Protein–RNA interactions for Protein: P30531

SLC6A1, Sodium- and chloride-dependent GABA transporter 1, humanhuman

Predictions only

Length 599 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SLC6A1P30531 MAD2L2-205ENST00000376669 864 ntTSL 3 BASIC20.66■□□□□ 0.9
SLC6A1P30531 AC004540.2-201ENST00000451368 611 ntTSL 2 BASIC20.66■□□□□ 0.9
SLC6A1P30531 TRAM2-AS1-201ENST00000453216 664 ntTSL 3 BASIC20.66■□□□□ 0.9
SLC6A1P30531 AC108673.1-201ENST00000510422 1159 ntBASIC20.66■□□□□ 0.9
SLC6A1P30531 MARCKSL1-201ENST00000329421 1699 ntAPPRIS P1 TSL 1 (best) BASIC20.66■□□□□ 0.9
SLC6A1P30531 MYCL-201ENST00000372815 1944 ntTSL 1 (best) BASIC20.66■□□□□ 0.9
SLC6A1P30531 ZDHHC1-201ENST00000348579 2047 ntAPPRIS P2 TSL 1 (best) BASIC20.66■□□□□ 0.9
SLC6A1P30531 CDIPT-201ENST00000219789 2353 ntAPPRIS P1 TSL 1 (best) BASIC20.65■□□□□ 0.9
SLC6A1P30531 KRT72-202ENST00000354310 1764 ntTSL 2 BASIC20.65■□□□□ 0.9
SLC6A1P30531 FAM181A-204ENST00000557000 1652 ntAPPRIS P1 TSL 1 (best) BASIC20.65■□□□□ 0.9
SLC6A1P30531 MNX1-207ENST00000543409 1620 ntAPPRIS ALT2 TSL 1 (best) BASIC20.65■□□□□ 0.9
SLC6A1P30531 SUGCT-209ENST00000628514 1591 ntAPPRIS P4 TSL 1 (best) BASIC20.65■□□□□ 0.9
SLC6A1P30531 NXNL1-201ENST00000301944 946 ntAPPRIS P1 TSL 1 (best) BASIC20.65■□□□□ 0.9
SLC6A1P30531 FAM21EP-202ENST00000456967 2177 ntTSL 2 BASIC20.65■□□□□ 0.9
SLC6A1P30531 C1QTNF1-206ENST00000579760 1672 ntAPPRIS P1 TSL 1 (best) BASIC20.64■□□□□ 0.9
SLC6A1P30531 ATP6V0A2-209ENST00000613625 1620 ntTSL 1 (best) BASIC20.64■□□□□ 0.9
SLC6A1P30531 AC104109.3-201ENST00000519718 483 ntAPPRIS P1 TSL 5 BASIC20.64■□□□□ 0.89
SLC6A1P30531 TXNL4A-210ENST00000591711 669 ntTSL 2 BASIC20.64■□□□□ 0.89
SLC6A1P30531 FSD1-204ENST00000597590 1634 ntTSL 5 BASIC20.64■□□□□ 0.89
SLC6A1P30531 NTN3-201ENST00000293973 1986 ntAPPRIS P1 TSL 1 (best) BASIC20.63■□□□□ 0.89
SLC6A1P30531 NKX2-3-202ENST00000622383 1986 ntTSL 5 BASIC20.63■□□□□ 0.89
SLC6A1P30531 AC096887.2-201ENST00000623443 1957 ntBASIC20.63■□□□□ 0.89
SLC6A1P30531 DUSP8P5-201ENST00000422884 1815 ntBASIC20.63■□□□□ 0.89
SLC6A1P30531 VAX2-201ENST00000234392 1147 ntAPPRIS P1 TSL 1 (best) BASIC20.63■□□□□ 0.89
