Protein–RNA interactions for Protein: Q2UY09

COL28A1, Collagen alpha-1(XXVIII) chain, humanhuman

Predictions only

Length 1,125 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
COL28A1Q2UY09 FOXS1-201ENST00000375978 1319 ntAPPRIS P1 BASIC16.36■□□□□ 0.21
COL28A1Q2UY09 BICD1-205ENST00000550207 1328 ntTSL 3 BASIC16.36■□□□□ 0.21
COL28A1Q2UY09 WNK2-201ENST00000297954 7138 ntAPPRIS P2 TSL 1 (best) BASIC16.36■□□□□ 0.21
COL28A1Q2UY09 KLHL33-202ENST00000636854 2394 ntAPPRIS P1 TSL 5 BASIC16.36■□□□□ 0.21
COL28A1Q2UY09 ADRA1A-205ENST00000380582 2089 ntTSL 1 (best) BASIC16.36■□□□□ 0.21
COL28A1Q2UY09 RNFT2-204ENST00000407967 2415 ntTSL 5 BASIC16.36■□□□□ 0.21
COL28A1Q2UY09 PDE2A-226ENST00000544570 3119 ntTSL 5 BASIC16.36■□□□□ 0.21
COL28A1Q2UY09 AC133785.1-201ENST00000429282 2824 ntTSL 2 BASIC16.36■□□□□ 0.21
COL28A1Q2UY09 PPT2-247ENST00000375143 1754 ntAPPRIS ALT2 TSL 5 BASIC16.36■□□□□ 0.21
COL28A1Q2UY09 TADA1-201ENST00000367874 2159 ntAPPRIS P1 TSL 1 (best) BASIC16.36■□□□□ 0.21
COL28A1Q2UY09 PTP4A1-201ENST00000370651 5088 ntAPPRIS P1 TSL 1 (best) BASIC16.36■□□□□ 0.21
COL28A1Q2UY09 AC006064.2-201ENST00000501075 2196 ntTSL 2 BASIC16.36■□□□□ 0.21
COL28A1Q2UY09 LINC01215-201ENST00000607746 2592 ntTSL 3 BASIC16.35■□□□□ 0.21
COL28A1Q2UY09 SLC22A4-201ENST00000200652 2201 ntAPPRIS P1 TSL 1 (best) BASIC16.35■□□□□ 0.21
COL28A1Q2UY09 CYP7B1-201ENST00000310193 2202 ntAPPRIS P1 TSL 1 (best) BASIC16.35■□□□□ 0.21
COL28A1Q2UY09 RTKN-203ENST00000305557 2646 ntAPPRIS P3 TSL 5 BASIC16.35■□□□□ 0.21
COL28A1Q2UY09 GATB-213ENST00000515812 1893 ntTSL 5 BASIC16.35■□□□□ 0.21
COL28A1Q2UY09 ANXA8-203ENST00000583874 1860 ntTSL 1 (best) BASIC16.35■□□□□ 0.21
COL28A1Q2UY09 ZNF584-209ENST00000599238 2288 ntTSL 1 (best) BASIC16.35■□□□□ 0.21
COL28A1Q2UY09 RELA-226ENST00000612991 2266 ntTSL 1 (best) BASIC16.35■□□□□ 0.21
COL28A1Q2UY09 KRT18P55-202ENST00000578578 1546 ntBASIC16.35■□□□□ 0.21
COL28A1Q2UY09 BAZ1B-201ENST00000339594 6102 ntAPPRIS P1 TSL 1 (best) BASIC16.35■□□□□ 0.21
COL28A1Q2UY09 DUOXA1-201ENST00000267803 1996 ntTSL 1 (best) BASIC16.35■□□□□ 0.21
