Protein–RNA interactions for Protein: Q8N205

SYNE4, Nesprin-4, humanhuman

Predictions only

Length 404 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SYNE4Q8N205 BAD-202ENST00000394531 631 ntTSL 3 BASIC20.98■□□□□ 0.95
SYNE4Q8N205 TAS2R41-201ENST00000408916 924 ntAPPRIS P1 BASIC20.98■□□□□ 0.95
SYNE4Q8N205 U52111.1-201ENST00000434284 914 ntTSL 3 BASIC20.98■□□□□ 0.95
SYNE4Q8N205 TMEM91-205ENST00000436170 864 ntTSL 5 BASIC20.98■□□□□ 0.95
SYNE4Q8N205 TMEM176B-205ENST00000450753 1006 ntTSL 2 BASIC20.98■□□□□ 0.95
SYNE4Q8N205 AL391335.1-201ENST00000504583 535 ntTSL 4 BASIC20.98■□□□□ 0.95
SYNE4Q8N205 BAD-207ENST00000544785 525 ntTSL 3 BASIC20.98■□□□□ 0.95
SYNE4Q8N205 PPP1R14A-203ENST00000587515 607 ntTSL 2 BASIC20.98■□□□□ 0.95
SYNE4Q8N205 AC005391.1-201ENST00000613285 341 ntTSL 3 BASIC20.98■□□□□ 0.95
SYNE4Q8N205 AC008267.7-201ENST00000624570 1194 ntBASIC20.98■□□□□ 0.95
SYNE4Q8N205 IL27RA-201ENST00000263379 2962 ntAPPRIS P1 TSL 1 (best) BASIC20.98■□□□□ 0.95
SYNE4Q8N205 JAKMIP1-202ENST00000409021 2975 ntTSL 1 (best) BASIC20.98■□□□□ 0.95
SYNE4Q8N205 IRF5-215ENST00000619830 1652 ntTSL 2 BASIC20.98■□□□□ 0.95
SYNE4Q8N205 ULK1-201ENST00000321867 5310 ntAPPRIS P1 TSL 1 (best) BASIC20.98■□□□□ 0.95
SYNE4Q8N205 ARL13B-203ENST00000394222 2453 ntAPPRIS P1 TSL 1 (best) BASIC20.98■□□□□ 0.95
SYNE4Q8N205 VRK1-201ENST00000216639 1745 ntAPPRIS P1 TSL 1 (best) BASIC20.98■□□□□ 0.95
SYNE4Q8N205 FBXO4-202ENST00000296812 1731 ntTSL 1 (best) BASIC20.98■□□□□ 0.95
SYNE4Q8N205 PABPC1L-217ENST00000537323 1910 ntTSL 1 (best) BASIC20.98■□□□□ 0.95
SYNE4Q8N205 AL671710.1-201ENST00000610245 2349 ntBASIC20.98■□□□□ 0.95
SYNE4Q8N205 UBAP1-203ENST00000379186 2524 ntTSL 5 BASIC20.98■□□□□ 0.95
SYNE4Q8N205 CDC25A-201ENST00000302506 3783 ntAPPRIS P1 TSL 1 (best) BASIC20.97■□□□□ 0.95
SYNE4Q8N205 WLS-202ENST00000354777 2037 ntTSL 1 (best) BASIC20.97■□□□□ 0.95
SYNE4Q8N205 DPEP1-203ENST00000421184 1647 ntAPPRIS P1 TSL 5 BASIC20.97■□□□□ 0.95
SYNE4Q8N205 SKOR1-202ENST00000380035 3675 ntAPPRIS ALT2 TSL 5 BASIC20.97■□□□□ 0.95
SYNE4Q8N205 ABHD14B-206ENST00000483233 2056 ntAPPRIS P1 TSL 1 (best) BASIC20.97■□□□□ 0.95
SYNE4Q8N205 NPM2-203ENST00000397940 1874 ntAPPRIS P2 TSL 2 BASIC20.97■□□□□ 0.95
SYNE4Q8N205 AATK-203ENST00000417379 5081 ntAPPRIS ALT2 TSL 1 (best) BASIC20.97■□□□□ 0.95
SYNE4Q8N205 MUC1-201ENST00000337604 859 ntAPPRIS P3 TSL 1 (best) BASIC20.97■□□□□ 0.95
SYNE4Q8N205 POP5-202ENST00000357500 801 ntAPPRIS P1 TSL 1 (best) BASIC20.97■□□□□ 0.95
SYNE4Q8N205 FAM207CP-201ENST00000443486 507 ntBASIC20.97■□□□□ 0.95
SYNE4Q8N205 BEST1-205ENST00000526988 1263 ntTSL 2 BASIC20.97■□□□□ 0.95
SYNE4Q8N205 ZNF606-202ENST00000546715 636 ntTSL 4 BASIC20.97■□□□□ 0.95