SLC6A1P30531 AP000547.3-202ENST00000592107 1019 ntTSL 1 (best) BASIC20.63■□□□□ 0.89
SLC6A1P30531 LDB1-201ENST00000361198 2285 ntAPPRIS P1 TSL 1 (best) BASIC20.63■□□□□ 0.89
SLC6A1P30531 IRX5-201ENST00000320990 2061 ntAPPRIS ALT1 TSL 1 (best) BASIC20.63■□□□□ 0.89
SLC6A1P30531 TMEM150A-202ENST00000334462 1518 ntAPPRIS P1 TSL 1 (best) BASIC20.63■□□□□ 0.89
SLC6A1P30531 MSX2-201ENST00000239243 2241 ntAPPRIS P1 TSL 1 (best) BASIC20.62■□□□□ 0.89
SLC6A1P30531 PDIA6-207ENST00000540494 2509 ntAPPRIS ALT1 TSL 2 BASIC20.62■□□□□ 0.89
SLC6A1P30531 ARHGDIG-201ENST00000219409 949 ntAPPRIS P1 TSL 1 (best) BASIC20.62■□□□□ 0.89
SLC6A1P30531 ADAD2-202ENST00000315906 1995 ntAPPRIS ALT2 TSL 1 (best) BASIC20.62■□□□□ 0.89
SLC6A1P30531 BARHL1-201ENST00000263610 2341 ntAPPRIS P1 TSL 1 (best) BASIC20.62■□□□□ 0.89
SLC6A1P30531 TSEN34-201ENST00000302937 2294 ntAPPRIS P1 TSL 1 (best) BASIC20.62■□□□□ 0.89
SLC6A1P30531 RITA1-203ENST00000552495 1898 ntTSL 2 BASIC20.62■□□□□ 0.89
SLC6A1P30531 PPP2R2C-203ENST00000382599 1807 ntAPPRIS P1 TSL 1 (best) BASIC20.62■□□□□ 0.89
SLC6A1P30531 MAPK8IP1P1-201ENST00000574657 1439 ntBASIC20.61■□□□□ 0.89
SLC6A1P30531 MPST-206ENST00000429360 1331 ntTSL 1 (best) BASIC20.61■□□□□ 0.89
SLC6A1P30531 BCAP31-201ENST00000345046 1589 ntAPPRIS P1 TSL 1 (best) BASIC20.61■□□□□ 0.89
SLC6A1P30531 ZNF706-207ENST00000519882 959 ntAPPRIS P1 TSL 3 BASIC20.61■□□□□ 0.89
SLC6A1P30531 ZNF706-213ENST00000521272 732 ntAPPRIS P1 TSL 5 BASIC20.61■□□□□ 0.89
SLC6A1P30531 MIR7108-201ENST00000614319 87 ntBASIC20.61■□□□□ 0.89
SLC6A1P30531 SAE1-209ENST00000598840 1831 ntTSL 5 BASIC20.61■□□□□ 0.89
SLC6A1P30531 MROH6-211ENST00000534459 1789 ntAPPRIS ALT2 TSL 2 BASIC20.61■□□□□ 0.89
SLC6A1P30531 ANO1-202ENST00000355303 4790 ntAPPRIS P2 TSL 1 (best) BASIC20.61■□□□□ 0.89
SLC6A1P30531 SLC25A10-202ENST00000350690 1885 ntAPPRIS P1 TSL 1 (best) BASIC20.6■□□□□ 0.89
SLC6A1P30531 WHAMMP2-203ENST00000563942 1603 ntBASIC20.6■□□□□ 0.89
SLC6A1P30531 KCNAB3-201ENST00000303790 2458 ntAPPRIS P1 TSL 1 (best) BASIC20.6■□□□□ 0.89
SLC6A1P30531 DUX4L29-201ENST00000425409 679 ntBASIC20.6■□□□□ 0.89
SLC6A1P30531 U2AF2-206ENST00000590551 1104 ntTSL 3 BASIC20.6■□□□□ 0.89