COL28A1Q2UY09 P2RY6-202ENST00000393590 2398 ntAPPRIS P1 TSL 1 (best) BASIC16.35■□□□□ 0.21
COL28A1Q2UY09 PRRT2-216ENST00000637403 2033 ntTSL 5 BASIC16.35■□□□□ 0.21
COL28A1Q2UY09 RPS12-201ENST00000230050 631 ntAPPRIS P1 TSL 1 (best) BASIC16.35■□□□□ 0.21
COL28A1Q2UY09 NDUFA3-201ENST00000303553 379 ntTSL 2 BASIC16.35■□□□□ 0.21
COL28A1Q2UY09 CD37-201ENST00000323906 1265 ntAPPRIS P1 TSL 1 (best) BASIC16.35■□□□□ 0.21
COL28A1Q2UY09 ASTL-201ENST00000342380 1296 ntAPPRIS P1 TSL 1 (best) BASIC16.35■□□□□ 0.21
COL28A1Q2UY09 SNHG5-201ENST00000369605 1032 ntTSL 1 (best) BASIC16.35■□□□□ 0.21
COL28A1Q2UY09 VMA21-202ENST00000370361 693 ntTSL 5 BASIC16.35■□□□□ 0.21
COL28A1Q2UY09 AC093423.3-201ENST00000370453 654 ntAPPRIS P1 TSL 5 BASIC16.35■□□□□ 0.21
COL28A1Q2UY09 LINC00404-201ENST00000418660 428 ntTSL 2 BASIC16.35■□□□□ 0.21
COL28A1Q2UY09 NKTR-203ENST00000442970 646 ntTSL 2 BASIC16.35■□□□□ 0.21
COL28A1Q2UY09 MACROD2-AS1-202ENST00000455291 663 ntTSL 2 BASIC16.35■□□□□ 0.21
COL28A1Q2UY09 RBAKDN-201ENST00000498308 514 ntTSL 1 (best) BASIC16.35■□□□□ 0.21
COL28A1Q2UY09 IGHV3-42-201ENST00000520410 361 ntBASIC16.35■□□□□ 0.21
COL28A1Q2UY09 AC010776.2-201ENST00000588946 1081 ntTSL 2 BASIC16.35■□□□□ 0.21
COL28A1Q2UY09 AC244153.1-203ENST00000622796 419 ntTSL 2 BASIC16.35■□□□□ 0.21
COL28A1Q2UY09 AC025048.6-201ENST00000634326 1161 ntBASIC16.35■□□□□ 0.21
COL28A1Q2UY09 KCNQ2-207ENST00000370224 3004 ntTSL 5 BASIC16.35■□□□□ 0.21
COL28A1Q2UY09 NBL1-210ENST00000615215 2160 ntAPPRIS ALT2 TSL 1 (best) BASIC16.35■□□□□ 0.21
COL28A1Q2UY09 PCDHA7-202ENST00000525929 5221 ntAPPRIS P2 TSL 1 (best) BASIC16.35■□□□□ 0.21
COL28A1Q2UY09 PLCH2-203ENST00000378486 4837 ntAPPRIS P1 TSL 1 (best) BASIC16.35■□□□□ 0.21
COL28A1Q2UY09 PLCH2-204ENST00000419816 4837 ntAPPRIS P1 TSL 5 BASIC16.35■□□□□ 0.21
COL28A1Q2UY09 PDGFA-201ENST00000354513 1308 ntTSL 1 (best) BASIC16.35■□□□□ 0.21
COL28A1Q2UY09 TUBB3P1-201ENST00000405796 1332 ntBASIC16.35■□□□□ 0.21
COL28A1Q2UY09 BSG-215ENST00000618006 1329 ntTSL 2 BASIC16.35■□□□□ 0.21
COL28A1Q2UY09 MFGE8-202ENST00000268151 1752 ntTSL 1 (best) BASIC16.35■□□□□ 0.21
