Protein–RNA interactions for Protein: P48061

CXCL12, Stromal cell-derived factor 1, humanhuman

Predictions only

Length 93 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CXCL12P48061 CTDSP2-203ENST00000547701 988 ntTSL 1 (best) BASIC24.35■■□□□ 1.49
CXCL12P48061 MMP25-AS1-209ENST00000576250 779 ntTSL 5 BASIC24.35■■□□□ 1.49
CXCL12P48061 CBLN1-201ENST00000219197 2435 ntAPPRIS P1 TSL 1 (best) BASIC24.35■■□□□ 1.49
CXCL12P48061 CCDC136-206ENST00000464832 1720 ntAPPRIS ALT2 TSL 5 BASIC24.35■■□□□ 1.49
CXCL12P48061 GNAI2-202ENST00000313601 2464 ntAPPRIS P1 TSL 1 (best) BASIC24.35■■□□□ 1.49
CXCL12P48061 TMEM134-202ENST00000393877 823 ntTSL 1 (best) BASIC24.34■■□□□ 1.49
CXCL12P48061 PCGF3-202ENST00000400151 1175 ntTSL 2 BASIC24.34■■□□□ 1.49
CXCL12P48061 RPP21-222ENST00000433076 577 ntTSL 2 BASIC24.34■■□□□ 1.49
CXCL12P48061 FEZ1-205ENST00000524435 750 ntTSL 2 BASIC24.34■■□□□ 1.49
CXCL12P48061 CALM1-203ENST00000544280 1064 ntTSL 1 (best) BASIC24.34■■□□□ 1.49
CXCL12P48061 MTCH1-202ENST00000373627 2057 ntAPPRIS P1 TSL 1 (best) BASIC24.34■■□□□ 1.49
CXCL12P48061 EMC10-202ENST00000376918 2014 ntAPPRIS ALT2 TSL 1 (best) BASIC24.34■■□□□ 1.49
CXCL12P48061 C4orf36-201ENST00000295898 881 ntAPPRIS P1 TSL 1 (best) BASIC24.33■■□□□ 1.49
CXCL12P48061 AC131281.2-201ENST00000520478 145 ntBASIC24.33■■□□□ 1.49
CXCL12P48061 PROC-203ENST00000409048 1586 ntTSL 5 BASIC24.33■■□□□ 1.48
CXCL12P48061 UBE2J2-202ENST00000349431 1733 ntAPPRIS P1 TSL 1 (best) BASIC24.32■■□□□ 1.48
CXCL12P48061 CAPNS1-215ENST00000628018 1509 ntAPPRIS ALT2 TSL 5 BASIC24.32■■□□□ 1.48
CXCL12P48061 BMP8A-201ENST00000331593 1692 ntAPPRIS P1 TSL 1 (best) BASIC24.32■■□□□ 1.48
CXCL12P48061 GBX1-201ENST00000297537 1092 ntAPPRIS P1 TSL 1 (best) BASIC24.32■■□□□ 1.48
CXCL12P48061 RHOF-203ENST00000537171 1485 ntTSL 1 (best) BASIC24.32■■□□□ 1.48
CXCL12P48061 CCDC61-204ENST00000595358 1817 ntAPPRIS P2 TSL 5 BASIC24.31■■□□□ 1.48
CXCL12P48061 NAA30-203ENST00000555166 1294 ntAPPRIS ALT2 TSL 2 BASIC24.31■■□□□ 1.48
CXCL12P48061 PPM1J-201ENST00000309276 1863 ntAPPRIS P1 TSL 1 (best) BASIC24.3■■□□□ 1.48
CXCL12P48061 FAM162B-201ENST00000368557 1036 ntAPPRIS P1 TSL 1 (best) BASIC24.3■■□□□ 1.48
CXCL12P48061 AL136116.3-201ENST00000402907 1138 ntBASIC24.3■■□□□ 1.48
CXCL12P48061 AC090587.2-201ENST00000430222 527 ntTSL 2 BASIC24.3■■□□□ 1.48
CXCL12P48061 NKIRAS2-209ENST00000479407 992 ntTSL 3 BASIC24.3■■□□□ 1.48
CXCL12P48061 CLIC3-203ENST00000494426 1017 ntAPPRIS P1 TSL 1 (best) BASIC24.3■■□□□ 1.48
CXCL12P48061 DCBLD1-201ENST00000296955 1979 ntAPPRIS P2 TSL 1 (best) BASIC24.3■■□□□ 1.48
CXCL12P48061 CLK2-201ENST00000355560 2120 ntAPPRIS ALT1 TSL 5 BASIC24.29■■□□□ 1.48
CXCL12P48061 CRTAP-202ENST00000449224 1811 ntAPPRIS ALT2 TSL 2 BASIC24.29■■□□□ 1.48
