Protein–RNA interactions for Protein: P01909

HLA-DQA1, HLA class II histocompatibility antigen, DQ alpha 1 chain, humanhuman

Predictions only

Length 254 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
HLA-DQA1P01909 AC020659.1-201ENST00000309874 2900 ntTSL 2 BASIC12.84□□□□□ -0.35
HLA-DQA1P01909 ARAP2-201ENST00000303965 7514 ntAPPRIS P1 TSL 1 (best) BASIC12.84□□□□□ -0.35
HLA-DQA1P01909 RNPS1-219ENST00000566397 1685 ntTSL 2 BASIC12.84□□□□□ -0.35
HLA-DQA1P01909 TMEM139-201ENST00000359333 2383 ntAPPRIS P1 TSL 1 (best) BASIC12.84□□□□□ -0.35
HLA-DQA1P01909 DSEL-201ENST00000310045 9531 ntAPPRIS P1 TSL 2 BASIC12.84□□□□□ -0.35
HLA-DQA1P01909 LTV1-201ENST00000367576 1847 ntAPPRIS P1 TSL 1 (best) BASIC12.84□□□□□ -0.35
HLA-DQA1P01909 LINC00671-201ENST00000301683 1958 ntTSL 2 BASIC12.84□□□□□ -0.35
HLA-DQA1P01909 CTAG2-201ENST00000247306 993 ntTSL 1 (best) BASIC12.84□□□□□ -0.35
HLA-DQA1P01909 MRGPRG-201ENST00000332314 870 ntAPPRIS P1 BASIC12.84□□□□□ -0.35
HLA-DQA1P01909 BUB3-202ENST00000368859 667 ntTSL 3 BASIC12.84□□□□□ -0.35
HLA-DQA1P01909 CCDC107-202ENST00000378406 1016 ntAPPRIS ALT2 TSL 2 BASIC12.84□□□□□ -0.35
HLA-DQA1P01909 NT5C3B-203ENST00000435506 975 ntAPPRIS P1 TSL 5 BASIC12.84□□□□□ -0.35
HLA-DQA1P01909 SMG1P1-207ENST00000446662 852 ntTSL 5 BASIC12.84□□□□□ -0.35
HLA-DQA1P01909 AC098590.1-201ENST00000468126 897 ntBASIC12.84□□□□□ -0.35
HLA-DQA1P01909 PTTG1-205ENST00000520452 895 ntAPPRIS P1 TSL 3 BASIC12.84□□□□□ -0.35
HLA-DQA1P01909 TMEM263-203ENST00000547242 811 ntAPPRIS P1 TSL 2 BASIC12.84□□□□□ -0.35
HLA-DQA1P01909 AL353593.2-202ENST00000602947 550 ntTSL 4 BASIC12.84□□□□□ -0.35
HLA-DQA1P01909 FCMR-210ENST00000628511 1055 ntAPPRIS ALT2 TSL 1 (best) BASIC12.84□□□□□ -0.35
HLA-DQA1P01909 ASRGL1-211ENST00000628829 1161 ntTSL 1 (best) BASIC12.84□□□□□ -0.35
HLA-DQA1P01909 SLC39A1-201ENST00000310483 2427 ntAPPRIS P1 TSL 1 (best) BASIC12.84□□□□□ -0.35
HLA-DQA1P01909 GUCA1A-202ENST00000372958 1575 ntAPPRIS P1 TSL 1 (best) BASIC12.84□□□□□ -0.35
HLA-DQA1P01909 KLK6-202ENST00000376851 1708 ntAPPRIS P1 TSL 1 (best) BASIC12.84□□□□□ -0.35
HLA-DQA1P01909 AC003986.2-201ENST00000419944 1711 ntTSL 3 BASIC12.84□□□□□ -0.35
