Protein–RNA interactions for Protein: P25942

CD40, Tumor necrosis factor receptor superfamily member 5, humanhuman

Predictions only

Length 277 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CD40P25942 NR1H3-204ENST00000407404 1330 ntTSL 5 BASIC14.61□□□□□ -0.07
CD40P25942 ANKFY1-202ENST00000570535 6458 ntTSL 1 (best) BASIC14.61□□□□□ -0.07
CD40P25942 KDM6A-211ENST00000536777 5633 ntTSL 1 (best) BASIC14.61□□□□□ -0.07
CD40P25942 GFY-201ENST00000576655 1876 ntAPPRIS P1 TSL 5 BASIC14.61□□□□□ -0.07
CD40P25942 T-201ENST00000296946 2436 ntAPPRIS P1 TSL 5 BASIC14.61□□□□□ -0.07
CD40P25942 ORAI2-205ENST00000478730 5531 ntAPPRIS P1 TSL 2 BASIC14.61□□□□□ -0.07
CD40P25942 TRAF2-201ENST00000247668 2264 ntAPPRIS P1 TSL 1 (best) BASIC14.61□□□□□ -0.07
CD40P25942 RAD51D-201ENST00000335858 1353 ntTSL 1 (best) BASIC14.6□□□□□ -0.07
CD40P25942 RAPH1-211ENST00000457812 2673 ntAPPRIS ALT2 TSL 2 BASIC14.6□□□□□ -0.07
CD40P25942 TLE2-217ENST00000590536 2344 ntAPPRIS ALT2 TSL 1 (best) BASIC14.6□□□□□ -0.07
CD40P25942 RBPJ-204ENST00000348160 1752 ntAPPRIS ALT1 TSL 1 (best) BASIC14.6□□□□□ -0.07
CD40P25942 C6orf223-203ENST00000442114 3109 ntAPPRIS ALT2 TSL 1 (best) BASIC14.6□□□□□ -0.07
CD40P25942 MEG3-205ENST00000412736 1615 ntTSL 2 BASIC14.6□□□□□ -0.07
CD40P25942 TPM1-205ENST00000357980 1800 ntTSL 2 BASIC14.6□□□□□ -0.07
CD40P25942 ATOH1-201ENST00000306011 2212 ntAPPRIS P1 BASIC14.6□□□□□ -0.07
CD40P25942 CACNA1A-221ENST00000636012 7500 ntAPPRIS ALT2 TSL 5 BASIC14.6□□□□□ -0.07
CD40P25942 PHF19-201ENST00000312189 836 ntTSL 1 (best) BASIC14.6□□□□□ -0.07
CD40P25942 LINC00029-202ENST00000414668 1117 ntTSL 1 (best) BASIC14.6□□□□□ -0.07
CD40P25942 MCF2L-AS1-201ENST00000446789 712 ntTSL 3 BASIC14.6□□□□□ -0.07
CD40P25942 SEC24B-AS1-201ENST00000499359 957 ntTSL 1 (best) BASIC14.6□□□□□ -0.07
CD40P25942 REEP2-206ENST00000506158 1021 ntTSL 2 BASIC14.6□□□□□ -0.07
CD40P25942 SNCA-209ENST00000506244 570 ntAPPRIS P1 TSL 2 BASIC14.6□□□□□ -0.07
CD40P25942 PP7080-203ENST00000510604 859 ntTSL 1 (best) BASIC14.6□□□□□ -0.07
CD40P25942 SEC24B-AS1-204ENST00000510971 554 ntTSL 4 BASIC14.6□□□□□ -0.07
CD40P25942 THTPA-204ENST00000554970 569 ntTSL 4 BASIC14.6□□□□□ -0.07
CD40P25942 THTPA-206ENST00000556015 535 ntTSL 3 BASIC14.6□□□□□ -0.07
CD40P25942 DUX4L17-201ENST00000557360 1267 ntBASIC14.6□□□□□ -0.07
CD40P25942 CEMP1-201ENST00000565480 519 ntAPPRIS ALT2 TSL 3 BASIC14.6□□□□□ -0.07
CD40P25942 MARVELD3-206ENST00000567566 850 ntAPPRIS ALT2 TSL 1 (best) BASIC14.6□□□□□ -0.07
CD40P25942 FBP1-201ENST00000375326 1462 ntAPPRIS P1 TSL 1 (best) BASIC14.6□□□□□ -0.07
CD40P25942 ATG2A-203ENST00000421419 1481 ntTSL 1 (best) BASIC14.6□□□□□ -0.07
CD40P25942 PAAF1-205ENST00000535604 1695 ntTSL 5 BASIC14.6□□□□□ -0.07
CD40P25942 NFATC4-231ENST00000557451 5613 ntAPPRIS ALT2 TSL 1 (best) BASIC14.6□□□□□ -0.07
