Protein–RNA interactions for Protein: Q9P1Q0

VPS54, Vacuolar protein sorting-associated protein 54, humanhuman

Predictions only

Length 977 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
VPS54Q9P1Q0 NCOA5-201ENST00000290231 3220 ntAPPRIS P1 TSL 1 (best) BASIC19.52■□□□□ 0.72
VPS54Q9P1Q0 SCAI-202ENST00000373549 1968 ntTSL 1 (best) BASIC19.52■□□□□ 0.72
VPS54Q9P1Q0 RDH13-202ENST00000396247 1987 ntTSL 1 (best) BASIC19.52■□□□□ 0.72
VPS54Q9P1Q0 WDR90-215ENST00000549091 5589 ntAPPRIS ALT2 TSL 5 BASIC19.52■□□□□ 0.72
VPS54Q9P1Q0 PDE9A-205ENST00000349112 1616 ntTSL 1 (best) BASIC19.52■□□□□ 0.72
VPS54Q9P1Q0 SEPT8-208ENST00000378721 1723 ntTSL 5 BASIC19.52■□□□□ 0.72
VPS54Q9P1Q0 SIL1-213ENST00000509534 1714 ntTSL 5 BASIC19.52■□□□□ 0.72
VPS54Q9P1Q0 RUNX1-203ENST00000358356 2720 ntTSL 1 (best) BASIC19.52■□□□□ 0.72
VPS54Q9P1Q0 SNHG17-206ENST00000436764 973 ntTSL 5 BASIC19.52■□□□□ 0.72
VPS54Q9P1Q0 DYNC1LI2-202ENST00000440564 1145 ntTSL 2 BASIC19.52■□□□□ 0.72
VPS54Q9P1Q0 SUMO2P17-202ENST00000508743 738 ntTSL 3 BASIC19.52■□□□□ 0.72
VPS54Q9P1Q0 C12orf76-202ENST00000546627 461 ntTSL 4 BASIC19.52■□□□□ 0.72
VPS54Q9P1Q0 AC145285.3-201ENST00000564603 959 ntBASIC19.52■□□□□ 0.72
VPS54Q9P1Q0 AC010654.1-201ENST00000615722 808 ntBASIC19.52■□□□□ 0.72
VPS54Q9P1Q0 PHF20L1-220ENST00000622263 3375 ntAPPRIS P1 TSL 5 BASIC19.52■□□□□ 0.72
VPS54Q9P1Q0 ADAMTS7-201ENST00000388820 5490 ntAPPRIS P1 TSL 1 (best) BASIC19.52■□□□□ 0.72
VPS54Q9P1Q0 POLR3E-202ENST00000359210 2469 ntTSL 1 (best) BASIC19.52■□□□□ 0.72
VPS54Q9P1Q0 HMGN1-204ENST00000380749 1383 ntAPPRIS P1 TSL 1 (best) BASIC19.52■□□□□ 0.72
VPS54Q9P1Q0 TOP3BP1-201ENST00000420768 1380 ntBASIC19.52■□□□□ 0.72
VPS54Q9P1Q0 AC093627.6-201ENST00000478759 1365 ntTSL 5 BASIC19.52■□□□□ 0.72
VPS54Q9P1Q0 AUNIP-201ENST00000374298 2116 ntAPPRIS P1 TSL 1 (best) BASIC19.52■□□□□ 0.72
VPS54Q9P1Q0 IFT74-203ENST00000433700 2119 ntAPPRIS P1 TSL 5 BASIC19.52■□□□□ 0.72
VPS54Q9P1Q0 RGS3-210ENST00000462143 2759 ntTSL 2 BASIC19.52■□□□□ 0.72
