Protein–RNA interactions for Protein: Q8IX30

SCUBE3, Signal peptide, CUB and EGF-like domain-containing protein 3, humanhuman

Predictions only

Length 993 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SCUBE3Q8IX30 RNF216P1-203ENST00000404404 2427 ntBASIC17.83■□□□□ 0.45
SCUBE3Q8IX30 ASB6-203ENST00000450050 4535 ntTSL 1 (best) BASIC17.83■□□□□ 0.45
SCUBE3Q8IX30 PACS2-202ENST00000430725 2944 ntTSL 1 (best) BASIC17.83■□□□□ 0.45
SCUBE3Q8IX30 KRT8P49-201ENST00000604166 1432 ntBASIC17.83■□□□□ 0.45
SCUBE3Q8IX30 IFNGR1-201ENST00000367739 2139 ntAPPRIS P1 TSL 1 (best) BASIC17.83■□□□□ 0.45
SCUBE3Q8IX30 LGMN-202ENST00000393218 2115 ntAPPRIS P1 TSL 1 (best) BASIC17.83■□□□□ 0.45
SCUBE3Q8IX30 IRF1-202ENST00000405885 2061 ntAPPRIS P1 TSL 5 BASIC17.83■□□□□ 0.45
SCUBE3Q8IX30 ATP10A-201ENST00000356865 6680 ntAPPRIS P1 TSL 1 (best) BASIC17.83■□□□□ 0.44
SCUBE3Q8IX30 FO681492.1-201ENST00000623662 5321 ntAPPRIS P5 TSL 2 BASIC17.83■□□□□ 0.44
SCUBE3Q8IX30 TUBB8P12-201ENST00000308911 1335 ntBASIC17.83■□□□□ 0.44
SCUBE3Q8IX30 TUBB7P-202ENST00000428444 1305 ntBASIC17.83■□□□□ 0.44
SCUBE3Q8IX30 TUBB8P7-204ENST00000567960 1332 ntBASIC17.83■□□□□ 0.44
SCUBE3Q8IX30 AC129492.6-201ENST00000611383 1305 ntBASIC17.83■□□□□ 0.44
SCUBE3Q8IX30 CDK1-204ENST00000448257 1948 ntAPPRIS ALT1 TSL 1 (best) BASIC17.83■□□□□ 0.44
SCUBE3Q8IX30 CLDN14-205ENST00000399139 1231 ntAPPRIS P1 TSL 1 (best) BASIC17.83■□□□□ 0.44
SCUBE3Q8IX30 LBH-204ENST00000406087 559 ntTSL 4 BASIC17.83■□□□□ 0.44
SCUBE3Q8IX30 MRPL49-203ENST00000526171 501 ntTSL 2 BASIC17.83■□□□□ 0.44
SCUBE3Q8IX30 AC107918.2-201ENST00000530817 355 ntBASIC17.83■□□□□ 0.44
SCUBE3Q8IX30 PGPEP1-209ENST00000604499 769 ntTSL 5 BASIC17.83■□□□□ 0.44
SCUBE3Q8IX30 AC244517.11-201ENST00000624192 573 ntTSL 5 BASIC17.83■□□□□ 0.44
SCUBE3Q8IX30 CFL1-203ENST00000525451 1878 ntAPPRIS P1 TSL 2 BASIC17.83■□□□□ 0.44
SCUBE3Q8IX30 GNA13-201ENST00000439174 4922 ntAPPRIS P1 TSL 1 (best) BASIC17.83■□□□□ 0.44
SCUBE3Q8IX30 AC020916.1-201ENST00000587762 1774 ntBASIC17.83■□□□□ 0.44
SCUBE3Q8IX30 EIF4A3-201ENST00000269349 1734 ntAPPRIS P1 TSL 1 (best) BASIC17.83■□□□□ 0.44