CD40P25942 PLK3-201ENST00000372201 2492 ntAPPRIS P1 TSL 1 (best) BASIC14.6□□□□□ -0.07
CD40P25942 B4GALT4-216ENST00000483209 2494 ntAPPRIS P1 TSL 1 (best) BASIC14.6□□□□□ -0.07
CD40P25942 KCNE3-201ENST00000310128 3143 ntAPPRIS P1 TSL 1 (best) BASIC14.6□□□□□ -0.07
CD40P25942 ACTN3-203ENST00000513398 2939 ntAPPRIS P1 TSL 1 (best) BASIC14.6□□□□□ -0.07
CD40P25942 ZNF200-202ENST00000396870 2373 ntAPPRIS ALT2 TSL 1 (best) BASIC14.6□□□□□ -0.07
CD40P25942 KCNV2-201ENST00000382082 2186 ntAPPRIS P1 TSL 1 (best) BASIC14.6□□□□□ -0.07
CD40P25942 RGS3-211ENST00000462403 2155 ntTSL 1 (best) BASIC14.6□□□□□ -0.07
CD40P25942 UBAC2-203ENST00000403766 1375 ntAPPRIS P1 TSL 2 BASIC14.6□□□□□ -0.07
CD40P25942 SLC30A2-202ENST00000374278 3097 ntTSL 1 (best) BASIC14.6□□□□□ -0.07
CD40P25942 SHISA6-204ENST00000441885 7575 ntAPPRIS P3 TSL 5 BASIC14.59□□□□□ -0.07
CD40P25942 HOXA2-201ENST00000222718 1814 ntAPPRIS P1 TSL 1 (best) BASIC14.59□□□□□ -0.07
CD40P25942 LRCH3-201ENST00000334859 2258 ntTSL 1 (best) BASIC14.59□□□□□ -0.07
CD40P25942 AC068944.1-201ENST00000514855 1604 ntTSL 2 BASIC14.59□□□□□ -0.07
CD40P25942 RIC8A-201ENST00000325207 2702 ntAPPRIS P3 TSL 1 (best) BASIC14.59□□□□□ -0.07
CD40P25942 SLC35E4-201ENST00000343605 2714 ntAPPRIS P1 TSL 1 (best) BASIC14.59□□□□□ -0.07
CD40P25942 ABHD14B-206ENST00000483233 2056 ntAPPRIS P1 TSL 1 (best) BASIC14.59□□□□□ -0.07
CD40P25942 GNA13-201ENST00000439174 4922 ntAPPRIS P1 TSL 1 (best) BASIC14.59□□□□□ -0.07
CD40P25942 KRT8P49-201ENST00000604166 1432 ntBASIC14.59□□□□□ -0.07
CD40P25942 TEAD4-202ENST00000359864 1690 ntAPPRIS P1 TSL 1 (best) BASIC14.59□□□□□ -0.07
CD40P25942 ZNF454-202ENST00000519564 2142 ntAPPRIS P1 TSL 2 BASIC14.59□□□□□ -0.07
CD40P25942 RHBDF1P1-201ENST00000427504 1941 ntBASIC14.59□□□□□ -0.07
CD40P25942 CSNK2A1-203ENST00000400217 1451 ntTSL 2 BASIC14.59□□□□□ -0.07
CD40P25942 STRN4-204ENST00000539396 2608 ntTSL 2 BASIC14.59□□□□□ -0.07
CD40P25942 SIL1-213ENST00000509534 1714 ntTSL 5 BASIC14.59□□□□□ -0.07
CD40P25942 PIGT-257ENST00000640210 1715 ntTSL 5 BASIC14.59□□□□□ -0.07
CD40P25942 PRORY-201ENST00000382764 878 ntAPPRIS P1 TSL 5 BASIC14.59□□□□□ -0.07
CD40P25942 NDUFA4L2-201ENST00000393825 1186 ntAPPRIS P1 TSL 1 (best) BASIC14.59□□□□□ -0.07
CD40P25942 AL160408.2-201ENST00000436039 693 ntTSL 3 BASIC14.59□□□□□ -0.07
CD40P25942 TSPAN32-207ENST00000451520 1236 ntAPPRIS ALT2 TSL 2 BASIC14.59□□□□□ -0.07
CD40P25942 AC005020.2-201ENST00000455905 830 ntAPPRIS P1 TSL 3 BASIC14.59□□□□□ -0.07
CD40P25942 AC124947.2-201ENST00000547118 1133 ntBASIC14.59□□□□□ -0.07
CD40P25942 SLC9A3-AS1-205ENST00000606319 477 ntTSL 3 BASIC14.59□□□□□ -0.07
CD40P25942 CDH23-205ENST00000398809 4533 ntTSL 5 BASIC14.59□□□□□ -0.07
CD40P25942 AP003071.5-201ENST00000641568 2695 ntAPPRIS P1 BASIC14.59□□□□□ -0.07