CXCL12P48061 HDHD5-203ENST00000399852 1118 ntTSL 3 BASIC24.29■■□□□ 1.48
CXCL12P48061 CLEC2L-201ENST00000422142 1359 ntAPPRIS P2 TSL 3 BASIC24.29■■□□□ 1.48
CXCL12P48061 PCK2-202ENST00000396973 1830 ntTSL 1 (best) BASIC24.28■■□□□ 1.48
CXCL12P48061 DUSP22-201ENST00000344450 1485 ntTSL 1 (best) BASIC24.28■■□□□ 1.48
CXCL12P48061 JMJD8-201ENST00000412368 2038 ntAPPRIS P2 TSL 1 (best) BASIC24.28■■□□□ 1.48
CXCL12P48061 SIRT3-201ENST00000382743 2543 ntAPPRIS P2 TSL 1 (best) BASIC24.27■■□□□ 1.48
CXCL12P48061 LFNG-201ENST00000222725 2377 ntAPPRIS P4 TSL 5 BASIC24.27■■□□□ 1.48
CXCL12P48061 PPP1R14A-205ENST00000591585 949 ntTSL 2 BASIC24.27■■□□□ 1.48
CXCL12P48061 KLHL26-202ENST00000595182 522 ntTSL 4 BASIC24.27■■□□□ 1.48
CXCL12P48061 AL445237.1-202ENST00000604581 425 ntTSL 5 BASIC24.27■■□□□ 1.48
CXCL12P48061 CLDN15-201ENST00000308344 1370 ntAPPRIS P1 TSL 1 (best) BASIC24.27■■□□□ 1.48
CXCL12P48061 PYCARD-202ENST00000350605 696 ntTSL 1 (best) BASIC24.26■■□□□ 1.47
CXCL12P48061 KRTAP5-1-201ENST00000382171 942 ntAPPRIS P1 BASIC24.26■■□□□ 1.47
CXCL12P48061 IL15RA-209ENST00000397255 759 ntAPPRIS ALT2 TSL 5 BASIC24.26■■□□□ 1.47
CXCL12P48061 IL15RA-216ENST00000530685 660 ntTSL 5 BASIC24.26■■□□□ 1.47
CXCL12P48061 CGREF1-203ENST00000402394 1906 ntAPPRIS P2 TSL 2 BASIC24.25■■□□□ 1.47
CXCL12P48061 KCTD17-202ENST00000403888 1763 ntAPPRIS ALT2 TSL 1 (best) BASIC24.25■■□□□ 1.47
CXCL12P48061 SERTAD4-AS1-202ENST00000475406 591 ntTSL 2 BASIC24.25■■□□□ 1.47
CXCL12P48061 AC005551.1-201ENST00000641816 493 ntAPPRIS P1 BASIC24.25■■□□□ 1.47
CXCL12P48061 AGFG1-205ENST00000409979 2089 ntAPPRIS ALT1 TSL 5 BASIC24.25■■□□□ 1.47
CXCL12P48061 SLC25A1-202ENST00000451283 1514 ntTSL 2 BASIC24.25■■□□□ 1.47
CXCL12P48061 LTB4R-202ENST00000396782 1627 ntAPPRIS P1 TSL 1 (best) BASIC24.24■■□□□ 1.47
CXCL12P48061 DHRS13-201ENST00000378895 1921 ntAPPRIS P1 TSL 1 (best) BASIC24.24■■□□□ 1.47
CXCL12P48061 ARPC4-208ENST00000498623 942 ntTSL 2 BASIC24.24■■□□□ 1.47
CXCL12P48061 AC010997.5-201ENST00000609182 354 ntBASIC24.24■■□□□ 1.47
CXCL12P48061 GDF6-202ENST00000620978 973 ntTSL 1 (best) BASIC24.24■■□□□ 1.47
CXCL12P48061 Z98883.1-202ENST00000635107 1289 ntTSL 5 BASIC24.24■■□□□ 1.47
CXCL12P48061 HOMER3-203ENST00000433218 1418 ntAPPRIS ALT1 TSL 5 BASIC24.24■■□□□ 1.47
CXCL12P48061 LRRC61-205ENST00000493307 1456 ntAPPRIS P1 TSL 5 BASIC24.24■■□□□ 1.47
CXCL12P48061 REEP6-201ENST00000233596 1794 ntAPPRIS P2 TSL 1 (best) BASIC24.24■■□□□ 1.47
CXCL12P48061 CFAP77-202ENST00000393215 901 ntAPPRIS ALT2 TSL 5 BASIC24.23■■□□□ 1.47
CXCL12P48061 TMEM80-201ENST00000397510 1094 ntAPPRIS P2 TSL 5 BASIC24.23■■□□□ 1.47
CXCL12P48061 AL117332.1-201ENST00000622628 974 ntBASIC24.23■■□□□ 1.47
CXCL12P48061 AC093762.1-201ENST00000641981 837 ntAPPRIS P1 BASIC24.23■■□□□ 1.47