SCUBE3Q8IX30 BSG-203ENST00000353555 1616 ntTSL 1 (best) BASIC17.83■□□□□ 0.44
SCUBE3Q8IX30 PHKA1-201ENST00000339490 6121 ntAPPRIS ALT1 TSL 1 (best) BASIC17.83■□□□□ 0.44
SCUBE3Q8IX30 MPP1-202ENST00000369534 2042 ntAPPRIS P1 TSL 1 (best) BASIC17.82■□□□□ 0.44
SCUBE3Q8IX30 AC132872.2-201ENST00000581303 2368 ntTSL 5 BASIC17.82■□□□□ 0.44
SCUBE3Q8IX30 TOP3BP1-201ENST00000420768 1380 ntBASIC17.82■□□□□ 0.44
SCUBE3Q8IX30 TCF3-204ENST00000453954 3585 ntTSL 5 BASIC17.82■□□□□ 0.44
SCUBE3Q8IX30 ALDH3A1-205ENST00000444455 1771 ntAPPRIS P1 TSL 5 BASIC17.82■□□□□ 0.44
SCUBE3Q8IX30 APLNR-203ENST00000611099 1789 ntAPPRIS P1 TSL 1 (best) BASIC17.82■□□□□ 0.44
SCUBE3Q8IX30 FAM3D-201ENST00000358781 1319 ntAPPRIS P1 TSL 1 (best) BASIC17.82■□□□□ 0.44
SCUBE3Q8IX30 SARDH-202ENST00000371867 1326 ntTSL 1 (best) BASIC17.82■□□□□ 0.44
SCUBE3Q8IX30 AL731569.1-201ENST00000428940 3058 ntTSL 2 BASIC17.82■□□□□ 0.44
SCUBE3Q8IX30 GLIPR1L1-202ENST00000378695 885 ntAPPRIS ALT2 TSL 1 (best) BASIC17.82■□□□□ 0.44
SCUBE3Q8IX30 ADGRG2-208ENST00000379873 4698 ntTSL 1 (best) BASIC17.82■□□□□ 0.44
SCUBE3Q8IX30 AC139887.2-202ENST00000507446 534 ntTSL 4 BASIC17.82■□□□□ 0.44
SCUBE3Q8IX30 KRT18P58-201ENST00000527480 1120 ntBASIC17.82■□□□□ 0.44
SCUBE3Q8IX30 POLD4-207ENST00000531239 584 ntTSL 2 BASIC17.82■□□□□ 0.44
SCUBE3Q8IX30 AC092865.5-201ENST00000545435 363 ntBASIC17.82■□□□□ 0.44
SCUBE3Q8IX30 NUBP2-214ENST00000568706 913 ntTSL 2 BASIC17.82■□□□□ 0.44
SCUBE3Q8IX30 ARMC7-203ENST00000581078 1002 ntTSL 2 BASIC17.82■□□□□ 0.44
SCUBE3Q8IX30 TNFRSF13B-206ENST00000583789 859 ntTSL 1 (best) BASIC17.82■□□□□ 0.44
SCUBE3Q8IX30 ACYP2-209ENST00000607452 831 ntTSL 2 BASIC17.82■□□□□ 0.44
SCUBE3Q8IX30 CRTC3-201ENST00000268184 2537 ntAPPRIS P3 TSL 1 (best) BASIC17.82■□□□□ 0.44
SCUBE3Q8IX30 KCTD14-201ENST00000353172 1691 ntAPPRIS P3 TSL 1 (best) BASIC17.82■□□□□ 0.44
SCUBE3Q8IX30 LDLRAP1-201ENST00000374338 2940 ntAPPRIS P1 TSL 1 (best) BASIC17.82■□□□□ 0.44
SCUBE3Q8IX30 FAM174B-201ENST00000327355 2792 ntAPPRIS P2 TSL 1 (best) BASIC17.82■□□□□ 0.44