HLA-DQA1P01909 HAUS3-204ENST00000506763 3166 ntTSL 2 BASIC12.84□□□□□ -0.35
HLA-DQA1P01909 LINC02370-201ENST00000428272 2009 ntTSL 5 BASIC12.84□□□□□ -0.35
HLA-DQA1P01909 CCHCR1-202ENST00000396263 2490 ntTSL 5 BASIC12.84□□□□□ -0.35
HLA-DQA1P01909 MAP4K5-201ENST00000013125 4354 ntAPPRIS P1 TSL 1 (best) BASIC12.84□□□□□ -0.35
HLA-DQA1P01909 C3-201ENST00000245907 5263 ntAPPRIS P1 TSL 1 (best) BASIC12.84□□□□□ -0.35
HLA-DQA1P01909 ARHGEF1-219ENST00000599846 3393 ntAPPRIS ALT2 TSL 5 BASIC12.84□□□□□ -0.35
HLA-DQA1P01909 C20orf27-201ENST00000217195 1302 ntTSL 2 BASIC12.84□□□□□ -0.35
HLA-DQA1P01909 NPAS1-201ENST00000439365 1341 ntTSL 2 BASIC12.84□□□□□ -0.35
HLA-DQA1P01909 PNCK-203ENST00000370145 1455 ntTSL 2 BASIC12.84□□□□□ -0.35
HLA-DQA1P01909 NRN1-201ENST00000244766 1624 ntAPPRIS P1 TSL 1 (best) BASIC12.84□□□□□ -0.35
HLA-DQA1P01909 HPDL-201ENST00000334815 1629 ntAPPRIS P1 BASIC12.84□□□□□ -0.35
HLA-DQA1P01909 SLBP-202ENST00000429429 1623 ntTSL 2 BASIC12.84□□□□□ -0.35
HLA-DQA1P01909 AC004233.2-201ENST00000573315 2062 ntAPPRIS P1 TSL 5 BASIC12.84□□□□□ -0.35
HLA-DQA1P01909 EYA2-208ENST00000497062 2384 ntTSL 1 (best) BASIC12.84□□□□□ -0.35
HLA-DQA1P01909 MAPKAPK3-203ENST00000446044 2988 ntAPPRIS P1 TSL 1 (best) BASIC12.84□□□□□ -0.35
HLA-DQA1P01909 TRA2B-205ENST00000453386 2952 ntAPPRIS P1 TSL 1 (best) BASIC12.84□□□□□ -0.35
HLA-DQA1P01909 NPHP4-201ENST00000378156 4994 ntAPPRIS P1 TSL 1 (best) BASIC12.83□□□□□ -0.35
HLA-DQA1P01909 MROH6-201ENST00000398882 3469 ntAPPRIS P2 TSL 5 BASIC12.83□□□□□ -0.35
HLA-DQA1P01909 LMF2-202ENST00000474879 2582 ntAPPRIS P1 TSL 1 (best) BASIC12.83□□□□□ -0.35
HLA-DQA1P01909 HOXC5-201ENST00000312492 1805 ntAPPRIS P1 TSL 1 (best) BASIC12.83□□□□□ -0.35
HLA-DQA1P01909 FAM182B-201ENST00000376403 1681 ntAPPRIS P5 TSL 1 (best) BASIC12.83□□□□□ -0.35
HLA-DQA1P01909 L3HYPDH-201ENST00000247194 1527 ntAPPRIS P1 TSL 1 (best) BASIC12.83□□□□□ -0.35
HLA-DQA1P01909 NCF1B-201ENST00000423083 1516 ntTSL 2 BASIC12.83□□□□□ -0.35
HLA-DQA1P01909 FBXL5-201ENST00000341285 3385 ntAPPRIS P3 TSL 1 (best) BASIC12.83□□□□□ -0.36
HLA-DQA1P01909 ITSN1-205ENST00000381291 5437 ntTSL 1 (best) BASIC12.83□□□□□ -0.36
HLA-DQA1P01909 MINDY2-203ENST00000559228 9238 ntAPPRIS P3 TSL 2 BASIC12.83□□□□□ -0.36