SLC6A1P30531 USF3-203ENST00000491165 2133 ntAPPRIS ALT2 TSL 1 (best) BASIC20.6■□□□□ 0.89
SLC6A1P30531 LSR-201ENST00000347609 1880 ntAPPRIS ALT2 TSL 1 (best) BASIC20.6■□□□□ 0.89
SLC6A1P30531 ZFYVE28-202ENST00000503000 1874 ntTSL 1 (best) BASIC20.6■□□□□ 0.89
SLC6A1P30531 LSR-213ENST00000605618 1885 ntAPPRIS ALT2 TSL 1 (best) BASIC20.6■□□□□ 0.89
SLC6A1P30531 GTF3C4-202ENST00000483873 1417 ntTSL 3 BASIC20.6■□□□□ 0.89
SLC6A1P30531 PCSK6-215ENST00000611967 3336 ntTSL 1 (best) BASIC20.6■□□□□ 0.89
SLC6A1P30531 BFSP1-202ENST00000377873 2207 ntAPPRIS P1 TSL 1 (best) BASIC20.59■□□□□ 0.89
SLC6A1P30531 MYBL2-201ENST00000217026 2639 ntAPPRIS P1 TSL 1 (best) BASIC20.59■□□□□ 0.89
SLC6A1P30531 PHF23-212ENST00000576955 1944 ntTSL 2 BASIC20.59■□□□□ 0.89
SLC6A1P30531 PPP1R12C-201ENST00000263433 2924 ntAPPRIS P1 TSL 1 (best) BASIC20.59■□□□□ 0.89
SLC6A1P30531 RYK-208ENST00000620660 2942 ntAPPRIS P3 TSL 1 (best) BASIC20.59■□□□□ 0.89
SLC6A1P30531 ASRGL1-202ENST00000415229 2270 ntAPPRIS P1 TSL 1 (best) BASIC20.59■□□□□ 0.89
SLC6A1P30531 DAZAP1-205ENST00000587079 2086 ntAPPRIS ALT1 TSL 5 BASIC20.59■□□□□ 0.89
SLC6A1P30531 UBE2A-207ENST00000628549 934 ntTSL 2 BASIC20.59■□□□□ 0.89
SLC6A1P30531 PCSK6-220ENST00000622483 3132 ntAPPRIS ALT2 TSL 1 (best) BASIC20.59■□□□□ 0.89
SLC6A1P30531 MAGED2-206ENST00000375068 2189 ntAPPRIS P2 TSL 1 (best) BASIC20.59■□□□□ 0.89
SLC6A1P30531 GP1BB-201ENST00000366425 1553 ntAPPRIS P1 TSL 1 (best) BASIC20.59■□□□□ 0.89
SLC6A1P30531 DCUN1D5-201ENST00000260247 1337 ntAPPRIS P1 TSL 1 (best) BASIC20.58■□□□□ 0.89
SLC6A1P30531 SCRT2-201ENST00000246104 3577 ntAPPRIS P1 TSL 1 (best) BASIC20.58■□□□□ 0.89
SLC6A1P30531 KIF2A-202ENST00000401507 2539 ntAPPRIS P1 TSL 1 (best) BASIC20.58■□□□□ 0.89
SLC6A1P30531 NRG3-201ENST00000372141 2158 ntAPPRIS P3 TSL 1 (best) BASIC20.58■□□□□ 0.89
SLC6A1P30531 FBXW4-201ENST00000331272 2483 ntAPPRIS P1 TSL 1 (best) BASIC20.58■□□□□ 0.89
SLC6A1P30531 MFAP2-202ENST00000375535 1260 ntTSL 1 (best) BASIC20.58■□□□□ 0.89
SLC6A1P30531 SNCB-201ENST00000310112 1383 ntAPPRIS P1 TSL 1 (best) BASIC20.58■□□□□ 0.88
SLC6A1P30531 AFDN-AS1-201ENST00000359760 2238 ntTSL 1 (best) BASIC20.57■□□□□ 0.88
