Protein–RNA interactions for Protein: O94913

PCF11, Pre-mRNA cleavage complex 2 protein Pcf11, humanhuman

Known RBP Predictions only

Length 1,555 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
PCF11O94913 NDEL1-219ENST00000585098 454 ntTSL 3 BASIC38.14■■■■□ 3.7
PCF11O94913 HES6-204ENST00000409182 863 ntTSL 2 BASIC38.13■■■■□ 3.69
PCF11O94913 AP004609.3-201ENST00000610705 1884 ntBASIC38.13■■■■□ 3.69
PCF11O94913 MED22-201ENST00000343730 1437 ntAPPRIS P4 TSL 1 (best) BASIC38.12■■■■□ 3.69
PCF11O94913 FP236240.1-201ENST00000619537 1116 ntAPPRIS P1 TSL 1 (best) BASIC38.11■■■■□ 3.69
PCF11O94913 EMID1-203ENST00000404820 2118 ntTSL 5 BASIC38.11■■■■□ 3.69
PCF11O94913 BOD1-202ENST00000311086 1562 ntAPPRIS P1 TSL 1 (best) BASIC38.11■■■■□ 3.69
PCF11O94913 OR2A1-AS1-204ENST00000470435 602 ntBASIC38.1■■■■□ 3.69
PCF11O94913 SMUG1-203ENST00000401977 1082 ntAPPRIS P1 TSL 5 BASIC38.1■■■■□ 3.69
PCF11O94913 CTF1-202ENST00000395019 1617 ntAPPRIS ALT1 TSL 1 (best) BASIC38.09■■■■□ 3.69
PCF11O94913 EFEMP2-201ENST00000307998 2034 ntAPPRIS P1 TSL 1 (best) BASIC38.09■■■■□ 3.69
PCF11O94913 PEMT-202ENST00000395781 1050 ntTSL 2 BASIC38.09■■■■□ 3.69
PCF11O94913 SHF-208ENST00000560734 1731 ntTSL 3 BASIC38.08■■■■□ 3.69
PCF11O94913 CHKB-AS1-201ENST00000380711 578 ntTSL 2 BASIC38.08■■■■□ 3.69
PCF11O94913 CARMIL1-202ENST00000461945 1290 ntTSL 1 (best) BASIC38.08■■■■□ 3.69
PCF11O94913 ZEB1-AS1-205ENST00000605946 382 ntTSL 5 BASIC38.08■■■■□ 3.69
PCF11O94913 LTB4R-202ENST00000396782 1627 ntAPPRIS P1 TSL 1 (best) BASIC38.08■■■■□ 3.69
PCF11O94913 FKBP1A-211ENST00000618612 1518 ntTSL 1 (best) BASIC38.08■■■■□ 3.69
PCF11O94913 ANKRD9-204ENST00000559651 1444 ntAPPRIS P1 TSL 1 (best) BASIC38.08■■■■□ 3.69
PCF11O94913 LAT-217ENST00000630764 610 ntAPPRIS ALT2 TSL 5 BASIC38.07■■■■□ 3.69
PCF11O94913 C15orf59-201ENST00000379822 1342 ntAPPRIS P1 TSL 1 (best) BASIC38.07■■■■□ 3.68
PCF11O94913 TMEM9-201ENST00000367330 1959 ntAPPRIS P3 TSL 1 (best) BASIC38.07■■■■□ 3.68
PCF11O94913 U2AF1-202ENST00000380276 940 ntAPPRIS ALT2 TSL 1 (best) BASIC38.06■■■■□ 3.68
PCF11O94913 EXOC3L4-201ENST00000380069 2293 ntAPPRIS P1 TSL 1 (best) BASIC38.06■■■■□ 3.68
PCF11O94913 CTSA-203ENST00000372459 1972 ntTSL 1 (best) BASIC38.06■■■■□ 3.68
PCF11O94913 C9orf47-202ENST00000375850 859 ntAPPRIS ALT2 TSL 3 BASIC38.06■■■■□ 3.68
PCF11O94913 ITGA9-203ENST00000422441 2282 ntTSL 1 (best) BASIC38.05■■■■□ 3.68
PCF11O94913 U2AF1-204ENST00000459639 1675 ntTSL 1 (best) BASIC38.05■■■■□ 3.68
PCF11O94913 U2AF1L5-204ENST00000623375 1675 ntTSL 1 (best) BASIC38.05■■■■□ 3.68
PCF11O94913 BMP7-204ENST00000450594 1857 ntTSL 2 BASIC38.05■■■■□ 3.68
PCF11O94913 ZNF653-201ENST00000293771 2240 ntAPPRIS P1 TSL 1 (best) BASIC38.05■■■■□ 3.68