VPS54Q9P1Q0 JKAMP-215ENST00000616435 2338 ntTSL 5 BASIC19.52■□□□□ 0.71
VPS54Q9P1Q0 HARS-204ENST00000438307 1789 ntTSL 2 BASIC19.52■□□□□ 0.71
VPS54Q9P1Q0 CNTNAP3-205ENST00000377659 2649 ntTSL 2 BASIC19.52■□□□□ 0.71
VPS54Q9P1Q0 AL079303.2-201ENST00000555107 2613 ntTSL 3 BASIC19.52■□□□□ 0.71
VPS54Q9P1Q0 TLE2-201ENST00000262953 2705 ntAPPRIS P3 TSL 1 (best) BASIC19.52■□□□□ 0.71
VPS54Q9P1Q0 PRODH-202ENST00000334029 1985 ntAPPRIS ALT2 TSL 1 (best) BASIC19.52■□□□□ 0.71
VPS54Q9P1Q0 ENC1-205ENST00000510316 5381 ntTSL 2 BASIC19.52■□□□□ 0.71
VPS54Q9P1Q0 RGN-203ENST00000397180 2257 ntAPPRIS P1 TSL 5 BASIC19.51■□□□□ 0.71
VPS54Q9P1Q0 CCDC94-201ENST00000262962 1434 ntAPPRIS P1 TSL 1 (best) BASIC19.51■□□□□ 0.71
VPS54Q9P1Q0 CORO6-202ENST00000388767 2397 ntAPPRIS P2 TSL 2 BASIC19.51■□□□□ 0.71
VPS54Q9P1Q0 CHST8-201ENST00000262622 2479 ntAPPRIS P1 TSL 1 (best) BASIC19.51■□□□□ 0.71
VPS54Q9P1Q0 RUSC1-209ENST00000471876 1749 ntTSL 1 (best) BASIC19.51■□□□□ 0.71
VPS54Q9P1Q0 BCRP2-201ENST00000398241 1842 ntTSL 2 BASIC19.51■□□□□ 0.71
VPS54Q9P1Q0 N4BP2L1-210ENST00000613078 2032 ntTSL 5 BASIC19.51■□□□□ 0.71
VPS54Q9P1Q0 ACSM2A-213ENST00000575690 2322 ntAPPRIS P1 TSL 2 BASIC19.51■□□□□ 0.71
VPS54Q9P1Q0 RARA-206ENST00000425707 3041 ntTSL 1 (best) BASIC19.51■□□□□ 0.71
VPS54Q9P1Q0 CELA2A-201ENST00000359621 919 ntAPPRIS P1 TSL 1 (best) BASIC19.51■□□□□ 0.71
VPS54Q9P1Q0 MIR503HG-203ENST00000441492 649 ntTSL 1 (best) BASIC19.51■□□□□ 0.71
VPS54Q9P1Q0 AC034213.1-201ENST00000507681 806 ntTSL 3 BASIC19.51■□□□□ 0.71
VPS54Q9P1Q0 FBF1-204ENST00000586631 621 ntAPPRIS ALT2 TSL 2 BASIC19.51■□□□□ 0.71
VPS54Q9P1Q0 NME4-212ENST00000621774 904 ntTSL 3 BASIC19.51■□□□□ 0.71
VPS54Q9P1Q0 NFIC-210ENST00000590282 1558 ntTSL 2 BASIC19.51■□□□□ 0.71
VPS54Q9P1Q0 ELP5-202ENST00000356683 2197 ntTSL 5 BASIC19.51■□□□□ 0.71
VPS54Q9P1Q0 MTA2-204ENST00000527204 2265 ntTSL 2 BASIC19.51■□□□□ 0.71
VPS54Q9P1Q0 TMED3-203ENST00000536821 2265 ntTSL 2 BASIC19.51■□□□□ 0.71
VPS54Q9P1Q0 DARS-201ENST00000264161 2361 ntAPPRIS P1 TSL 1 (best) BASIC19.51■□□□□ 0.71
