Protein–RNA interactions for Protein: Q4VC31

CCDC58, Coiled-coil domain-containing protein 58, humanhuman

Predictions only

Length 144 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC58Q4VC31 HELT-202ENST00000505610 846 ntAPPRIS ALT1 TSL 1 (best) BASIC15.25■□□□□ 0.03
CCDC58Q4VC31 CHEK2P2-202ENST00000555186 864 ntTSL 2 BASIC15.25■□□□□ 0.03
CCDC58Q4VC31 HNF4A-208ENST00000609795 1192 ntTSL 1 (best) BASIC15.25■□□□□ 0.03
CCDC58Q4VC31 AL023973.1-201ENST00000624619 620 ntBASIC15.25■□□□□ 0.03
CCDC58Q4VC31 ROBO3-221ENST00000543966 1520 ntTSL 1 (best) BASIC15.25■□□□□ 0.03
CCDC58Q4VC31 IQCF5-AS1-201ENST00000440723 2000 ntTSL 2 BASIC15.25■□□□□ 0.03
CCDC58Q4VC31 ZNF346-202ENST00000503039 2774 ntTSL 2 BASIC15.25■□□□□ 0.03
CCDC58Q4VC31 ASAP3-212ENST00000618240 2226 ntTSL 5 BASIC15.25■□□□□ 0.03
CCDC58Q4VC31 ANGPTL4-202ENST00000393962 1705 ntTSL 5 BASIC15.25■□□□□ 0.03
CCDC58Q4VC31 REPS1-201ENST00000258062 3161 ntAPPRIS P3 TSL 1 (best) BASIC15.25■□□□□ 0.03
CCDC58Q4VC31 EPHA10-203ENST00000427468 3167 ntAPPRIS ALT2 TSL 5 BASIC15.25■□□□□ 0.03
CCDC58Q4VC31 AC073324.2-201ENST00000626532 2941 ntTSL 4 BASIC15.25■□□□□ 0.03
CCDC58Q4VC31 ROBO3-201ENST00000397801 4569 ntAPPRIS P2 TSL 1 (best) BASIC15.25■□□□□ 0.03
CCDC58Q4VC31 ROBO3-220ENST00000538940 4551 ntAPPRIS ALT2 TSL 5 BASIC15.25■□□□□ 0.03
CCDC58Q4VC31 DMRTC2-204ENST00000596827 1675 ntTSL 2 BASIC15.25■□□□□ 0.03
CCDC58Q4VC31 SMUG1-209ENST00000505128 2607 ntTSL 2 BASIC15.25■□□□□ 0.03
CCDC58Q4VC31 SBNO2-202ENST00000438103 4537 ntAPPRIS ALT2 TSL 2 BASIC15.25■□□□□ 0.03
CCDC58Q4VC31 TRIM9-202ENST00000338969 3312 ntTSL 2 BASIC15.25■□□□□ 0.03
CCDC58Q4VC31 LAT2-202ENST00000344995 2363 ntAPPRIS P2 TSL 1 (best) BASIC15.25■□□□□ 0.03
CCDC58Q4VC31 NAT9-210ENST00000580301 1860 ntTSL 1 (best) BASIC15.25■□□□□ 0.03
CCDC58Q4VC31 AIFM2-202ENST00000373248 2570 ntAPPRIS P1 TSL 1 (best) BASIC15.25■□□□□ 0.03
CCDC58Q4VC31 P2RX5-209ENST00000552276 1642 ntAPPRIS ALT2 TSL 5 BASIC15.25■□□□□ 0.03
CCDC58Q4VC31 PRPS1-204ENST00000372435 2073 ntAPPRIS P1 TSL 1 (best) BASIC15.24■□□□□ 0.03
CCDC58Q4VC31 FGFBP1-201ENST00000382333 1359 ntAPPRIS P1 TSL 3 BASIC15.24■□□□□ 0.03