SYNE4Q8N205 RPL13-214ENST00000567815 712 ntAPPRIS P1 TSL 3 BASIC20.97■□□□□ 0.95
SYNE4Q8N205 AL390754.1-201ENST00000619088 582 ntBASIC20.97■□□□□ 0.95
SYNE4Q8N205 CRTAC1-201ENST00000309155 1946 ntAPPRIS ALT2 TSL 1 (best) BASIC20.97■□□□□ 0.95
SYNE4Q8N205 RALGPS1-208ENST00000424082 2362 ntTSL 2 BASIC20.97■□□□□ 0.95
SYNE4Q8N205 MCM9-201ENST00000316068 2442 ntTSL 1 (best) BASIC20.97■□□□□ 0.95
SYNE4Q8N205 RANBP3-201ENST00000034275 1762 ntAPPRIS ALT2 TSL 1 (best) BASIC20.97■□□□□ 0.95
SYNE4Q8N205 ZBTB16-202ENST00000392996 2287 ntAPPRIS P1 TSL 1 (best) BASIC20.97■□□□□ 0.95
SYNE4Q8N205 LARGE2-208ENST00000531526 2528 ntAPPRIS P3 TSL 2 BASIC20.97■□□□□ 0.95
SYNE4Q8N205 LINC00895-201ENST00000629028 1637 ntBASIC20.96■□□□□ 0.95
SYNE4Q8N205 CLDN15-202ENST00000401528 2131 ntAPPRIS P1 TSL 2 BASIC20.96■□□□□ 0.95
SYNE4Q8N205 ZNF200-202ENST00000396870 2373 ntAPPRIS ALT2 TSL 1 (best) BASIC20.96■□□□□ 0.95
SYNE4Q8N205 MIB2-219ENST00000505820 3305 ntAPPRIS P3 TSL 1 (best) BASIC20.96■□□□□ 0.95
SYNE4Q8N205 RPS6KA5-201ENST00000418736 2249 ntTSL 1 (best) BASIC20.96■□□□□ 0.95
SYNE4Q8N205 MUM1-216ENST00000627377 2235 ntAPPRIS ALT2 TSL 5 BASIC20.96■□□□□ 0.95
SYNE4Q8N205 CPT2-208ENST00000636891 2746 ntTSL 5 BASIC20.96■□□□□ 0.95
SYNE4Q8N205 EPS8L2-205ENST00000526198 2289 ntAPPRIS ALT2 TSL 1 (best) BASIC20.96■□□□□ 0.95
SYNE4Q8N205 TXNRD2-218ENST00000542719 2024 ntTSL 1 (best) BASIC20.96■□□□□ 0.95
SYNE4Q8N205 AC092068.3-201ENST00000587894 2016 ntBASIC20.96■□□□□ 0.95
SYNE4Q8N205 F10-202ENST00000375559 1517 ntAPPRIS P1 TSL 1 (best) BASIC20.96■□□□□ 0.95
SYNE4Q8N205 PIP5KL1-201ENST00000300432 1104 ntTSL 1 (best) BASIC20.96■□□□□ 0.95
SYNE4Q8N205 TEX30-202ENST00000376021 1038 ntTSL 2 BASIC20.96■□□□□ 0.95
SYNE4Q8N205 SNHG11-207ENST00000434729 1058 ntTSL 4 BASIC20.96■□□□□ 0.95
SYNE4Q8N205 AC002310.2-201ENST00000486926 950 ntTSL 2 BASIC20.96■□□□□ 0.95
SYNE4Q8N205 IGHV3-42-201ENST00000520410 361 ntBASIC20.96■□□□□ 0.95
SYNE4Q8N205 MIR4453-201ENST00000584019 89 ntBASIC20.96■□□□□ 0.95
SYNE4Q8N205 AC119396.1-201ENST00000576789 1558 ntAPPRIS P1 TSL 5 BASIC20.96■□□□□ 0.95
SYNE4Q8N205 MYC-202ENST00000377970 2351 ntAPPRIS ALT2 TSL 1 (best) BASIC20.96■□□□□ 0.95
SYNE4Q8N205 CGREF1-206ENST00000405600 1346 ntAPPRIS P2 TSL 4 BASIC20.96■□□□□ 0.95
SYNE4Q8N205 ARPC5-201ENST00000294742 1637 ntAPPRIS ALT1 TSL 1 (best) BASIC20.96■□□□□ 0.95
SYNE4Q8N205 AC108860.2-201ENST00000562760 2183 ntBASIC20.96■□□□□ 0.95
SYNE4Q8N205 RHBDF1P1-201ENST00000427504 1941 ntBASIC20.96■□□□□ 0.95
SYNE4Q8N205 TMCO1-207ENST00000580248 1735 ntTSL 2 BASIC20.95■□□□□ 0.94
SYNE4Q8N205 SLC9A3P2-201ENST00000447821 2021 ntBASIC20.95■□□□□ 0.94
SYNE4Q8N205 AL031658.1-201ENST00000449519 2013 ntTSL 2 BASIC20.95■□□□□ 0.94