VPS54Q9P1Q0 LRP8-207ENST00000465675 2670 ntTSL 2 BASIC19.51■□□□□ 0.71
VPS54Q9P1Q0 AC092171.3-201ENST00000610122 2651 ntBASIC19.51■□□□□ 0.71
VPS54Q9P1Q0 ADAMTSL5-201ENST00000330475 2857 ntAPPRIS P1 TSL 2 BASIC19.51■□□□□ 0.71
VPS54Q9P1Q0 TPBG-203ENST00000543496 2881 ntAPPRIS P1 TSL 2 BASIC19.51■□□□□ 0.71
VPS54Q9P1Q0 AL365277.1-202ENST00000331856 2241 ntTSL 2 BASIC19.51■□□□□ 0.71
VPS54Q9P1Q0 SLFNL1-205ENST00000439569 2117 ntAPPRIS P3 TSL 2 BASIC19.51■□□□□ 0.71
VPS54Q9P1Q0 MIER1-206ENST00000371016 1802 ntTSL 1 (best) BASIC19.51■□□□□ 0.71
VPS54Q9P1Q0 QRFPR-202ENST00000394427 1708 ntAPPRIS P1 TSL 1 (best) BASIC19.51■□□□□ 0.71
VPS54Q9P1Q0 BCR-201ENST00000305877 7082 ntAPPRIS P1 TSL 1 (best) BASIC19.5■□□□□ 0.71
VPS54Q9P1Q0 AC010478.1-202ENST00000559112 2367 ntTSL 2 BASIC19.5■□□□□ 0.71
VPS54Q9P1Q0 CD1D-201ENST00000368171 2253 ntAPPRIS P1 TSL 1 (best) BASIC19.5■□□□□ 0.71
VPS54Q9P1Q0 HOXB6-203ENST00000484302 1960 ntAPPRIS P1 TSL 2 BASIC19.5■□□□□ 0.71
VPS54Q9P1Q0 LFNG-207ENST00000614382 1969 ntTSL 5 BASIC19.5■□□□□ 0.71
VPS54Q9P1Q0 CR392000.2-201ENST00000640235 1994 ntTSL 2 BASIC19.5■□□□□ 0.71
VPS54Q9P1Q0 GYG1-201ENST00000296048 1890 ntAPPRIS P1 TSL 1 (best) BASIC19.5■□□□□ 0.71
VPS54Q9P1Q0 NPR3-203ENST00000415167 1753 ntAPPRIS P3 TSL 1 (best) BASIC19.5■□□□□ 0.71
VPS54Q9P1Q0 NFIX-209ENST00000587760 1487 ntTSL 1 (best) BASIC19.5■□□□□ 0.71
VPS54Q9P1Q0 PKN3-201ENST00000291906 3375 ntAPPRIS P1 TSL 1 (best) BASIC19.5■□□□□ 0.71
VPS54Q9P1Q0 MFSD13A-202ENST00000369931 823 ntTSL 1 (best) BASIC19.5■□□□□ 0.71
VPS54Q9P1Q0 TMEM128-202ENST00000382753 1221 ntAPPRIS P1 TSL 1 (best) BASIC19.5■□□□□ 0.71
VPS54Q9P1Q0 PDE6D-202ENST00000409772 672 ntTSL 3 BASIC19.5■□□□□ 0.71
VPS54Q9P1Q0 STEAP3-204ENST00000409811 2103 ntTSL 1 (best) BASIC19.5■□□□□ 0.71
VPS54Q9P1Q0 IGLL3P-201ENST00000412472 434 ntBASIC19.5■□□□□ 0.71
VPS54Q9P1Q0 BX276092.7-202ENST00000422194 696 ntTSL 3 BASIC19.5■□□□□ 0.71
VPS54Q9P1Q0 PITPNA-AS1-201ENST00000425081 542 ntTSL 2 BASIC19.5■□□□□ 0.71