CCDC58Q4VC31 FAM50A-202ENST00000393600 1352 ntAPPRIS P1 TSL 1 (best) BASIC15.24■□□□□ 0.03
CCDC58Q4VC31 CFAP77-201ENST00000343036 1818 ntAPPRIS P3 TSL 2 BASIC15.24■□□□□ 0.03
CCDC58Q4VC31 DYSF-207ENST00000409762 6727 ntAPPRIS ALT2 TSL 1 (best) BASIC15.24■□□□□ 0.03
CCDC58Q4VC31 DYSF-211ENST00000429174 6739 ntAPPRIS ALT2 TSL 1 (best) BASIC15.24■□□□□ 0.03
CCDC58Q4VC31 ERG28-201ENST00000256319 2633 ntAPPRIS P1 TSL 1 (best) BASIC15.24■□□□□ 0.03
CCDC58Q4VC31 HOPX-201ENST00000317745 1129 ntAPPRIS P1 TSL 1 (best) BASIC15.24■□□□□ 0.03
CCDC58Q4VC31 NT5DC3-201ENST00000392876 7207 ntAPPRIS P1 TSL 1 (best) BASIC15.24■□□□□ 0.03
CCDC58Q4VC31 AL596442.1-201ENST00000429305 429 ntTSL 2 BASIC15.24■□□□□ 0.03
CCDC58Q4VC31 SNCB-205ENST00000510387 730 ntAPPRIS P1 TSL 2 BASIC15.24■□□□□ 0.03
CCDC58Q4VC31 TMA16-209ENST00000513272 803 ntTSL 2 BASIC15.24■□□□□ 0.03
CCDC58Q4VC31 AP002490.2-201ENST00000524791 560 ntBASIC15.24■□□□□ 0.03
CCDC58Q4VC31 FAU-207ENST00000529639 847 ntAPPRIS P1 TSL 1 (best) BASIC15.24■□□□□ 0.03
CCDC58Q4VC31 FGFR1OP2-206ENST00000546072 956 ntTSL 1 (best) BASIC15.24■□□□□ 0.03
CCDC58Q4VC31 AC109462.3-201ENST00000573934 613 ntBASIC15.24■□□□□ 0.03
CCDC58Q4VC31 MIR4497-201ENST00000583208 89 ntBASIC15.24■□□□□ 0.03
CCDC58Q4VC31 AC087645.2-201ENST00000586321 799 ntTSL 3 BASIC15.24■□□□□ 0.03
CCDC58Q4VC31 AC092902.2-222ENST00000626312 568 ntTSL 5 BASIC15.24■□□□□ 0.03
CCDC58Q4VC31 H6PD-201ENST00000377403 9146 ntAPPRIS P1 TSL 1 (best) BASIC15.24■□□□□ 0.03
CCDC58Q4VC31 HMGXB3-202ENST00000503427 5275 ntAPPRIS ALT2 TSL 5 BASIC15.24■□□□□ 0.03
CCDC58Q4VC31 CHKA-201ENST00000265689 2530 ntAPPRIS P4 TSL 1 (best) BASIC15.24■□□□□ 0.03
CCDC58Q4VC31 GRK5-202ENST00000392870 2654 ntAPPRIS P1 TSL 1 (best) BASIC15.24■□□□□ 0.03
CCDC58Q4VC31 DIDO1-201ENST00000266070 8574 ntAPPRIS ALT2 TSL 5 BASIC15.24■□□□□ 0.03
CCDC58Q4VC31 LRRC14-205ENST00000529022 2243 ntAPPRIS P1 TSL 1 (best) BASIC15.24■□□□□ 0.03
CCDC58Q4VC31 ARHGEF1-204ENST00000378152 2986 ntTSL 1 (best) BASIC15.24■□□□□ 0.03
CCDC58Q4VC31 ITGBL1-207ENST00000622834 2369 ntTSL 5 BASIC15.24■□□□□ 0.03
CCDC58Q4VC31 STX3-203ENST00000529177 1571 ntTSL 2 BASIC15.24■□□□□ 0.03