COL28A1Q2UY09 UNC13A-206ENST00000552293 5314 ntAPPRIS ALT2 TSL 5 BASIC16.35■□□□□ 0.21
COL28A1Q2UY09 LHX3-203ENST00000619587 2698 ntTSL 1 (best) BASIC16.35■□□□□ 0.21
COL28A1Q2UY09 MYH14-202ENST00000376970 6787 ntAPPRIS ALT2 TSL 5 BASIC16.35■□□□□ 0.21
COL28A1Q2UY09 HPS3-202ENST00000460120 2745 ntTSL 2 BASIC16.35■□□□□ 0.21
COL28A1Q2UY09 TREX2-201ENST00000330912 2262 ntAPPRIS P1 TSL 1 (best) BASIC16.35■□□□□ 0.21
COL28A1Q2UY09 FAM174A-201ENST00000312637 1356 ntAPPRIS P1 TSL 1 (best) BASIC16.35■□□□□ 0.21
COL28A1Q2UY09 IRF8-203ENST00000563180 1394 ntTSL 1 (best) BASIC16.35■□□□□ 0.21
COL28A1Q2UY09 SULT1A1-204ENST00000395609 1871 ntAPPRIS P1 TSL 1 (best) BASIC16.35■□□□□ 0.21
COL28A1Q2UY09 ZNF746-202ENST00000458143 3797 ntAPPRIS ALT2 TSL 2 BASIC16.35■□□□□ 0.21
COL28A1Q2UY09 C3orf58-201ENST00000315691 4346 ntAPPRIS P1 TSL 1 (best) BASIC16.35■□□□□ 0.21
COL28A1Q2UY09 SLX1B-SULT1A4-201ENST00000344620 2424 ntTSL 2 BASIC16.35■□□□□ 0.21
COL28A1Q2UY09 NID1-202ENST00000366595 5412 ntTSL 1 (best) BASIC16.35■□□□□ 0.21
COL28A1Q2UY09 TMEM216-203ENST00000515837 1958 ntAPPRIS P2 TSL 2 BASIC16.35■□□□□ 0.21
COL28A1Q2UY09 LRRC58-201ENST00000295628 7903 ntAPPRIS P1 TSL 1 (best) BASIC16.35■□□□□ 0.21
COL28A1Q2UY09 AEBP1-206ENST00000450684 2571 ntTSL 2 BASIC16.34■□□□□ 0.21
COL28A1Q2UY09 NRSN2-202ENST00000382291 2088 ntAPPRIS P1 TSL 2 BASIC16.34■□□□□ 0.21
COL28A1Q2UY09 ZDHHC4-205ENST00000396713 1552 ntAPPRIS P1 TSL 1 (best) BASIC16.34■□□□□ 0.21
COL28A1Q2UY09 PRSS53-201ENST00000280606 2181 ntAPPRIS P1 TSL 1 (best) BASIC16.34■□□□□ 0.21
COL28A1Q2UY09 C2CD3-213ENST00000539061 2722 ntTSL 2 BASIC16.34■□□□□ 0.21
COL28A1Q2UY09 HLA-DQB1-201ENST00000374943 1656 ntBASIC16.34■□□□□ 0.21
COL28A1Q2UY09 SNTB1-201ENST00000395601 5164 ntAPPRIS P1 TSL 5 BASIC16.34■□□□□ 0.21
COL28A1Q2UY09 NDUFS7-210ENST00000539480 1743 ntTSL 2 BASIC16.34■□□□□ 0.21
COL28A1Q2UY09 COA5-201ENST00000328709 1754 ntAPPRIS P1 TSL 1 (best) BASIC16.34■□□□□ 0.21
COL28A1Q2UY09 ZADH2-201ENST00000322342 7732 ntAPPRIS P1 TSL 1 (best) BASIC16.34■□□□□ 0.21
COL28A1Q2UY09 PIANP-204ENST00000540656 2432 ntAPPRIS P3 TSL 2 BASIC16.34■□□□□ 0.21