PCF11O94913 TRAF7-203ENST00000565383 799 ntTSL 5 BASIC38.05■■■■□ 3.68
PCF11O94913 NRG2-203ENST00000340391 1944 ntTSL 5 BASIC38.04■■■■□ 3.68
PCF11O94913 MMP25-AS1-209ENST00000576250 779 ntTSL 5 BASIC38.03■■■■□ 3.68
PCF11O94913 PPP4C-214ENST00000627746 1301 ntTSL 5 BASIC38.03■■■■□ 3.68
PCF11O94913 JMJD8-201ENST00000412368 2038 ntAPPRIS P2 TSL 1 (best) BASIC38.03■■■■□ 3.68
PCF11O94913 RHEB-201ENST00000262187 2075 ntAPPRIS P1 TSL 1 (best) BASIC38.03■■■■□ 3.68
PCF11O94913 CRACR2B-201ENST00000450448 1663 ntTSL 1 (best) BASIC38.03■■■■□ 3.68
PCF11O94913 OSCAR-206ENST00000391760 629 ntTSL 2 BASIC38.02■■■■□ 3.68
PCF11O94913 FAM136A-202ENST00000430566 885 ntTSL 3 BASIC38.02■■■■□ 3.68
PCF11O94913 SHF-206ENST00000560471 2499 ntTSL 5 BASIC38.02■■■■□ 3.68
PCF11O94913 TTC3-225ENST00000540756 2025 ntTSL 2 BASIC38.02■■■■□ 3.68
PCF11O94913 RTN2-202ENST00000344680 2063 ntAPPRIS P1 TSL 1 (best) BASIC38.02■■■■□ 3.68
PCF11O94913 TK2-216ENST00000564917 1156 ntTSL 3 BASIC38.02■■■■□ 3.68
PCF11O94913 NBPF26-209ENST00000624419 1133 ntTSL 5 BASIC38.02■■■■□ 3.68
PCF11O94913 PQLC1-203ENST00000397778 2555 ntAPPRIS P3 TSL 1 (best) BASIC38.01■■■■□ 3.68
PCF11O94913 TOMM40-203ENST00000426677 1725 ntAPPRIS P2 TSL 1 (best) BASIC38.01■■■■□ 3.68
PCF11O94913 ZNF263-204ENST00000573578 1636 ntTSL 5 BASIC38.01■■■■□ 3.68
PCF11O94913 UBALD2-201ENST00000327490 1593 ntAPPRIS P1 TSL 1 (best) BASIC38■■■■□ 3.67
PCF11O94913 PRMT5-228ENST00000627278 129 ntTSL 5 BASIC38■■■■□ 3.67
PCF11O94913 EME2-205ENST00000568449 1234 ntAPPRIS P1 TSL 1 (best) BASIC37.99■■■■□ 3.67
PCF11O94913 LSM7-203ENST00000585409 512 ntTSL 2 BASIC37.99■■■■□ 3.67
PCF11O94913 PPM1J-201ENST00000309276 1863 ntAPPRIS P1 TSL 1 (best) BASIC37.99■■■■□ 3.67
PCF11O94913 ZFAND5-202ENST00000343431 1073 ntAPPRIS P1 TSL 5 BASIC37.98■■■■□ 3.67
PCF11O94913 LRP11-202ENST00000367368 1042 ntTSL 2 BASIC37.98■■■■□ 3.67
PCF11O94913 FAM162B-201ENST00000368557 1036 ntAPPRIS P1 TSL 1 (best) BASIC37.98■■■■□ 3.67
PCF11O94913 CTU1-201ENST00000421832 2087 ntAPPRIS P1 TSL 2 BASIC37.98■■■■□ 3.67
PCF11O94913 RHOF-203ENST00000537171 1485 ntTSL 1 (best) BASIC37.98■■■■□ 3.67
PCF11O94913 CARNMT1-201ENST00000376830 1012 ntTSL 1 (best) BASIC37.97■■■■□ 3.67
PCF11O94913 ZNF302-211ENST00000509528 577 ntTSL 4 BASIC37.97■■■■□ 3.67
PCF11O94913 UNCX-201ENST00000316333 2048 ntAPPRIS P1 TSL 1 (best) BASIC37.97■■■■□ 3.67
PCF11O94913 EPM2A-208ENST00000618445 1694 ntTSL 1 (best) BASIC37.97■■■■□ 3.67
PCF11O94913 DGAT1-201ENST00000332324 1473 ntTSL 5 BASIC37.97■■■■□ 3.67
PCF11O94913 CACNG6-203ENST00000352529 1635 ntTSL 5 BASIC37.96■■■■□ 3.67
PCF11O94913 NRM-201ENST00000259953 1755 ntAPPRIS P2 TSL 2 BASIC37.96■■■■□ 3.67
PCF11O94913 RNF146-205ENST00000477776 762 ntTSL 3 BASIC37.96■■■■□ 3.67
PCF11O94913 MAF-201ENST00000326043 2646 ntAPPRIS P3 TSL 1 (best) BASIC37.96■■■■□ 3.67
