.8
LIG4P49917 COPRS-201ENST00000302362 968 ntAPPRIS P1 TSL 1 (best) BASIC26.28■■□□□ 1.8
LIG4P49917 GUK1-208ENST00000366728 842 ntTSL 2 BASIC26.28■■□□□ 1.8
LIG4P49917 IDNK-203ENST00000405990 629 ntTSL 2 BASIC26.28■■□□□ 1.8
LIG4P49917 QDPR-208ENST00000513615 1188 ntTSL 2 BASIC26.28■■□□□ 1.8
LIG4P49917 AC148477.1-201ENST00000537720 476 ntTSL 3 BASIC26.28■■□□□ 1.8
LIG4P49917 BTBD6-203ENST00000392554 2176 ntAPPRIS P2 TSL 1 (best) BASIC26.28■■□□□ 1.8
LIG4P49917 ANKRD9-204ENST00000559651 1444 ntAPPRIS P1 TSL 1 (best) BASIC26.28■■□□□ 1.8
LIG4P49917 RAPGEF1-203ENST00000372195 6256 ntTSL 1 (best) BASIC26.28■■□□□ 1.8
LIG4P49917 USP2-204ENST00000525735 1704 ntAPPRIS ALT1 TSL 1 (best) BASIC26.28■■□□□ 1.8
LIG4P49917 KRT18P10-201ENST00000388836 1287 ntBASIC26.27■■□□□ 1.8
LIG4P49917 NKX2-5-204ENST00000521848 1027 ntTSL 2 BASIC26.27■■□□□ 1.8
LIG4P49917 TMEM203-201ENST00000343666 1557 ntAPPRIS P1 BASIC26.27■■□□□ 1.8
LIG4P49917 RDH14-201ENST00000381249 1587 ntAPPRIS P1 TSL 1 (best) BASIC26.27■■□□□ 1.8
LIG4P49917 GYG2-205ENST00000398806 1956 ntAPPRIS ALT2 TSL 1 (best) BASIC26.26■■□□□ 1.79
LIG4P49917 TCEA1-213ENST00000640041 1171 ntTSL 5 BASIC26.26■■□□□ 1.79
LIG4P49917 FGF19-201ENST00000294312 2447 ntAPPRIS P1 TSL 1 (best) BASIC26.26■■□□□ 1.79
LIG4P49917 SNHG7-204ENST00000447221 2157 ntTSL 2 BASIC26.26■■□□□ 1.79
LIG4P49917 OXSR1-203ENST00000446845 1908 ntTSL 5 BASIC26.26■■□□□ 1.79
LIG4P49917 YRDC-201ENST00000373044 1826 ntAPPRIS P1 TSL 1 (best) BASIC26.25■■□□□ 1.79
LIG4P49917 TTBK2-205ENST00000567274 1777 ntTSL 5 BASIC26.25■■□□□ 1.79
LIG4P49917 ZNF747-203ENST00000568028 1511 ntAPPRIS P1 TSL 2 BASIC26.25■■□□□ 1.79
LIG4P49917 GSK3A-201ENST00000222330 2188 ntAPPRIS P2 TSL 1 (best) BASIC26.25■■□□□ 1.79
LIG4P49917 TMEM191C-206ENST00000432134 1129 ntAPPRIS ALT2 TSL 5 BASIC26.25■■□□□ 1.79
LIG4P49917 PYY2-202ENST00000441253 1076 ntTSL 1 (best) BASIC26.25■■□□□ 1.79
LIG4P49917 ERFE-207ENST00000546354 1065 ntAPPRIS P2 TSL 1 (best) BASIC26.25■■□□□ 1.79
LIG4P49917 TBX2-AS1-203ENST00000590421 861 ntTSL 2 BASIC26.25■■□□□ 1.79
LIG4P49917 ACSS1-202ENST00000376726 2244 ntTSL 2 BASIC26.24■■□□□ 1.79
LIG4P49917 ENHO-201ENST00000399775 1082 ntAPPRIS P1 TSL 2 BASIC26.24■■□□□ 1.79
LIG4P49917 AC096887.2-201ENST00000623443 1957 ntBASIC26.24■■□□□ 1.79
LIG4P49917 ZDHHC16-206ENST00000370854 1798 ntAPPRIS P4 TSL 1 (best) BASIC26.23■■□□□ 1.79
LIG4P49917 SLC52A2-208ENST00000527078 1790 ntAPPRIS P1 TSL 5 BASIC26.23■■□□□ 1.79
LIG4P49917 AC145676.1-201ENST00000514988 2004 ntBASIC26.23■■□□□ 1.79
LIG4P49917 FAM98C-202ENST00000343358 1006 ntTSL 1 (best) BASIC26.23■■□□□ 1.79
LIG4P49917 SMKR1-201ENST00000462322 1035 ntAPPRIS P1 TSL 1 (best) BASIC26.23■■□□□ 1.79
LIG4P49917 HYI-210ENST00000486909 905 ntTSL 5 BASIC26.23■■□□□ 1.79
LIG4P49917 DUSP8P4-201ENST00000399538 1761 ntBASIC26.23■■□□□ 1.79
LIG4P49917 SNAI3-AS1-204ENST00000567997 2048 ntBASIC26.22■■□□□ 1.79
LIG4P49917 FBXL20-203ENST00000577399 1620 ntTSL 5 BASIC26.22■■□□□ 1.79
LIG4P49917 LINC01770-201ENST00000417917 634 ntTSL 2 BASIC26.22■■□□□ 1.79
LIG4P49917 RPS2P7-201ENST00000447334 885 ntBASIC26.22■■□□□ 1.79
LIG4P49917 AC139795.1-202ENST00000500444 432 ntBASIC26.22■■□□□ 1.79
LIG4P49917 LMAN2-208ENST00000515209 1149 ntAPPRIS ALT2 TSL 3 BASIC26.22■■□□□ 1.79
LIG4P49917 DSG2-202ENST00000585206 1081 ntTSL 2 BASIC26.22■■□□□ 1.79
LIG4P49917 IFNL4-201ENST00000606380 1637 ntAPPRIS P5 TSL 1 (best) BASIC26.21■■□□□ 1.79
LIG4P49917 KIAA2013-201ENST00000376572 2815 ntAPPRIS P1 TSL 1 (best) BASIC26.21■■□□□ 1.79
Retrieved 100 of 98,524 protein–RNA pairs in 11.3 ms