VPS54Q9P1Q0 C1orf226-202ENST00000426197 1049 ntAPPRIS P3 TSL 2 BASIC19.5■□□□□ 0.71
VPS54Q9P1Q0 PRSS29P-201ENST00000440800 595 ntBASIC19.5■□□□□ 0.71
VPS54Q9P1Q0 VN2R19P-201ENST00000442399 1052 ntBASIC19.5■□□□□ 0.71
VPS54Q9P1Q0 AC099805.1-202ENST00000519927 1057 ntTSL 5 BASIC19.5■□□□□ 0.71
VPS54Q9P1Q0 SFTPC-204ENST00000520605 519 ntTSL 3 BASIC19.5■□□□□ 0.71
VPS54Q9P1Q0 SFTPC-210ENST00000524255 681 ntTSL 2 BASIC19.5■□□□□ 0.71
VPS54Q9P1Q0 FLJ20021-201ENST00000527564 790 ntTSL 2 BASIC19.5■□□□□ 0.71
VPS54Q9P1Q0 POLD4-207ENST00000531239 584 ntTSL 2 BASIC19.5■□□□□ 0.71
VPS54Q9P1Q0 TRMT112-202ENST00000535126 704 ntTSL 2 BASIC19.5■□□□□ 0.71
VPS54Q9P1Q0 DUSP6-204ENST00000547291 1074 ntTSL 2 BASIC19.5■□□□□ 0.71
VPS54Q9P1Q0 AC087386.1-201ENST00000553658 572 ntTSL 4 BASIC19.5■□□□□ 0.71
VPS54Q9P1Q0 TNFRSF13B-206ENST00000583789 859 ntTSL 1 (best) BASIC19.5■□□□□ 0.71
VPS54Q9P1Q0 AC055811.1-201ENST00000584203 1231 ntTSL 5 BASIC19.5■□□□□ 0.71
VPS54Q9P1Q0 AC011530.1-201ENST00000593999 558 ntTSL 2 BASIC19.5■□□□□ 0.71
VPS54Q9P1Q0 NUTM2B-AS1-211ENST00000601369 1233 ntTSL 2 BASIC19.5■□□□□ 0.71
VPS54Q9P1Q0 SELENOM-210ENST00000611680 689 ntAPPRIS ALT2 TSL 5 BASIC19.5■□□□□ 0.71
VPS54Q9P1Q0 PLCG1-202ENST00000373271 7395 ntAPPRIS ALT1 TSL 1 (best) BASIC19.5■□□□□ 0.71
VPS54Q9P1Q0 FBXO24-206ENST00000468962 1901 ntTSL 2 BASIC19.5■□□□□ 0.71
VPS54Q9P1Q0 GTPBP3-201ENST00000324894 2579 ntAPPRIS ALT2 TSL 1 (best) BASIC19.5■□□□□ 0.71
VPS54Q9P1Q0 MTMR1-208ENST00000445323 4516 ntTSL 1 (best) BASIC19.5■□□□□ 0.71
VPS54Q9P1Q0 ASB6-203ENST00000450050 4535 ntTSL 1 (best) BASIC19.5■□□□□ 0.71
VPS54Q9P1Q0 SLC52A1-201ENST00000254853 2377 ntAPPRIS P1 TSL 1 (best) BASIC19.5■□□□□ 0.71
VPS54Q9P1Q0 NF1-211ENST00000487476 2265 ntTSL 1 (best) BASIC19.5■□□□□ 0.71
VPS54Q9P1Q0 TNK2-AS1-201ENST00000458180 2096 ntTSL 2 BASIC19.5■□□□□ 0.71
VPS54Q9P1Q0 ZFP1-208ENST00000568079 1426 ntTSL 2 BASIC19.5■□□□□ 0.71
VPS54Q9P1Q0 DNMT3A-205ENST00000402667 2300 ntAPPRIS ALT1 TSL 5 BASIC19.5■□□□□ 0.71
Retrieved 100 of 98,524 protein–RNA pairs in 27.6 ms