PCF11O94913 RINL-208ENST00000598904 1846 ntAPPRIS P3 TSL 5 BASIC37.95■■■■□ 3.67
PCF11O94913 VAX1-202ENST00000369206 1723 ntAPPRIS P1 TSL 5 BASIC37.95■■■■□ 3.67
PCF11O94913 RABL6-204ENST00000371671 1580 ntAPPRIS ALT2 TSL 1 (best) BASIC37.95■■■■□ 3.67
PCF11O94913 C11orf91-201ENST00000379011 811 ntAPPRIS P1 TSL 1 (best) BASIC37.93■■■■□ 3.66
PCF11O94913 CLEC2L-201ENST00000422142 1359 ntAPPRIS P2 TSL 3 BASIC37.93■■■■□ 3.66
PCF11O94913 SH2B1-205ENST00000538342 1532 ntTSL 2 BASIC37.93■■■■□ 3.66
PCF11O94913 CDCA5-202ENST00000404147 1012 ntTSL 2 BASIC37.93■■■■□ 3.66
PCF11O94913 AC079305.3-201ENST00000455416 218 ntTSL 5 BASIC37.93■■■■□ 3.66
PCF11O94913 PNCK-204ENST00000370150 1612 ntAPPRIS P1 TSL 5 BASIC37.93■■■■□ 3.66
PCF11O94913 SLC25A1-202ENST00000451283 1514 ntTSL 2 BASIC37.92■■■■□ 3.66
PCF11O94913 CTF1-201ENST00000279804 1664 ntAPPRIS P3 TSL 1 (best) BASIC37.92■■■■□ 3.66
PCF11O94913 TMEM54-201ENST00000329151 871 ntTSL 1 (best) BASIC37.92■■■■□ 3.66
PCF11O94913 PPP1R3F-205ENST00000495799 1537 ntTSL 1 (best) BASIC37.92■■■■□ 3.66
PCF11O94913 AC078883.1-201ENST00000442417 950 ntTSL 3 BASIC37.9■■■■□ 3.66
PCF11O94913 AL356441.2-201ENST00000443009 864 ntBASIC37.9■■■■□ 3.66
PCF11O94913 R3HCC1-201ENST00000265806 1773 ntAPPRIS ALT2 TSL 1 (best) BASIC37.9■■■■□ 3.66
PCF11O94913 GATA4-207ENST00000532059 1459 ntAPPRIS ALT1 TSL 1 (best) BASIC37.88■■■■□ 3.66
PCF11O94913 C11orf80-210ENST00000527634 1666 ntAPPRIS ALT2 TSL 5 BASIC37.88■■■■□ 3.65
PCF11O94913 EVA1C-203ENST00000401402 1558 ntTSL 5 BASIC37.88■■■■□ 3.65
PCF11O94913 UBALD1-206ENST00000590965 1462 ntTSL 2 BASIC37.88■■■■□ 3.65
PCF11O94913 PKIB-205ENST00000368452 1398 ntAPPRIS P1 TSL 1 (best) BASIC37.88■■■■□ 3.65
PCF11O94913 AC073934.1-201ENST00000490314 495 ntTSL 4 BASIC37.88■■■■□ 3.65
PCF11O94913 HAUS7-211ENST00000626181 414 ntAPPRIS ALT2 TSL 5 BASIC37.88■■■■□ 3.65
PCF11O94913 ATPAF1-213ENST00000574428 1760 ntTSL 1 (best) BASIC37.87■■■■□ 3.65
PCF11O94913 FZD2-201ENST00000315323 2112 ntAPPRIS P1 BASIC37.87■■■■□ 3.65
PCF11O94913 CAMK2N2-201ENST00000296238 1362 ntAPPRIS P1 TSL 1 (best) BASIC37.87■■■■□ 3.65
PCF11O94913 CDK2AP1-201ENST00000261692 1625 ntAPPRIS P1 TSL 1 (best) BASIC37.87■■■■□ 3.65
PCF11O94913 AL022341.2-201ENST00000573609 1417 ntTSL 3 BASIC37.86■■■■□ 3.65
PCF11O94913 PWWP2B-201ENST00000305233 2651 ntAPPRIS P1 TSL 1 (best) BASIC37.86■■■■□ 3.65
PCF11O94913 DHFR-203ENST00000505337 1719 ntAPPRIS P1 TSL 2 BASIC37.86■■■■□ 3.65
PCF11O94913 CASP9-202ENST00000348549 1621 ntTSL 1 (best) BASIC37.86■■■■□ 3.65
PCF11O94913 NAXE-202ENST00000368234 901 ntTSL 1 (best) BASIC37.85■■■■□ 3.65
PCF11O94913 KRT18P10-201ENST00000388836 1287 ntBASIC37.85■■■■□ 3.65
Retrieved 100 of 98,524 protein–RNA pairs in 47.1 ms