SLC6A1P30531 REPIN1-204ENST00000466559 1022 ntTSL 1 (best) BASIC20.57■□□□□ 0.88
SLC6A1P30531 SLC35B2-204ENST00000537814 1715 ntTSL 2 BASIC20.57■□□□□ 0.88
SLC6A1P30531 UBE2S-203ENST00000589978 496 ntTSL 5 BASIC20.57■□□□□ 0.88
SLC6A1P30531 U2AF2-202ENST00000450554 3022 ntAPPRIS ALT1 TSL 1 (best) BASIC20.57■□□□□ 0.88
SLC6A1P30531 RINL-208ENST00000598904 1846 ntAPPRIS P3 TSL 5 BASIC20.57■□□□□ 0.88
SLC6A1P30531 PTGES2-202ENST00000338961 2331 ntAPPRIS P1 TSL 1 (best) BASIC20.56■□□□□ 0.88
SLC6A1P30531 CDR2-201ENST00000268383 2702 ntAPPRIS P1 TSL 1 (best) BASIC20.56■□□□□ 0.88
SLC6A1P30531 AMZ2-202ENST00000359904 2402 ntAPPRIS P1 TSL 2 BASIC20.56■□□□□ 0.88
SLC6A1P30531 FNDC11-204ENST00000615526 2954 ntAPPRIS P1 BASIC20.56■□□□□ 0.88
SLC6A1P30531 KCNS1-202ENST00000537075 2136 ntAPPRIS P1 TSL 1 (best) BASIC20.56■□□□□ 0.88
SLC6A1P30531 CHODL-201ENST00000299295 2548 ntAPPRIS P1 TSL 1 (best) BASIC20.56■□□□□ 0.88
SLC6A1P30531 CIB2-204ENST00000557846 934 ntTSL 3 BASIC20.56■□□□□ 0.88
SLC6A1P30531 C19orf68-201ENST00000328759 2277 ntAPPRIS ALT2 TSL 1 (best) BASIC20.56■□□□□ 0.88
SLC6A1P30531 RP9P-201ENST00000381639 1303 ntTSL 1 (best) BASIC20.55■□□□□ 0.88
SLC6A1P30531 AP003733.4-201ENST00000623785 1697 ntBASIC20.55■□□□□ 0.88
SLC6A1P30531 GSR-205ENST00000541648 1410 ntTSL 1 (best) BASIC20.55■□□□□ 0.88
SLC6A1P30531 ACTL10-201ENST00000330271 2028 ntAPPRIS P1 BASIC20.55■□□□□ 0.88
SLC6A1P30531 ARX-201ENST00000379044 2876 ntAPPRIS P1 TSL 1 (best) BASIC20.55■□□□□ 0.88
SLC6A1P30531 PITX2-209ENST00000557119 1889 ntTSL 2 BASIC20.55■□□□□ 0.88
SLC6A1P30531 SLC30A2-201ENST00000374276 2494 ntAPPRIS P1 TSL 1 (best) BASIC20.55■□□□□ 0.88
SLC6A1P30531 DENND1A-201ENST00000373618 3003 ntTSL 1 (best) BASIC20.55■□□□□ 0.88
SLC6A1P30531 ZCCHC2-201ENST00000269499 5959 ntAPPRIS P2 TSL 5 BASIC20.55■□□□□ 0.88
SLC6A1P30531 CTSF-201ENST00000310325 2035 ntAPPRIS P1 TSL 1 (best) BASIC20.54■□□□□ 0.88
SLC6A1P30531 AC113189.4-201ENST00000575331 5553 ntTSL 1 (best) BASIC20.54■□□□□ 0.88
SLC6A1P30531 HEXDC-202ENST00000337014 2285 ntTSL 1 (best) BASIC20.54■□□□□ 0.88
Retrieved 100 of 98,524 protein–RNA pairs in 18.9 ms