HLA-DQA1P01909 SLC44A2-203ENST00000586078 3784 ntTSL 5 BASIC12.83□□□□□ -0.36
HLA-DQA1P01909 FCER2-201ENST00000346664 1596 ntAPPRIS P2 TSL 1 (best) BASIC12.83□□□□□ -0.36
HLA-DQA1P01909 PTGER3-209ENST00000460330 1447 ntAPPRIS ALT2 TSL 1 (best) BASIC12.83□□□□□ -0.36
HLA-DQA1P01909 LINC00167-201ENST00000530583 1419 ntBASIC12.83□□□□□ -0.36
HLA-DQA1P01909 TBRG4-203ENST00000395655 2225 ntTSL 2 BASIC12.83□□□□□ -0.36
HLA-DQA1P01909 ACOT8-201ENST00000217455 1168 ntAPPRIS P1 TSL 1 (best) BASIC12.83□□□□□ -0.36
HLA-DQA1P01909 NDUFB10-201ENST00000268668 705 ntAPPRIS P1 TSL 1 (best) BASIC12.83□□□□□ -0.36
HLA-DQA1P01909 CMTM8-201ENST00000307526 1174 ntAPPRIS P1 TSL 1 (best) BASIC12.83□□□□□ -0.36
HLA-DQA1P01909 MCAT-202ENST00000327555 1134 ntTSL 1 (best) BASIC12.83□□□□□ -0.36
HLA-DQA1P01909 MDK-201ENST00000359803 985 ntAPPRIS P2 TSL 2 BASIC12.83□□□□□ -0.36
HLA-DQA1P01909 LINC01743-201ENST00000366308 964 ntTSL 1 (best) BASIC12.83□□□□□ -0.36
HLA-DQA1P01909 HP1BP3-202ENST00000375000 928 ntTSL 1 (best) BASIC12.83□□□□□ -0.36
HLA-DQA1P01909 RALGPS1-206ENST00000394011 819 ntTSL 1 (best) BASIC12.83□□□□□ -0.36
HLA-DQA1P01909 NIFKP9-201ENST00000419265 221 ntBASIC12.83□□□□□ -0.36
HLA-DQA1P01909 C16orf90-202ENST00000437192 907 ntAPPRIS P1 TSL 5 BASIC12.83□□□□□ -0.36
HLA-DQA1P01909 AL355355.2-201ENST00000442321 338 ntBASIC12.83□□□□□ -0.36
HLA-DQA1P01909 MIR3936HG-202ENST00000457998 733 ntTSL 2 BASIC12.83□□□□□ -0.36
HLA-DQA1P01909 SFXN1-203ENST00000502393 637 ntTSL 2 BASIC12.83□□□□□ -0.36
HLA-DQA1P01909 UBE2K-204ENST00000503368 891 ntTSL 1 (best) BASIC12.83□□□□□ -0.36
HLA-DQA1P01909 CNOT8-224ENST00000523698 862 ntTSL 2 BASIC12.83□□□□□ -0.36
HLA-DQA1P01909 AC117500.4-201ENST00000542797 617 ntTSL 3 BASIC12.83□□□□□ -0.36
HLA-DQA1P01909 TMEM72-203ENST00000544540 1018 ntTSL 1 (best) BASIC12.83□□□□□ -0.36
HLA-DQA1P01909 NFATC3-222ENST00000575270 3824 ntTSL 5 BASIC12.83□□□□□ -0.36
HLA-DQA1P01909 FLT3LG-211ENST00000600429 984 ntAPPRIS P1 TSL 1 (best) BASIC12.83□□□□□ -0.36
HLA-DQA1P01909 SLC35A2-213ENST00000635015 1008 ntTSL 2 BASIC12.83□□□□□ -0.36
HLA-DQA1P01909 SPATA6-204ENST00000396199 4964 ntTSL 2 BASIC12.83□□□□□ -0.36