SYNE4Q8N205 C14orf28-201ENST00000325192 2915 ntAPPRIS P1 TSL 1 (best) BASIC20.95■□□□□ 0.94
SYNE4Q8N205 PHGDH-208ENST00000641023 2096 ntAPPRIS P1 BASIC20.95■□□□□ 0.94
SYNE4Q8N205 SPNS1-202ENST00000323081 2102 ntTSL 2 BASIC20.95■□□□□ 0.94
SYNE4Q8N205 SMIM10-201ENST00000330288 1536 ntAPPRIS P1 BASIC20.95■□□□□ 0.94
SYNE4Q8N205 SNX16-201ENST00000345957 1853 ntAPPRIS P1 TSL 1 (best) BASIC20.95■□□□□ 0.94
SYNE4Q8N205 POP7-201ENST00000303151 927 ntAPPRIS P1 TSL 1 (best) BASIC20.95■□□□□ 0.94
SYNE4Q8N205 VCX-202ENST00000381059 967 ntAPPRIS P2 TSL 1 (best) BASIC20.95■□□□□ 0.94
SYNE4Q8N205 TMEM37-202ENST00000409826 794 ntTSL 3 BASIC20.95■□□□□ 0.94
SYNE4Q8N205 SS18L2-202ENST00000447630 1047 ntAPPRIS P1 TSL 2 BASIC20.95■□□□□ 0.94
SYNE4Q8N205 AC095060.1-201ENST00000502455 549 ntTSL 4 BASIC20.95■□□□□ 0.94
SYNE4Q8N205 AC097493.3-201ENST00000509725 367 ntBASIC20.95■□□□□ 0.94
SYNE4Q8N205 AP005018.1-201ENST00000525475 301 ntBASIC20.95■□□□□ 0.94
SYNE4Q8N205 AC133550.1-201ENST00000563565 295 ntTSL 3 BASIC20.95■□□□□ 0.94
SYNE4Q8N205 AC104581.1-203ENST00000640240 353 ntTSL 2 BASIC20.95■□□□□ 0.94
SYNE4Q8N205 KDM4F-201ENST00000545950 1917 ntAPPRIS P1 BASIC20.95■□□□□ 0.94
SYNE4Q8N205 SPTBN4-207ENST00000595535 6105 ntTSL 5 BASIC20.95■□□□□ 0.94
SYNE4Q8N205 DTX2-211ENST00000446600 2281 ntTSL 2 BASIC20.95■□□□□ 0.94
SYNE4Q8N205 STRN4-204ENST00000539396 2608 ntTSL 2 BASIC20.95■□□□□ 0.94
SYNE4Q8N205 ZNF385A-202ENST00000352268 2076 ntTSL 2 BASIC20.95■□□□□ 0.94
SYNE4Q8N205 QKI-201ENST00000275262 6964 ntTSL 1 (best) BASIC20.95■□□□□ 0.94
SYNE4Q8N205 SORCS2-203ENST00000507866 6152 ntAPPRIS P2 TSL 1 (best) BASIC20.95■□□□□ 0.94
SYNE4Q8N205 PCBP4-203ENST00000428823 1835 ntTSL 5 BASIC20.94■□□□□ 0.94
SYNE4Q8N205 RIMBP3C-202ENST00000433039 5784 ntAPPRIS P2 BASIC20.94■□□□□ 0.94
SYNE4Q8N205 ALMS1P1-202ENST00000450720 1601 ntTSL 1 (best) BASIC20.94■□□□□ 0.94
SYNE4Q8N205 TPM2-201ENST00000329305 1018 ntAPPRIS ALT1 TSL 2 BASIC20.94■□□□□ 0.94
SYNE4Q8N205 ITGA9-AS1-201ENST00000366441 895 ntTSL 3 BASIC20.94■□□□□ 0.94
SYNE4Q8N205 SUMO1-201ENST00000392244 831 ntTSL 2 BASIC20.94■□□□□ 0.94
SYNE4Q8N205 SUMO1-209ENST00000409712 761 ntTSL 2 BASIC20.94■□□□□ 0.94
SYNE4Q8N205 AC092580.3-201ENST00000430932 139 ntBASIC20.94■□□□□ 0.94
SYNE4Q8N205 AL807752.3-201ENST00000456356 748 ntTSL 2 BASIC20.94■□□□□ 0.94
SYNE4Q8N205 CECR7-204ENST00000609932 568 ntTSL 2 BASIC20.94■□□□□ 0.94
SYNE4Q8N205 MIR6080-201ENST00000617359 66 ntBASIC20.94■□□□□ 0.94
SYNE4Q8N205 BAG3-201ENST00000369085 2571 ntAPPRIS P1 TSL 1 (best) BASIC20.94■□□□□ 0.94
SYNE4Q8N205 LINC02012-201ENST00000608206 1725 ntBASIC20.94■□□□□ 0.94
Retrieved 100 of 98,524 protein–RNA pairs in 37 ms