Protein–RNA interactions for Protein: O00257

CBX4, E3 SUMO-protein ligase CBX4, humanhuman

Predictions only

Length 560 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CBX4O00257 C2CD4D-201ENST00000454109 1757 ntAPPRIS P1 TSL 2 BASIC24.62■■□□□ 1.53
CBX4O00257 TOP1MT-208ENST00000519148 1868 ntTSL 2 BASIC24.62■■□□□ 1.53
CBX4O00257 SH2B1-205ENST00000538342 1532 ntTSL 2 BASIC24.62■■□□□ 1.53
CBX4O00257 COPRS-201ENST00000302362 968 ntAPPRIS P1 TSL 1 (best) BASIC24.62■■□□□ 1.53
CBX4O00257 C17orf49-201ENST00000439424 850 ntAPPRIS P3 TSL 1 (best) BASIC24.62■■□□□ 1.53
CBX4O00257 RCCD1-206ENST00000556618 1556 ntAPPRIS P2 TSL 5 BASIC24.62■■□□□ 1.53
CBX4O00257 CPSF4-207ENST00000451876 1644 ntTSL 5 BASIC24.61■■□□□ 1.53
CBX4O00257 AC148477.1-201ENST00000537720 476 ntTSL 3 BASIC24.61■■□□□ 1.53
CBX4O00257 TBX2-AS1-203ENST00000590421 861 ntTSL 2 BASIC24.61■■□□□ 1.53
CBX4O00257 EVA1C-203ENST00000401402 1558 ntTSL 5 BASIC24.61■■□□□ 1.53
CBX4O00257 TAZ-213ENST00000601016 1889 ntTSL 1 (best) BASIC24.61■■□□□ 1.53
CBX4O00257 FEZ2-204ENST00000405912 1931 ntTSL 1 (best) BASIC24.61■■□□□ 1.53
CBX4O00257 RAPGEF1-203ENST00000372195 6256 ntTSL 1 (best) BASIC24.6■■□□□ 1.53
CBX4O00257 OSCAR-202ENST00000351806 1375 ntAPPRIS ALT2 TSL 1 (best) BASIC24.6■■□□□ 1.53
CBX4O00257 ZNF821-201ENST00000313565 1874 ntTSL 1 (best) BASIC24.6■■□□□ 1.53
CBX4O00257 PLPPR3-201ENST00000359894 2387 ntAPPRIS P3 TSL 1 (best) BASIC24.59■■□□□ 1.53
CBX4O00257 PYY2-202ENST00000441253 1076 ntTSL 1 (best) BASIC24.59■■□□□ 1.53
CBX4O00257 ERFE-207ENST00000546354 1065 ntAPPRIS P2 TSL 1 (best) BASIC24.59■■□□□ 1.53
CBX4O00257 SERF1A-202ENST00000354833 1889 ntTSL 1 (best) BASIC24.59■■□□□ 1.53
CBX4O00257 SERF1B-201ENST00000380750 1889 ntTSL 1 (best) BASIC24.59■■□□□ 1.53
CBX4O00257 EVA1C-201ENST00000300255 1998 ntAPPRIS P3 TSL 1 (best) BASIC24.58■■□□□ 1.52
CBX4O00257 C15orf59-201ENST00000379822 1342 ntAPPRIS P1 TSL 1 (best) BASIC24.58■■□□□ 1.52
CBX4O00257 NAT14-201ENST00000205194 1536 ntAPPRIS P1 TSL 1 (best) BASIC24.57■■□□□ 1.52
CBX4O00257 FSD1-201ENST00000221856 1831 ntAPPRIS P1 TSL 1 (best) BASIC24.57■■□□□ 1.52
CBX4O00257 IDNK-203ENST00000405990 629 ntTSL 2 BASIC24.57■■□□□ 1.52
CBX4O00257 KMT2E-AS1-201ENST00000453677 736 ntTSL 3 BASIC24.57■■□□□ 1.52
CBX4O00257 ILDR2-208ENST00000529387 1238 ntTSL 5 BASIC24.57■■□□□ 1.52
CBX4O00257 ATXN3-252ENST00000620536 1044 ntTSL 5 BASIC24.57■■□□□ 1.52
CBX4O00257 ATXN3-253ENST00000621269 936 ntTSL 5 BASIC24.57■■□□□ 1.52
CBX4O00257 TCEA1-213ENST00000640041 1171 ntTSL 5 BASIC24.57■■□□□ 1.52
CBX4O00257 PEA15-201ENST00000360472 2471 ntAPPRIS P1 TSL 1 (best) BASIC24.57■■□□□ 1.52
CBX4O00257 ATP6V0A2-209ENST00000613625 1620 ntTSL 1 (best) BASIC24.57■■□□□ 1.52