HLA-DQA1P01909 TOM1L2-203ENST00000395739 1766 ntTSL 2 BASIC12.83□□□□□ -0.36
HLA-DQA1P01909 EIF2B4-212ENST00000622434 1771 ntTSL 5 BASIC12.83□□□□□ -0.36
HLA-DQA1P01909 CCDC115-201ENST00000259229 1646 ntAPPRIS P1 TSL 1 (best) BASIC12.83□□□□□ -0.36
HLA-DQA1P01909 AC125494.1-203ENST00000396799 1622 ntTSL 1 (best) BASIC12.83□□□□□ -0.36
HLA-DQA1P01909 DPEP1-203ENST00000421184 1647 ntAPPRIS P1 TSL 5 BASIC12.83□□□□□ -0.36
HLA-DQA1P01909 AL079301.1-201ENST00000424580 1633 ntTSL 2 BASIC12.83□□□□□ -0.36
HLA-DQA1P01909 NEK11-210ENST00000510769 2149 ntTSL 2 BASIC12.83□□□□□ -0.36
HLA-DQA1P01909 JPH4-201ENST00000356300 4278 ntAPPRIS P2 TSL 1 (best) BASIC12.83□□□□□ -0.36
HLA-DQA1P01909 PPM1J-202ENST00000464951 2474 ntTSL 1 (best) BASIC12.83□□□□□ -0.36
HLA-DQA1P01909 NUP98-201ENST00000324932 6973 ntAPPRIS P1 TSL 1 (best) BASIC12.83□□□□□ -0.36
HLA-DQA1P01909 RBM14-201ENST00000310137 2828 ntAPPRIS P1 TSL 1 (best) BASIC12.83□□□□□ -0.36
HLA-DQA1P01909 LENG8-209ENST00000616932 2825 ntAPPRIS ALT2 TSL 5 BASIC12.83□□□□□ -0.36
HLA-DQA1P01909 ATP2A3-206ENST00000397043 3197 ntAPPRIS ALT1 TSL 1 (best) BASIC12.83□□□□□ -0.36
HLA-DQA1P01909 SUCLA2-201ENST00000378654 2192 ntAPPRIS P1 TSL 1 (best) BASIC12.83□□□□□ -0.36
HLA-DQA1P01909 AC007182.1-201ENST00000455232 2159 ntTSL 1 (best) BASIC12.83□□□□□ -0.36
HLA-DQA1P01909 IRF5-202ENST00000357234 1680 ntTSL 1 (best) BASIC12.83□□□□□ -0.36
HLA-DQA1P01909 NANOS1-202ENST00000425699 4017 ntAPPRIS P2 BASIC12.83□□□□□ -0.36
HLA-DQA1P01909 LYPLA1-214ENST00000618741 2526 ntTSL 5 BASIC12.83□□□□□ -0.36
HLA-DQA1P01909 GINS4-206ENST00000520710 2022 ntTSL 2 BASIC12.83□□□□□ -0.36
HLA-DQA1P01909 FAM210A-202ENST00000402563 4240 ntAPPRIS P1 TSL 3 BASIC12.83□□□□□ -0.36
HLA-DQA1P01909 KCNQ2-215ENST00000629241 2853 ntTSL 5 BASIC12.83□□□□□ -0.36
HLA-DQA1P01909 AC010478.1-202ENST00000559112 2367 ntTSL 2 BASIC12.83□□□□□ -0.36
HLA-DQA1P01909 PDP1-201ENST00000297598 4272 ntAPPRIS P3 TSL 1 (best) BASIC12.82□□□□□ -0.36
HLA-DQA1P01909 PON2-201ENST00000222572 1745 ntAPPRIS P1 TSL 1 (best) BASIC12.82□□□□□ -0.36
HLA-DQA1P01909 C11orf24-201ENST00000304271 2063 ntAPPRIS P3 TSL 1 (best) BASIC12.82□□□□□ -0.36
Retrieved 100 of 98,524 protein–RNA pairs in 30.5 ms