CXCL12P48061 RBM33-201ENST00000287912 1404 ntTSL 2 BASIC24.23■■□□□ 1.47
CXCL12P48061 AL022341.2-201ENST00000573609 1417 ntTSL 3 BASIC24.23■■□□□ 1.47
CXCL12P48061 TAZ-216ENST00000613002 1485 ntTSL 1 (best) BASIC24.23■■□□□ 1.47
CXCL12P48061 AKT1S1-201ENST00000344175 1760 ntAPPRIS P1 TSL 3 BASIC24.23■■□□□ 1.47
CXCL12P48061 AL449106.1-201ENST00000608517 1980 ntBASIC24.23■■□□□ 1.47
CXCL12P48061 SDCCAG3-201ENST00000298537 2314 ntTSL 1 (best) BASIC24.23■■□□□ 1.47
CXCL12P48061 CASP9-201ENST00000333868 2019 ntAPPRIS P2 TSL 1 (best) BASIC24.22■■□□□ 1.47
CXCL12P48061 NRARP-201ENST00000356628 1770 ntAPPRIS P1 BASIC24.22■■□□□ 1.47
CXCL12P48061 TYMP-203ENST00000395680 1608 ntAPPRIS P3 TSL 1 (best) BASIC24.22■■□□□ 1.47
CXCL12P48061 TYMP-204ENST00000395681 1604 ntAPPRIS ALT2 TSL 1 (best) BASIC24.22■■□□□ 1.47
CXCL12P48061 COMT-204ENST00000403710 1548 ntAPPRIS P3 TSL 5 BASIC24.22■■□□□ 1.47
CXCL12P48061 MIR3621-201ENST00000580529 85 ntBASIC24.22■■□□□ 1.47
CXCL12P48061 CENPVL1-201ENST00000602548 1620 ntAPPRIS P1 BASIC24.21■■□□□ 1.47
CXCL12P48061 CENPVL2-201ENST00000634648 1620 ntAPPRIS P1 BASIC24.21■■□□□ 1.47
CXCL12P48061 TSPAN17-204ENST00000503045 1019 ntTSL 5 BASIC24.21■■□□□ 1.47
CXCL12P48061 MIR4281-201ENST00000580852 62 ntBASIC24.21■■□□□ 1.47
CXCL12P48061 SLC16A10-206ENST00000612036 1231 ntTSL 5 BASIC24.21■■□□□ 1.47
CXCL12P48061 RAD21-AS1-201ENST00000521487 2010 ntTSL 1 (best) BASIC24.21■■□□□ 1.47
CXCL12P48061 MXD3-201ENST00000423571 1534 ntTSL 2 BASIC24.2■■□□□ 1.47
CXCL12P48061 AL357078.1-201ENST00000448344 310 ntTSL 4 BASIC24.2■■□□□ 1.46
CXCL12P48061 AC005837.3-201ENST00000612163 286 ntBASIC24.2■■□□□ 1.46
CXCL12P48061 FAM228B-208ENST00000613899 1238 ntAPPRIS ALT2 TSL 1 (best) BASIC24.2■■□□□ 1.46
CXCL12P48061 MIR6724-1-201ENST00000616420 92 ntBASIC24.2■■□□□ 1.46
CXCL12P48061 MIR6724-2-201ENST00000616483 92 ntBASIC24.2■■□□□ 1.46
CXCL12P48061 MIR6724-4-201ENST00000617390 92 ntBASIC24.2■■□□□ 1.46
CXCL12P48061 AC110285.6-201ENST00000617652 491 ntBASIC24.2■■□□□ 1.46
CXCL12P48061 MIR6724-3-201ENST00000622482 92 ntBASIC24.2■■□□□ 1.46
CXCL12P48061 FBXO7-206ENST00000452138 1535 ntTSL 2 BASIC24.2■■□□□ 1.46
CXCL12P48061 FOXF2-201ENST00000259806 2187 ntAPPRIS P1 TSL 1 (best) BASIC24.19■■□□□ 1.46
CXCL12P48061 TMC6-218ENST00000591436 1155 ntTSL 1 (best) BASIC24.19■■□□□ 1.46
CXCL12P48061 PRSS21-201ENST00000005995 1101 ntAPPRIS P1 TSL 1 (best) BASIC24.19■■□□□ 1.46
CXCL12P48061 AL356740.2-201ENST00000601559 647 ntBASIC24.19■■□□□ 1.46
CXCL12P48061 NFU1-203ENST00000410022 1467 ntAPPRIS P3 TSL 1 (best) BASIC24.19■■□□□ 1.46
CXCL12P48061 ZNF428-201ENST00000300811 1412 ntAPPRIS P1 TSL 1 (best) BASIC24.18■■□□□ 1.46
CXCL12P48061 SLC35B2-204ENST00000537814 1715 ntTSL 2 BASIC24.18■■□□□ 1.46
Retrieved 100 of 98,524 protein–RNA pairs in 17.1 ms