CBX4O00257 CACNG7-203ENST00000391767 2688 ntAPPRIS P1 TSL 5 BASIC24.57■■□□□ 1.52
CBX4O00257 C11orf80-204ENST00000525908 2135 ntAPPRIS P3 TSL 2 BASIC24.56■■□□□ 1.52
CBX4O00257 EPM2A-208ENST00000618445 1694 ntTSL 1 (best) BASIC24.56■■□□□ 1.52
CBX4O00257 PARL-202ENST00000317096 1414 ntAPPRIS P1 TSL 1 (best) BASIC24.56■■□□□ 1.52
CBX4O00257 SRP68-202ENST00000539137 2386 ntTSL 2 BASIC24.56■■□□□ 1.52
CBX4O00257 AC016910.1-201ENST00000422799 1046 ntTSL 1 (best) BASIC24.56■■□□□ 1.52
CBX4O00257 BHLHE23-202ENST00000612929 1109 ntBASIC24.56■■□□□ 1.52
CBX4O00257 RPUSD1-207ENST00000565809 1918 ntTSL 2 BASIC24.55■■□□□ 1.52
CBX4O00257 LYPLA1-215ENST00000618914 2482 ntTSL 5 BASIC24.55■■□□□ 1.52
CBX4O00257 CHKA-202ENST00000356135 1755 ntAPPRIS ALT2 TSL 1 (best) BASIC24.55■■□□□ 1.52
CBX4O00257 ANKRD9-204ENST00000559651 1444 ntAPPRIS P1 TSL 1 (best) BASIC24.55■■□□□ 1.52
CBX4O00257 AC139795.1-202ENST00000500444 432 ntBASIC24.55■■□□□ 1.52
CBX4O00257 DGAT1-201ENST00000332324 1473 ntTSL 5 BASIC24.55■■□□□ 1.52
CBX4O00257 ATPAF1-213ENST00000574428 1760 ntTSL 1 (best) BASIC24.54■■□□□ 1.52
CBX4O00257 ERN1-208ENST00000606895 2068 ntBASIC24.54■■□□□ 1.52
CBX4O00257 SMKR1-201ENST00000462322 1035 ntAPPRIS P1 TSL 1 (best) BASIC24.54■■□□□ 1.52
CBX4O00257 HYI-210ENST00000486909 905 ntTSL 5 BASIC24.54■■□□□ 1.52
CBX4O00257 RBFA-201ENST00000262197 1219 ntTSL 1 (best) BASIC24.53■■□□□ 1.52
CBX4O00257 PROSER2-202ENST00000379200 1232 ntAPPRIS ALT2 BASIC24.53■■□□□ 1.52
CBX4O00257 TMEM191C-206ENST00000432134 1129 ntAPPRIS ALT2 TSL 5 BASIC24.53■■□□□ 1.52
CBX4O00257 AC139795.1-203ENST00000515045 853 ntTSL 2 BASIC24.53■■□□□ 1.52
CBX4O00257 NKX2-5-204ENST00000521848 1027 ntTSL 2 BASIC24.53■■□□□ 1.52
CBX4O00257 SEC11C-204ENST00000587834 1202 ntAPPRIS P1 TSL 1 (best) BASIC24.53■■□□□ 1.52
CBX4O00257 UBALD2-201ENST00000327490 1593 ntAPPRIS P1 TSL 1 (best) BASIC24.53■■□□□ 1.52
CBX4O00257 LTB4R-202ENST00000396782 1627 ntAPPRIS P1 TSL 1 (best) BASIC24.53■■□□□ 1.52
CBX4O00257 AC092803.2-201ENST00000564287 1899 ntBASIC24.52■■□□□ 1.52
CBX4O00257 AC011511.4-201ENST00000586529 1850 ntAPPRIS P1 TSL 5 BASIC24.52■■□□□ 1.52
CBX4O00257 CCDC71L-201ENST00000315965 1575 ntAPPRIS ALT2 TSL 5 BASIC24.52■■□□□ 1.52
CBX4O00257 PEX26-202ENST00000399744 1672 ntAPPRIS P1 TSL 1 (best) BASIC24.52■■□□□ 1.52
CBX4O00257 KLC1-225ENST00000557575 2188 ntTSL 5 BASIC24.52■■□□□ 1.52
CBX4O00257 AL354928.1-201ENST00000438380 617 ntTSL 2 BASIC24.51■■□□□ 1.51
CBX4O00257 AC064853.2-201ENST00000641246 144 ntAPPRIS P1 BASIC24.51■■□□□ 1.51
CBX4O00257 BAMBI-201ENST00000375533 1877 ntAPPRIS P1 TSL 1 (best) BASIC24.51■■□□□ 1.51
CBX4O00257 LINC00588-201ENST00000521663 1875 ntTSL 2 BASIC24.51■■□□□ 1.51