SCUBE3Q8IX30 CRELD1-201ENST00000326434 1994 ntTSL 1 (best) BASIC17.82■□□□□ 0.44
SCUBE3Q8IX30 TTC24-202ENST00000368237 1969 ntAPPRIS P1 TSL 5 BASIC17.82■□□□□ 0.44
SCUBE3Q8IX30 ETV3L-201ENST00000454449 1976 ntAPPRIS P1 TSL 2 BASIC17.82■□□□□ 0.44
SCUBE3Q8IX30 CHTOP-201ENST00000368686 2250 ntTSL 2 BASIC17.82■□□□□ 0.44
SCUBE3Q8IX30 LINC01168-201ENST00000461291 5254 ntTSL 2 BASIC17.82■□□□□ 0.44
SCUBE3Q8IX30 WBP2-219ENST00000626827 1867 ntTSL 5 BASIC17.82■□□□□ 0.44
SCUBE3Q8IX30 PARD3B-206ENST00000462231 2968 ntTSL 1 (best) BASIC17.82■□□□□ 0.44
SCUBE3Q8IX30 PKD1L2-209ENST00000531391 1488 ntTSL 1 (best) BASIC17.82■□□□□ 0.44
SCUBE3Q8IX30 GPX3-209ENST00000614343 1478 ntTSL 1 (best) BASIC17.82■□□□□ 0.44
SCUBE3Q8IX30 CCDC94-201ENST00000262962 1434 ntAPPRIS P1 TSL 1 (best) BASIC17.81■□□□□ 0.44
SCUBE3Q8IX30 PDCD5-203ENST00000419343 1799 ntTSL 2 BASIC17.81■□□□□ 0.44
SCUBE3Q8IX30 AL645728.1-201ENST00000366221 2101 ntBASIC17.81■□□□□ 0.44
SCUBE3Q8IX30 AL096870.2-201ENST00000565988 2108 ntTSL 1 (best) BASIC17.81■□□□□ 0.44
SCUBE3Q8IX30 BET1L-203ENST00000382762 2819 ntAPPRIS P1 TSL 1 (best) BASIC17.81■□□□□ 0.44
SCUBE3Q8IX30 CACNA1B-206ENST00000371372 9790 ntAPPRIS P4 TSL 5 BASIC17.81■□□□□ 0.44
SCUBE3Q8IX30 FGFBP1-201ENST00000382333 1359 ntAPPRIS P1 TSL 3 BASIC17.81■□□□□ 0.44
SCUBE3Q8IX30 GABRB3-202ENST00000311550 5781 ntAPPRIS P1 TSL 1 (best) BASIC17.81■□□□□ 0.44
SCUBE3Q8IX30 MEPCE-201ENST00000310512 3030 ntAPPRIS P1 TSL 1 (best) BASIC17.81■□□□□ 0.44
SCUBE3Q8IX30 PPRC1-201ENST00000278070 5330 ntAPPRIS P1 TSL 1 (best) BASIC17.81■□□□□ 0.44
SCUBE3Q8IX30 SEPHS1-201ENST00000327347 3273 ntAPPRIS P1 TSL 1 (best) BASIC17.81■□□□□ 0.44
SCUBE3Q8IX30 SH2B1-216ENST00000618521 2935 ntTSL 1 (best) BASIC17.81■□□□□ 0.44
SCUBE3Q8IX30 NKAIN1-201ENST00000373736 2589 ntAPPRIS P1 TSL 2 BASIC17.81■□□□□ 0.44
SCUBE3Q8IX30 C16orf71-204ENST00000590191 2564 ntAPPRIS ALT2 TSL 5 BASIC17.81■□□□□ 0.44
SCUBE3Q8IX30 SMTNL2-201ENST00000338859 1919 ntTSL 1 (best) BASIC17.81■□□□□ 0.44
SCUBE3Q8IX30 KLHL7-201ENST00000322275 969 ntTSL 1 (best) BASIC17.81■□□□□ 0.44