CD40P25942 BICD2-201ENST00000356884 6427 ntAPPRIS ALT2 TSL 1 (best) BASIC14.59□□□□□ -0.07
CD40P25942 PP12613-201ENST00000424958 2230 ntBASIC14.59□□□□□ -0.07
CD40P25942 RPAIN-203ENST00000381209 1535 ntAPPRIS P1 TSL 1 (best) BASIC14.59□□□□□ -0.07
CD40P25942 CCDC137-201ENST00000329214 2468 ntAPPRIS P2 TSL 1 (best) BASIC14.59□□□□□ -0.07
CD40P25942 C16orf58-202ENST00000430477 2471 ntAPPRIS P2 TSL 1 (best) BASIC14.59□□□□□ -0.07
CD40P25942 CNNM3-201ENST00000305510 3447 ntAPPRIS P1 TSL 1 (best) BASIC14.59□□□□□ -0.07
CD40P25942 MBOAT1-201ENST00000324607 1794 ntAPPRIS P1 TSL 1 (best) BASIC14.59□□□□□ -0.07
CD40P25942 AHR-201ENST00000242057 6276 ntAPPRIS P1 TSL 1 (best) BASIC14.59□□□□□ -0.07
CD40P25942 PLCB2-201ENST00000260402 4616 ntAPPRIS P3 TSL 2 BASIC14.59□□□□□ -0.07
CD40P25942 CROCCP3-201ENST00000263511 5368 ntTSL 1 (best) BASIC14.59□□□□□ -0.07
CD40P25942 RMDN3-202ENST00000338376 2251 ntAPPRIS P1 TSL 1 (best) BASIC14.59□□□□□ -0.07
CD40P25942 ULBP2-201ENST00000367351 1349 ntAPPRIS P1 TSL 1 (best) BASIC14.59□□□□□ -0.07
CD40P25942 COMMD5-202ENST00000402718 1305 ntAPPRIS P1 TSL 1 (best) BASIC14.59□□□□□ -0.07
CD40P25942 TTLL3-209ENST00000426895 2767 ntAPPRIS P2 TSL 2 BASIC14.59□□□□□ -0.07
CD40P25942 TEX264-202ENST00000395057 1555 ntAPPRIS P3 TSL 1 (best) BASIC14.59□□□□□ -0.07
CD40P25942 ALDH3A2-225ENST00000630662 1558 ntTSL 5 BASIC14.59□□□□□ -0.07
CD40P25942 VPS13B-201ENST00000355155 2822 ntTSL 1 (best) BASIC14.59□□□□□ -0.07
CD40P25942 SPNS1-202ENST00000323081 2102 ntTSL 2 BASIC14.59□□□□□ -0.07
CD40P25942 CLDN15-202ENST00000401528 2131 ntAPPRIS P1 TSL 2 BASIC14.59□□□□□ -0.07
CD40P25942 MARK2-207ENST00000502399 2885 ntAPPRIS ALT2 TSL 5 BASIC14.59□□□□□ -0.07
CD40P25942 AL590627.1-201ENST00000626603 1910 ntTSL 2 BASIC14.58□□□□□ -0.07
CD40P25942 BSCL2-210ENST00000421906 1440 ntAPPRIS P3 TSL 5 BASIC14.58□□□□□ -0.07
CD40P25942 SCRIB-203ENST00000377533 5108 ntAPPRIS ALT2 TSL 1 (best) BASIC14.58□□□□□ -0.07
CD40P25942 SCAI-202ENST00000373549 1968 ntTSL 1 (best) BASIC14.58□□□□□ -0.07
CD40P25942 ADM5-201ENST00000420022 1718 ntAPPRIS P1 TSL 1 (best) BASIC14.58□□□□□ -0.07
CD40P25942 PIP5K1A-207ENST00000441902 2297 ntTSL 2 BASIC14.58□□□□□ -0.08
CD40P25942 LINC00957-202ENST00000441052 2590 ntTSL 2 BASIC14.58□□□□□ -0.08
CD40P25942 MYO1B-202ENST00000339514 5026 ntTSL 1 (best) BASIC14.58□□□□□ -0.08
CD40P25942 WLS-205ENST00000370976 2332 ntTSL 1 (best) BASIC14.58□□□□□ -0.08
CD40P25942 HSF2-202ENST00000452194 2643 ntAPPRIS ALT2 TSL 1 (best) BASIC14.58□□□□□ -0.08
CD40P25942 GTPBP2-202ENST00000307126 2933 ntAPPRIS P1 TSL 1 (best) BASIC14.58□□□□□ -0.08
CD40P25942 ZFP64-205ENST00000371518 1841 ntTSL 1 (best) BASIC14.58□□□□□ -0.08
CD40P25942 XKR8-201ENST00000373884 2692 ntAPPRIS P1 TSL 1 (best) BASIC14.58□□□□□ -0.08
Retrieved 100 of 98,524 protein–RNA pairs in 27.6 ms