CCDC58Q4VC31 PTPN5-201ENST00000358540 3135 ntTSL 1 (best) BASIC15.23■□□□□ 0.03
CCDC58Q4VC31 ASIC3-201ENST00000297512 1718 ntTSL 1 (best) BASIC15.23■□□□□ 0.03
CCDC58Q4VC31 TSC2-202ENST00000350773 5532 ntAPPRIS ALT2 TSL 1 (best) BASIC15.23■□□□□ 0.03
CCDC58Q4VC31 TRAF2-201ENST00000247668 2264 ntAPPRIS P1 TSL 1 (best) BASIC15.23■□□□□ 0.03
CCDC58Q4VC31 SENP1-204ENST00000549518 2260 ntAPPRIS P2 TSL 1 (best) BASIC15.23■□□□□ 0.03
CCDC58Q4VC31 LY6E-203ENST00000517503 1335 ntAPPRIS ALT2 TSL 3 BASIC15.23■□□□□ 0.03
CCDC58Q4VC31 TBC1D2-201ENST00000342112 3046 ntTSL 2 BASIC15.23■□□□□ 0.03
CCDC58Q4VC31 MCF2L-232ENST00000535094 3752 ntAPPRIS ALT2 TSL 2 BASIC15.23■□□□□ 0.03
CCDC58Q4VC31 STXBP2-201ENST00000221283 1876 ntAPPRIS P3 TSL 1 (best) BASIC15.23■□□□□ 0.03
CCDC58Q4VC31 POC1A-201ENST00000296484 1898 ntAPPRIS P3 TSL 1 (best) BASIC15.23■□□□□ 0.03
CCDC58Q4VC31 KRAS-203ENST00000556131 1696 ntTSL 1 (best) BASIC15.23■□□□□ 0.03
CCDC58Q4VC31 PLK2-215ENST00000617412 2792 ntTSL 5 BASIC15.23■□□□□ 0.03
CCDC58Q4VC31 WDR90-202ENST00000315764 1454 ntTSL 1 (best) BASIC15.23■□□□□ 0.03
CCDC58Q4VC31 FZR1-202ENST00000395095 1491 ntAPPRIS ALT1 TSL 1 (best) BASIC15.23■□□□□ 0.03
CCDC58Q4VC31 FAM53B-AS1-202ENST00000448422 1491 ntTSL 1 (best) BASIC15.23■□□□□ 0.03
CCDC58Q4VC31 NFIX-209ENST00000587760 1487 ntTSL 1 (best) BASIC15.23■□□□□ 0.03
CCDC58Q4VC31 LTBP4-205ENST00000396819 4764 ntAPPRIS ALT2 TSL 1 (best) BASIC15.23■□□□□ 0.03
CCDC58Q4VC31 LRRC57-202ENST00000397130 2384 ntAPPRIS P1 TSL 1 (best) BASIC15.23■□□□□ 0.03
CCDC58Q4VC31 C16orf89-203ENST00000474471 1829 ntAPPRIS ALT2 TSL 5 BASIC15.23■□□□□ 0.03
CCDC58Q4VC31 INPP5F-203ENST00000369081 874 ntTSL 1 (best) BASIC15.23■□□□□ 0.03
CCDC58Q4VC31 HDAC11-205ENST00000404548 577 ntTSL 4 BASIC15.23■□□□□ 0.03
CCDC58Q4VC31 ICAM1-202ENST00000423829 1296 ntTSL 2 BASIC15.23■□□□□ 0.03
CCDC58Q4VC31 ST6GALNAC4P1-201ENST00000435385 499 ntBASIC15.23■□□□□ 0.03
CCDC58Q4VC31 GLI4-207ENST00000521682 1082 ntTSL 3 BASIC15.23■□□□□ 0.03
CCDC58Q4VC31 NEK7-207ENST00000538004 1036 ntAPPRIS P1 TSL 1 (best) BASIC15.23■□□□□ 0.03
CCDC58Q4VC31 PKM-216ENST00000565184 2503 ntAPPRIS ALT1 TSL 1 (best) BASIC15.23■□□□□ 0.03