COL28A1Q2UY09 ALG5-201ENST00000239891 1154 ntAPPRIS P1 TSL 1 (best) BASIC16.34■□□□□ 0.21
COL28A1Q2UY09 FNDC11-202ENST00000370098 1112 ntAPPRIS P1 TSL 1 (best) BASIC16.34■□□□□ 0.21
COL28A1Q2UY09 ADIRF-201ENST00000372013 917 ntAPPRIS P1 TSL 1 (best) BASIC16.34■□□□□ 0.21
COL28A1Q2UY09 LYPLA2-204ENST00000374505 907 ntTSL 3 BASIC16.34■□□□□ 0.21
COL28A1Q2UY09 HUS1B-201ENST00000380907 1025 ntAPPRIS P1 BASIC16.34■□□□□ 0.21
COL28A1Q2UY09 HDAC11-202ENST00000402259 1000 ntTSL 3 BASIC16.34■□□□□ 0.21
COL28A1Q2UY09 CENPM-203ENST00000402338 1002 ntTSL 2 BASIC16.34■□□□□ 0.21
COL28A1Q2UY09 ARSEP1-201ENST00000420443 635 ntBASIC16.34■□□□□ 0.21
COL28A1Q2UY09 AL020989.1-201ENST00000422979 469 ntBASIC16.34■□□□□ 0.21
COL28A1Q2UY09 AC005237.2-201ENST00000434368 219 ntBASIC16.34■□□□□ 0.21
COL28A1Q2UY09 KLF2P3-201ENST00000451977 1087 ntBASIC16.34■□□□□ 0.21
COL28A1Q2UY09 GNG4-205ENST00000484517 684 ntAPPRIS P1 TSL 2 BASIC16.34■□□□□ 0.21
COL28A1Q2UY09 SERF1A-207ENST00000512649 846 ntTSL 2 BASIC16.34■□□□□ 0.21
COL28A1Q2UY09 AL596325.1-201ENST00000563991 1082 ntBASIC16.34■□□□□ 0.21
COL28A1Q2UY09 TMEM220-AS1-206ENST00000583343 876 ntTSL 3 BASIC16.34■□□□□ 0.21
COL28A1Q2UY09 AL390754.1-201ENST00000619088 582 ntBASIC16.34■□□□□ 0.21
COL28A1Q2UY09 SEPT2-208ENST00000407971 3267 ntTSL 5 BASIC16.34■□□□□ 0.21
COL28A1Q2UY09 TCTEX1D1-201ENST00000282670 2001 ntAPPRIS P1 TSL 1 (best) BASIC16.34■□□□□ 0.21
COL28A1Q2UY09 ATXN2-201ENST00000377617 4702 ntAPPRIS P3 TSL 1 (best) BASIC16.34■□□□□ 0.21
COL28A1Q2UY09 SMIM25-203ENST00000425497 2010 ntTSL 1 (best) BASIC16.34■□□□□ 0.21
COL28A1Q2UY09 YAP1-211ENST00000629586 1365 ntTSL 5 BASIC16.34■□□□□ 0.21
COL28A1Q2UY09 NFATC1-206ENST00000542384 2142 ntAPPRIS ALT2 TSL 1 (best) BASIC16.34■□□□□ 0.21
COL28A1Q2UY09 MDM2-209ENST00000393412 1404 ntTSL 5 BASIC16.34■□□□□ 0.21
COL28A1Q2UY09 CDC42EP3-201ENST00000295324 5700 ntAPPRIS P1 TSL 1 (best) BASIC16.34■□□□□ 0.21
COL28A1Q2UY09 DBNDD2-204ENST00000372712 1537 ntAPPRIS P1 TSL 5 BASIC16.34■□□□□ 0.21
COL28A1Q2UY09 FOLH1-204ENST00000356696 2403 ntTSL 1 (best) BASIC16.34■□□□□ 0.21
Retrieved 100 of 98,524 protein–RNA pairs in 40.6 ms