CBX4O00257 ABL2-203ENST00000392043 2140 ntTSL 1 (best) BASIC24.5■■□□□ 1.51
CBX4O00257 CDK2AP1-201ENST00000261692 1625 ntAPPRIS P1 TSL 1 (best) BASIC24.5■■□□□ 1.51
CBX4O00257 AJAP1-201ENST00000378190 2383 ntAPPRIS P1 TSL 5 BASIC24.5■■□□□ 1.51
CBX4O00257 MSANTD2-201ENST00000239614 2495 ntTSL 2 BASIC24.5■■□□□ 1.51
CBX4O00257 LMAN2-208ENST00000515209 1149 ntAPPRIS ALT2 TSL 3 BASIC24.5■■□□□ 1.51
CBX4O00257 AC116025.2-201ENST00000576632 443 ntTSL 3 BASIC24.5■■□□□ 1.51
CBX4O00257 BICDL2-203ENST00000572449 1984 ntAPPRIS P1 TSL 5 BASIC24.5■■□□□ 1.51
CBX4O00257 C1QTNF1-206ENST00000579760 1672 ntAPPRIS P1 TSL 1 (best) BASIC24.5■■□□□ 1.51
CBX4O00257 ZNF692-201ENST00000306601 1931 ntAPPRIS P3 TSL 1 (best) BASIC24.49■■□□□ 1.51
CBX4O00257 BIN1-211ENST00000409400 2143 ntTSL 1 (best) BASIC24.49■■□□□ 1.51
CBX4O00257 PFDN2-201ENST00000368010 677 ntAPPRIS P1 TSL 1 (best) BASIC24.49■■□□□ 1.51
CBX4O00257 KRT18P10-201ENST00000388836 1287 ntBASIC24.49■■□□□ 1.51
CBX4O00257 RPS2P7-201ENST00000447334 885 ntBASIC24.49■■□□□ 1.51
CBX4O00257 LYSMD2-202ENST00000454181 1228 ntTSL 1 (best) BASIC24.49■■□□□ 1.51
CBX4O00257 MMP28-203ENST00000612672 1092 ntTSL 1 (best) BASIC24.49■■□□□ 1.51
CBX4O00257 CHSY1-201ENST00000254190 4550 ntAPPRIS P1 TSL 1 (best) BASIC24.49■■□□□ 1.51
CBX4O00257 BSCL2-205ENST00000403550 1693 ntAPPRIS P3 TSL 5 BASIC24.49■■□□□ 1.51
CBX4O00257 PHF23-212ENST00000576955 1944 ntTSL 2 BASIC24.49■■□□□ 1.51
CBX4O00257 FAM98C-202ENST00000343358 1006 ntTSL 1 (best) BASIC24.48■■□□□ 1.51
CBX4O00257 TMEM203-201ENST00000343666 1557 ntAPPRIS P1 BASIC24.48■■□□□ 1.51
CBX4O00257 PRKAR1B-203ENST00000403562 1917 ntAPPRIS P1 TSL 1 (best) BASIC24.48■■□□□ 1.51
CBX4O00257 WIPI2-204ENST00000404704 1663 ntTSL 5 BASIC24.48■■□□□ 1.51
CBX4O00257 HERC2P9-201ENST00000507787 1023 ntTSL 1 (best) BASIC24.48■■□□□ 1.51
CBX4O00257 DRAM2-211ENST00000539140 1883 ntAPPRIS P1 TSL 1 (best) BASIC24.47■■□□□ 1.51
CBX4O00257 P2RX4-203ENST00000359949 1836 ntTSL 5 BASIC24.47■■□□□ 1.51
CBX4O00257 TMEM125-202ENST00000439858 1786 ntAPPRIS P1 TSL 2 BASIC24.47■■□□□ 1.51
CBX4O00257 PAIP1-208ENST00000514514 1603 ntTSL 5 BASIC24.47■■□□□ 1.51
CBX4O00257 KRTAP5-5-201ENST00000399676 933 ntAPPRIS P1 BASIC24.47■■□□□ 1.51
CBX4O00257 PLA2G10-201ENST00000438167 1000 ntAPPRIS P1 TSL 1 (best) BASIC24.47■■□□□ 1.51
CBX4O00257 AC087393.1-201ENST00000582896 145 ntBASIC24.47■■□□□ 1.51
CBX4O00257 AC010980.1-201ENST00000587192 1142 ntBASIC24.47■■□□□ 1.51
CBX4O00257 CASTOR2-201ENST00000616305 1257 ntAPPRIS P1 TSL 1 (best) BASIC24.47■■□□□ 1.51
CBX4O00257 USP2-204ENST00000525735 1704 ntAPPRIS ALT1 TSL 1 (best) BASIC24.47■■□□□ 1.51
CBX4O00257 OTUD5-208ENST00000610466 2487 ntTSL 5 BASIC24.46■■□□□ 1.51
Retrieved 100 of 98,524 protein–RNA pairs in 22.8 ms