SCUBE3Q8IX30 ZAR1L-201ENST00000345108 1103 ntAPPRIS P1 TSL 1 (best) BASIC17.81■□□□□ 0.44
SCUBE3Q8IX30 TNNT3-203ENST00000381557 1019 ntAPPRIS ALT2 TSL 5 BASIC17.81■□□□□ 0.44
SCUBE3Q8IX30 AGTRAP-205ENST00000400895 786 ntTSL 2 BASIC17.81■□□□□ 0.44
SCUBE3Q8IX30 AC007967.2-201ENST00000432613 625 ntBASIC17.81■□□□□ 0.44
SCUBE3Q8IX30 HCG15-203ENST00000438190 1032 ntTSL 3 BASIC17.81■□□□□ 0.44
SCUBE3Q8IX30 DYNC1LI2-202ENST00000440564 1145 ntTSL 2 BASIC17.81■□□□□ 0.44
SCUBE3Q8IX30 CD99L2-206ENST00000466436 988 ntAPPRIS P4 TSL 1 (best) BASIC17.81■□□□□ 0.44
SCUBE3Q8IX30 SFTPC-204ENST00000520605 519 ntTSL 3 BASIC17.81■□□□□ 0.44
SCUBE3Q8IX30 SFTPC-210ENST00000524255 681 ntTSL 2 BASIC17.81■□□□□ 0.44
SCUBE3Q8IX30 SEC23A-206ENST00000553970 574 ntTSL 4 BASIC17.81■□□□□ 0.44
SCUBE3Q8IX30 PIN1-206ENST00000587625 878 ntTSL 2 BASIC17.81■□□□□ 0.44
SCUBE3Q8IX30 EPM2A-201ENST00000367519 3465 ntAPPRIS P1 TSL 1 (best) BASIC17.81■□□□□ 0.44
SCUBE3Q8IX30 CCNL2-203ENST00000408952 1857 ntTSL 5 BASIC17.81■□□□□ 0.44
SCUBE3Q8IX30 BCRP2-201ENST00000398241 1842 ntTSL 2 BASIC17.81■□□□□ 0.44
SCUBE3Q8IX30 DOLK-201ENST00000372586 2090 ntAPPRIS P1 BASIC17.81■□□□□ 0.44
SCUBE3Q8IX30 NUP62-211ENST00000597029 2053 ntAPPRIS P1 TSL 1 (best) BASIC17.81■□□□□ 0.44
SCUBE3Q8IX30 ACTRT3-201ENST00000330368 2005 ntAPPRIS P1 TSL 1 (best) BASIC17.81■□□□□ 0.44
SCUBE3Q8IX30 SH3BP4-202ENST00000392011 5194 ntAPPRIS P1 TSL 1 (best) BASIC17.81■□□□□ 0.44
SCUBE3Q8IX30 RUSC1-209ENST00000471876 1749 ntTSL 1 (best) BASIC17.81■□□□□ 0.44
SCUBE3Q8IX30 SIL1-213ENST00000509534 1714 ntTSL 5 BASIC17.81■□□□□ 0.44
SCUBE3Q8IX30 EIF3J-201ENST00000261868 2569 ntAPPRIS P1 TSL 1 (best) BASIC17.81■□□□□ 0.44
SCUBE3Q8IX30 RPH3AL-222ENST00000618002 2578 ntAPPRIS P2 TSL 5 BASIC17.81■□□□□ 0.44
SCUBE3Q8IX30 SCAI-202ENST00000373549 1968 ntTSL 1 (best) BASIC17.8■□□□□ 0.44
SCUBE3Q8IX30 DNAH14-206ENST00000400952 1984 ntTSL 1 (best) BASIC17.8■□□□□ 0.44
SCUBE3Q8IX30 TTLL5-219ENST00000556977 1961 ntTSL 1 (best) BASIC17.8■□□□□ 0.44
SCUBE3Q8IX30 POLR3E-203ENST00000418581 2529 ntTSL 2 BASIC17.8■□□□□ 0.44
Retrieved 100 of 98,524 protein–RNA pairs in 27.5 ms