CCDC58Q4VC31 MBD1-212ENST00000585672 2532 ntTSL 1 (best) BASIC15.23■□□□□ 0.03
CCDC58Q4VC31 KDM4B-203ENST00000536461 5027 ntTSL 1 (best) BASIC15.23■□□□□ 0.03
CCDC58Q4VC31 ZFAND5-204ENST00000376960 2686 ntAPPRIS P1 TSL 1 (best) BASIC15.23■□□□□ 0.03
CCDC58Q4VC31 CACNA1G-201ENST00000352832 7848 ntAPPRIS ALT2 TSL 1 (best) BASIC15.23■□□□□ 0.03
CCDC58Q4VC31 COL17A1-202ENST00000369733 5488 ntAPPRIS ALT2 TSL 5 BASIC15.23■□□□□ 0.03
CCDC58Q4VC31 PAPLN-202ENST00000340738 5834 ntAPPRIS P2 TSL 5 BASIC15.23■□□□□ 0.03
CCDC58Q4VC31 NPY5R-203ENST00000515560 3183 ntAPPRIS P1 TSL 2 BASIC15.23■□□□□ 0.03
CCDC58Q4VC31 HES1-201ENST00000232424 1578 ntAPPRIS P1 TSL 1 (best) BASIC15.23■□□□□ 0.03
CCDC58Q4VC31 FADS2-201ENST00000257261 2964 ntTSL 1 (best) BASIC15.23■□□□□ 0.03
CCDC58Q4VC31 KLC4-202ENST00000347162 2404 ntAPPRIS ALT2 TSL 1 (best) BASIC15.23■□□□□ 0.03
CCDC58Q4VC31 QRFPR-202ENST00000394427 1708 ntAPPRIS P1 TSL 1 (best) BASIC15.23■□□□□ 0.03
CCDC58Q4VC31 EVA1A-205ENST00000410113 1747 ntAPPRIS P2 TSL 3 BASIC15.23■□□□□ 0.03
CCDC58Q4VC31 C1QTNF1-209ENST00000581774 1368 ntAPPRIS P1 TSL 1 (best) BASIC15.23■□□□□ 0.03
CCDC58Q4VC31 ANKRD23-201ENST00000318357 2597 ntAPPRIS P1 TSL 1 (best) BASIC15.23■□□□□ 0.03
CCDC58Q4VC31 MFSD1-202ENST00000392813 2244 ntTSL 2 BASIC15.23■□□□□ 0.03
CCDC58Q4VC31 SLC29A2-207ENST00000619145 2380 ntTSL 5 BASIC15.22■□□□□ 0.03
CCDC58Q4VC31 ITGB7-201ENST00000267082 2867 ntAPPRIS P1 TSL 1 (best) BASIC15.22■□□□□ 0.03
CCDC58Q4VC31 TTBK1-201ENST00000259750 6932 ntAPPRIS P1 TSL 1 (best) BASIC15.22■□□□□ 0.03
CCDC58Q4VC31 FAM227B-201ENST00000299338 2008 ntAPPRIS P3 TSL 2 BASIC15.22■□□□□ 0.03
CCDC58Q4VC31 USP27X-201ENST00000621775 2618 ntAPPRIS P1 BASIC15.22■□□□□ 0.03
CCDC58Q4VC31 IFNLR1-205ENST00000374421 1476 ntAPPRIS ALT2 TSL 1 (best) BASIC15.22■□□□□ 0.03
CCDC58Q4VC31 TLX2-204ENST00000621092 1452 ntTSL 1 (best) BASIC15.22■□□□□ 0.03
CCDC58Q4VC31 PLPPR5-201ENST00000263177 3288 ntAPPRIS P4 TSL 1 (best) BASIC15.22■□□□□ 0.03
CCDC58Q4VC31 PODN-202ENST00000371500 3287 ntAPPRIS ALT2 TSL 1 (best) BASIC15.22■□□□□ 0.03
Retrieved 100 of 98,524 protein–RNA pairs in 27.5 ms